prot_L-elsbetiae_contig1512.3667.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1512.3667.1
Unique Nameprot_L-elsbetiae_contig1512.3667.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length286
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1512.3667.1 vs. uniprot
Match: D7G0M9_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M9_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 4.810e-45
Identity = 123/235 (52.34%), Postives = 140/235 (59.57%), Query Frame = 0 
Query:    1 MVPGGGVPPPTSGGLAASALAPGERPAEQDEDVARRLGFDVERRELSQEMGCIEVTSVSPGGVAARHGLRPKDLVLAVDGGHLLSTTASSFWLDVGRTLRASDIASREDKRPAAXXXXXXGSDNHDSF------------WLRFLVFRKGAVVLPNGAAATATAAAAVSAFSVNSGGVRRPRGSPPGSKSIRGRKRGAAAAVAG---SDQSMEIDWRLPKQQRQLQARELSGADA 220
            M PGGGV PPT  GL AS    GERPAEQD +VARRLGFDVERRELSQ M CIEV+SV+P GVAARHGL+PKDL+LAVDG HLLSTT +SFWL+VGRTLRA D AS+ +K           SDN D+F            WLRFLVFRK A               A      ++G  +RP G P GS      K+GA A  AG   + Q  E    L  +QR   +REL GA A
Sbjct:  640 MAPGGGVLPPTDVGLPASRA--GERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSASQTNKS-GGKAATTNDSDNEDAFERLSADHGDDSDWLRFLVFRKCAXXXXXXXXXXXXXXLA------SAGRAKRPVGRPKGSMES---KKGALAGGAGRGATGQKEEASRGLLPRQR---SRELPGAAA 859
[Close]
BLAST of mRNA_L-elsbetiae_contig1512.3667.1 vs. uniprot
Match: A0A6H5JEX0_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX0_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.210e-37
Identity = 92/159 (57.86%), Postives = 103/159 (64.78%), Query Frame = 0 
Query:    1 MVPGGGVPPPTSGGLAASALAPGERPAEQDEDVARRLGFDVERRELSQEMGCIEVTSVSPGGVAARHGLRPKDLVLAVDGGHLLSTTASSFWLDVGRTLRASDIASREDKRPA----------------------AXXXXXXGSDNHDSFWLRFLVFRK 137
            M  GGGV PPT     AS    GERPAEQD +VARRLGFDVERRELSQ M CIEV+S++P GVAARHGL+PKDL+LAVDG HLLSTT +SFWL+VGRTLRA D A +  K  +                      A      G D+ DS WLRFLVFRK
Sbjct:  790 MASGGGVLPPTDRDSPASRA--GERPAEQDAEVARRLGFDVERRELSQWMECIEVSSITPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDTAFQTKKGGSKASTTAXXXXXXXXXXXXXGQDAFERLSAGHDD-DSDWLRFLVFRK 945
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1512.3667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0M9_ECTSI4.810e-4552.34PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JEX0_9PHAE1.210e-3757.86PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainPFAMPF00595PDZcoord: 35..83
e-value: 5.7E-5
score: 23.4
IPR001478PDZ domainPROSITEPS50106PDZcoord: 37..80
score: 9.29
NoneNo IPR availableGENE3D2.30.42.10coord: 30..105
e-value: 5.4E-8
score: 34.9
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 36..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1512contigL-elsbetiae_contig1512:18415..23928 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1512.3667.1mRNA_L-elsbetiae_contig1512.3667.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1512 18415..23928 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1512.3667.1 ID=prot_L-elsbetiae_contig1512.3667.1|Name=mRNA_L-elsbetiae_contig1512.3667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp
MVPGGGVPPPTSGGLAASALAPGERPAEQDEDVARRLGFDVERRELSQEM
GCIEVTSVSPGGVAARHGLRPKDLVLAVDGGHLLSTTASSFWLDVGRTLR
ASDIASREDKRPAAAAAAAAGSDNHDSFWLRFLVFRKGAVVLPNGAAATA
TAAAAVSAFSVNSGGVRRPRGSPPGSKSIRGRKRGAAAAVAGSDQSMEID
WRLPKQQRQLQARELSGADAMDAAAAAVAAGAGVSQEAAAAAAAAALPGE
QDQTKSGSGNGNSKGRGKGKGRGRSRPKNDGGVEKS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf