prot_L-elsbetiae_contig1369.2812.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1369.2812.1
Unique Name	prot_L-elsbetiae_contig1369.2812.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	170

Homology

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.630e-73
Identity = 143/168 (85.12%), Postives = 156/168 (92.86%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMRFS 168
            MSRSQRNDNFIDKTFTI+AD+ILK FPASKEEK+AF+YYKDG+SAQ EGEYAEALENYYEALQ+EED  DRSFXXXXXXXXXXXXXXXXXXXXXXXXXXX N NLPQALNNIAVIYH+QGVKASEKQN ++AK+LF KA+ YWKQAINLAP+NYI AQNWL+TT R S
Sbjct:    1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNLPQALNNIAVIYHYQGVKASEKQNIDVAKLLFNKAAEYWKQAINLAPNNYIEAQNWLRTTGRLS 168

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.520e-72
Identity = 139/166 (83.73%), Postives = 154/166 (92.77%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMR 166
            M+RSQ+NDNFIDKTFT+MAD++LK FPASKEEK+AF+YY+DG+SAQ EGEYAEALENYYEALQIEED KDRS XXXXXXXXXXXXXXXXXXXXXXXXXX LN+NLPQALNNIAVIYH+QG+KASEKQN +IAKILF +AS YWKQAI LAP+NYI AQNWL TT R
Sbjct:    1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXELNTNLPQALNNIAVIYHYQGIKASEKQNIDIAKILFSRASQYWKQAITLAPNNYIEAQNWLSTTGR 166

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK)

HSP 1 Score: 213 bits (543), Expect = 3.690e-68
Identity = 133/166 (80.12%), Postives = 148/166 (89.16%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMR 166
            M RSQRNDNFIDKTFT+MAD++LK FPASKEEK+AF+YY+DG+SAQ EGEYAEALENYYEALQIEED  DR F XXXXXXXXXXXXXXXXXXXXXXXXX LNSNLPQALNNIAVIYH+QG+KA++KQN  +A+  F KA+ YWKQAI LAP NYI AQNWL+TT R
Sbjct:    1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDRGFIXXXXXXXXXXXXXXXXXXXXXXXXXALNSNLPQALNNIAVIYHYQGMKATKKQNVEVAREFFDKAAEYWKQAITLAPTNYIEAQNWLKTTGR 166

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.600e-67
Identity = 134/168 (79.76%), Postives = 150/168 (89.29%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMRFS 168
            M RSQRNDNFIDKTFTI+AD++LK  PASK+EKQAF+YY+DG+SAQ EGEYAEALENYYEALQ+EED  DRS+  XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYH+QGVKAS+K+N  IAK LF KA+ YWKQAI LAP+NYI AQNWL+TT R +
Sbjct:    1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNLNLPQALNNIAVIYHYQGVKASKKKNLEIAKGLFDKAAEYWKQAIKLAPNNYIEAQNWLKTTGRIT 168

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: B7T1Q9_VAULI (Photosystem I assembly protein Ycf3 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Q9_VAULI)

HSP 1 Score: 212 bits (539), Expect = 1.600e-67
Identity = 135/168 (80.36%), Postives = 153/168 (91.07%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMRFS 168
            M + QRNDNFIDKTFTIMAD++LK FPASKEEKQAF+YYKDG+SAQ +GEYAEALE+YYEALQ+EED  DRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNS+L QALNNIAVIYH+QG+KA EKQN  +A++LF KA+ YWKQAINLAP+NYI A+NWLQTT R +
Sbjct:    1 MVKIQRNDNFIDKTFTIMADILLKVFPASKEEKQAFFYYKDGMSAQSDGEYAEALEDYYEALQMEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSSLMQALNNIAVIYHYQGIKAFEKQNLEVAQLLFDKAAEYWKQAINLAPNNYIEARNWLQTTGRIT 168

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.190e-67
Identity = 132/168 (78.57%), Postives = 149/168 (88.69%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMRFS 168
            M R Q+NDNFIDKTFTI+AD++LK FPASK+EKQAF+YY++G+SAQ EGEYAEALENYYEALQIEED  DRS+  XXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYH+QG+KASE +N  +AK LF KA  YW+QAI LAP+NYI AQNWL+TT R S
Sbjct:    1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGIKASEVENLEVAKTLFDKAGEYWQQAIKLAPNNYIEAQNWLKTTGRMS 168

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: A0A1C9CCZ3_9RHOD (Photosystem I assembly protein Ycf3 n=8 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCZ3_9RHOD)

HSP 1 Score: 210 bits (535), Expect = 5.690e-67
Identity = 127/168 (75.60%), Postives = 146/168 (86.90%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMRFS 168
            M RSQRNDNFIDKTFT++AD++LK  PASKEEK+AF YY+DG+SAQ EGEYAEALENYYEAL++EED  DRS+     XXXXXXXXXXXXXXXXXXXXXXLNS LPQALNNIAVIYH+QG+KAS K NF  AKI+F KA++YWKQA+ LAP+NYI AQNWL+TT R +
Sbjct:    1 MPRSQRNDNFIDKTFTVLADIVLKILPASKEEKEAFSYYRDGMSAQTEGEYAEALENYYEALRLEEDPYDRSYILYNIXXXXXXXXXXXXXXXXXXXXXXLNSKLPQALNNIAVIYHYQGIKASRKNNFETAKIMFDKAADYWKQAVQLAPNNYIEAQNWLKTTGRLN 168

