prot_L-elsbetiae_contig14395.3239.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14395.3239.1
Unique Nameprot_L-elsbetiae_contig14395.3239.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length279
Homology
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI)

HSP 1 Score: 417 bits (1071), Expect = 7.780e-139
Identity = 199/277 (71.84%), Postives = 231/277 (83.39%), Query Frame = 0
Query:    1 WTFNDGQGRSFARFNIDLYYCGGGCSLAGNCGDIVARLCEACPDSNGAEEILLPDVYSSHNYKIRVSTWSAVRRPASSCSPKFEIRGQDRPEHSTPFPTLPPGNNGGSLYPRPPVTAPPANDLPSNPVVQPTEFPDWGQENLAPAKPNCDSMEAPEVRYASTTARIYVEHSDGTRGGCFTLTEIWESGKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKVRTNKAGSGTHATH 277
            W+F+DG GR+FARFNIDLYYCGGGCS+  +CG+IVARLCEACPDS+G+E + LP+VYSSHNYKIRVST S +RRP SSCSPKFEIRG+DRP +STP PT+   ++  SLYPRPPVTAPP  DLPS PVV PT +PDWG+EN AP +P CDS++ P+VRYASTTARIYVE +   RGGCFTLTEIWESG RPLYP+  A  +R + VTGVWLLTEELYV+DGV LQ+HG DRGGDCDELRLLSD+TTF+NLRAHGGS S LGTKV +   G GT  T+
Sbjct:  203 WSFDDGLGRTFARFNIDLYYCGGGCSITEDCGEIVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSRIRRPGSSCSPKFEIRGKDRPLYSTPSPTVLYDSSDVSLYPRPPVTAPPVEDLPSEPVVLPTIWPDWGEENYAPEQPGCDSIDVPQVRYASTTARIYVEQATN-RGGCFTLTEIWESGSRPLYPLEPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSWNEGKGTVDTN 478          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: A0A6H5KSU6_9PHAE (MEP3 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU6_9PHAE)

HSP 1 Score: 399 bits (1026), Expect = 3.450e-135
Identity = 196/297 (65.99%), Postives = 232/297 (78.11%), Query Frame = 0
Query:    1 WTFNDGQGRSFARFNIDLYYCGGGCSLAGNCGDIVARLCEACPDSNGAEEILLPDVYSSHNYKIRVSTWSAVRRPASSCSPKFEIRGQDRPEHSTPFPTLPPGNNGGSLYPRPPVTAPPANDLPSNPVVQPTEFPDWGQENLAPAKPNCDSMEAPEVRYASTTARIYVEHSDGTRGGCFTLTEIWESGKRPLYPINTANGQRANN--------------------VTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKVRTNKAGSGTHATH 277
            W+F+DG GR+FARFNIDLYYCGGGCS+ G+CG++VARLCEACPDS+G+E + LP+VYSSHNYKIRVST S++RR  SSCSPKFEIRG+DRP +STP PT    ++  SLYPRPPVTAPP  DLPS PVV PT +PDWG+EN AP +P CDS++ PEVRYASTTARIY+E +   RGGCFTLTEIWESG RPLYP++ A  +R ++                    VTGVWLLTEELYV+DGV LQ+HG DRGGDCDELRLLS++TTF+NLRAHGGS S LGTKV +   G  T  T+
Sbjct:    9 WSFDDGLGRTFARFNIDLYYCGGGCSITGDCGEMVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSSIRRHGSSCSPKFEIRGKDRPLYSTPSPTALYDSSDVSLYPRPPVTAPPVEDLPSEPVVLPTIWPDWGEENYAPEQPGCDSVDVPEVRYASTTARIYLEQATN-RGGCFTLTEIWESGSRPLYPLDPATNERESHSITAVLSPLALLYCRSGVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSNETTFINLRAHGGSFSFLGTKVVSWNEGKRTVDTN 304          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 9.400e-41
Identity = 74/132 (56.06%), Postives = 95/132 (71.97%), Query Frame = 0
Query:  136 DWGQENLAPAKPNCDSMEAPEVRYASTTARIYVEHSDG-TRGGCFTLTEIWES--GKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKV 264
            D    N   +KP+CDS  A  +RYAS+T R+Y+E +DG TRGGC TL +IWE+  GK PLY ++  +G  + N TG WLLTEELYV DG+TL+++G   GGD DELRLLS   T++NLRAHGGS+  +GTKV
Sbjct:   29 DTASPNDPISKPDCDSDIAVSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAGKAPLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKV 160          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.070e-38
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 0
Query:  136 DWGQENLAPAKPNCDSMEAPEVRYASTTARIYVEHSDG-TRGGCFTLTEIWES--GKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKV 264
            D    N   +KP+CDS     +RYA  T R+Y+E +DG TRGGC TL ++WES  GK PLY ++  +G  +   TG WLLTEELYV DG+TL+++G D GGD DELRLLS   T++NLRA+GGS+  +GTKV
Sbjct:   30 DTASPNDPISKPDCDSDIEVSIRYAGNTKRLYLESADGETRGGCATLGQVWESRAGKGPLYAVDPDSGDVSETQTGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDTYINLRAYGGSLDFVGTKV 161          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.160e-38
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0
Query:  136 DWGQENLAPAKPNCDSMEAPEVRYASTTARIYVEHSDG-TRGGCFTLTEIWES--GKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKV 264
            D    N   +KP+CDS     +RYA TT R+Y+E +DG TRGGC TL +IWES  GK PLY ++  +G  +   TG WLLTEELYV DG+TL+++G D GGD DELRLLS   T++NLRAHGGS+  +GTKV
Sbjct:   30 DTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKV 161          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: D8LL67_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL67_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.550e-37
Identity = 98/273 (35.90%), Postives = 133/273 (48.72%), Query Frame = 0