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.260e-66
Identity = 132/168 (78.57%), Postives = 147/168 (87.50%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMRFS 168
            M RSQRNDNFIDKTFT++AD++LK FPASK+EKQAF+YY+DG+SAQ EG+YAEALENYYEALQIEED  DRS+  XXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYH+QG +A EKQN   +K LF KA  YW+QAI LAP NYI AQNWL+TT R S
Sbjct:    1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGSQAIEKQNTETSKALFDKAGEYWRQAIRLAPTNYIEAQNWLKTTGRIS 168

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI)

HSP 1 Score: 205 bits (521), Expect = 8.180e-65
Identity = 127/166 (76.51%), Postives = 147/166 (88.55%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMR 166
            M RSQ+NDNFIDKTFT++AD+ILK  P SKEEKQAFYYY+DG+SAQ EGEYAEALENYYEALQ+EED  DRS+  XXXXXXXXXXXXXXXXXXXXXXXXXLN+NLPQA NNIAVIYH+QG+KA+++Q  N++K +F KA+ YW QAI LAP+NYI AQNWL+TT R
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNANLPQAFNNIAVIYHYQGIKAAQQQKLNMSKEMFNKAAKYWGQAIQLAPNNYIEAQNWLKTTGR 166

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BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Match: A0A141SCS8_9FLOR (Photosystem I assembly protein Ycf3 n=1 Tax=Sporolithon durum TaxID=48970 RepID=A0A141SCS8_9FLOR)

HSP 1 Score: 204 bits (520), Expect = 1.280e-64
Identity = 128/168 (76.19%), Postives = 148/168 (88.10%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGEYAEALENYYEALQIEEDYKDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLAPDNYITAQNWLQTTMRFS 168
            M RSQ+NDNFIDKTFT++AD++LK  P SKEEK+AF YY+DG+SAQ EGEYAEALENYYEAL++EED  DRS+  XXXXXXXXXXXXXXXXXXXXXXXXXLNS LPQALNN+AVIYH+QG+KA  + + +IAK LF KA+ YWKQAINLAP+NYI AQNWL+TT RFS
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIVLKILPTSKEEKEAFCYYRDGMSAQSEGEYAEALENYYEALKLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSQLPQALNNVAVIYHYQGLKAKNQGDIDIAKSLFDKAAEYWKQAINLAPNNYIEAQNWLKTTGRFS 168

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1369.2812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1L2F1V5_9PHAE	1.630e-73	85.12	Photosystem I assembly protein Ycf3 n=58 Tax=Phaeo...	[more]
A0A7S6U9V8_9STRA	2.520e-72	83.73	Photosystem I assembly protein Ycf3 n=1 Tax=Schizo...	[more]
B2XT84_HETAK	3.690e-68	80.12	Photosystem I assembly protein Ycf3 n=2 Tax=Hetero...	[more]
A0A023HBL3_9STRA	1.600e-67	79.76	Photosystem I assembly protein Ycf3 n=10 Tax=Ochro...	[more]
B7T1Q9_VAULI	1.600e-67	80.36	Photosystem I assembly protein Ycf3 n=1 Tax=Vauche...	[more]
A0A516ZA68_9STRA	2.190e-67	78.57	Photosystem I assembly protein Ycf3 n=3 Tax=Dictyo...	[more]
A0A1C9CCZ3_9RHOD	5.690e-67	75.60	Photosystem I assembly protein Ycf3 n=8 Tax=Rhodop...	[more]
J9QSV9_9STRA	1.260e-66	78.57	Photosystem I assembly protein Ycf3 n=3 Tax=Pelago...	[more]
A0A1Z1M4W4_OSMFI	8.180e-65	76.51	Photosystem I assembly protein Ycf3 n=1 Tax=Osmund...	[more]
A0A141SCS8_9FLOR	1.280e-64	76.19	Photosystem I assembly protein Ycf3 n=1 Tax=Sporol...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 106..153 e-value: 360.0 score: 1.3 coord: 72..105 e-value: 1.1E-5 score: 34.9 coord: 35..68 e-value: 0.1 score: 21.7
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 72..105 score: 11.712
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 35..68 score: 9.027
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 74..104 e-value: 1.8E-8 score: 33.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 10..166 e-value: 3.1E-21 score: 78.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 22..155
None	No IPR available	PANTHER	PTHR26312:SF124		coord: 45..167
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 45..167
IPR022818	Photosystem I Ycf3, assembly	HAMAP	MF_00439	Ycf3	coord: 1..168 score: 41.462
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 35..105 score: 18.457

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1369	contig	L-elsbetiae_contig1369:21589..22098 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1369.2812.1	mRNA_L-elsbetiae_contig1369.2812.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1369 21589..22098 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1369.2812.1 ID=prot_L-elsbetiae_contig1369.2812.1|Name=mRNA_L-elsbetiae_contig1369.2812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MSRSQRNDNFIDKTFTIMADLILKTFPASKEEKQAFYYYKDGLSAQLEGE
YAEALENYYEALQIEEDYKDRSFILYNVGLIYANNGEYLKALEYYHQAIE
LNSNLPQALNNIAVIYHFQGVKASEKQNFNIAKILFIKASNYWKQAINLA
PDNYITAQNWLQTTMRFSF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR001440	TPR_1
IPR011990	TPR-like_helical_dom_sf
IPR022818	PSI_Ycf3_assembly
IPR013026	TPR-contain_dom