Query:    1 WTFNDGQGRSFARFNIDLYYCGGGCSLAGNCGDIVARLCE---------ACPDSNGAEEILLPDVYSSHNYKIRVSTWSAVRRPASSCSPKFEIRGQDRPEHSTPFPTLPPGNNGGSLYPRPPVTAPPANDLPSNPVVQPTEFPDWGQENLAPAKPNCDSMEAPEVRYASTTARIYVEHSDGTRGGCFTLTEIWESGKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKV 264
            W ++DG+G +  RF+I+LY  G GCS     G  VA +C           CPD+ G  ++++P    S  Y I+V  + A     S CSP F +                   N G +      T     D      V P+ +     +  A  KP CD      VRYA++T R+Y EH+DGT GGC TL+++          +   N   A+ VTG WL+  +LYV++GVTLQLHG   GGDCD LR+ S DT F NLR HGGS+  L T +
Sbjct:  156 WDYSDGEGSTQGRFDIELY-SGAGCS-----GSRVADICGKTNSQGDLIGCPDTAGDYDVVIPTDIMSGEYSIKVGVFGATS--PSGCSPVFSVVA----------------TNSGVID-----TGAVGTD-----TVVPSPW-----DGYAFPKPACDPTIPVTVRYAASTQRVYFEHTDGTTGGCATLSDVLAERVEKNGTVKIMN---ASQVTGHWLIEADLYVTNGVTLQLHGSASGGDCDALRIKSTDTEFFNLRGHGGSLDFLDTNI 386          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.340e-35
Identity = 67/122 (54.92%), Postives = 87/122 (71.31%), Query Frame = 0
Query:  146 KPNCDSMEAPEVRYASTTARIYVEHSDG-TRGGCFTLTEIWES--GKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKV 264
            KP CD   A  +RY+S   R+Y+E +D  TRGGC TL +IWE   G+ PLY +++ +G  +++ TG WLLTEEL+V DG+TL++HG   GGD DELRLLS   TF+NLRAHGGS+  L TKV
Sbjct:   33 KPECDESIAVSIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKV 154          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 142 bits (358), Expect = 1.860e-35
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 0
Query:  141 NLAPAKPNCDSMEAPEVRYASTTARIYVEHSDG-TRGGCFTLTEIWES--GKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKV 264
            N A AKP+C S     +RY+ T+ R+Y+E +DG TRGGC TL +IW    G  PLY +  ++G  ++++TG WLLTE LYV DG+TLQ+HG+  GG  DELRLLS    F+NLRAHGGS+  + TKV
Sbjct:   28 NKAIAKPSCKSSTKVSIRYSKTSKRLYLESADGNTRGGCVTLEDIWRDLDGGAPLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKV 154          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 6.000e-35
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 0
Query:  154 APEVRYASTTARIYVEHSDG--TRGGCFTLTEIWES--GKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKV 264
            A  +RYA +TAR+Y+E +D   TRGGC TL +IWES  GK PLY ++  +G  + + TG WLLTEELYV DG+TL+++G + GGD DELRLLS + TF+NLRAHGGS+  + TKV
Sbjct:   43 AVSIRYAESTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKV 157          
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.070e-34
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 0
Query:  154 APEVRYASTTARIYVEHSDG--TRGGCFTLTEIWES--GKRPLYPINTANGQRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNLRAHGGSISMLGTKV 264
            A  +RYA TTAR+Y+E +D   TRGGC TL +IWES  GK PLY ++  +G  + + TG WLLTEELYV DG+TL+++G + GGD DELRLLS + TF+NLRAHGGS+  + TKV
Sbjct:   43 AVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14395.3239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FMJ0_ECTSI7.780e-13971.84Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KSU6_9PHAE3.450e-13565.99MEP3 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JU98_9PHAE9.400e-4156.06MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LHA2_ECTSI1.070e-3853.79Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FXE4_ECTSI1.160e-3856.06Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LL67_ECTSI1.550e-3735.90Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ7_9PHAE1.340e-3554.92Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
A8CEP1_SACJA1.860e-3552.76Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
D7FXE5_ECTSI6.000e-3557.39Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI1.070e-3458.26Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 132..277
e-value: 9.0E-13
score: 49.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14395contigL-elsbetiae_contig14395:429..3989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14395.3239.1mRNA_L-elsbetiae_contig14395.3239.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14395 429..3989 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14395.3239.1 ID=prot_L-elsbetiae_contig14395.3239.1|Name=mRNA_L-elsbetiae_contig14395.3239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=279bp
WTFNDGQGRSFARFNIDLYYCGGGCSLAGNCGDIVARLCEACPDSNGAEE
ILLPDVYSSHNYKIRVSTWSAVRRPASSCSPKFEIRGQDRPEHSTPFPTL
PPGNNGGSLYPRPPVTAPPANDLPSNPVVQPTEFPDWGQENLAPAKPNCD
SMEAPEVRYASTTARIYVEHSDGTRGGCFTLTEIWESGKRPLYPINTANG
QRANNVTGVWLLTEELYVSDGVTLQLHGRDRGGDCDELRLLSDDTTFLNL
RAHGGSISMLGTKVRTNKAGSGTHATHV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold