prot_L-elsbetiae_contig1360.2745.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1360.2745.1
Unique Nameprot_L-elsbetiae_contig1360.2745.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length322
Homology
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: D8LFT3_ECTSI (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT3_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 3.500e-91
Identity = 193/257 (75.10%), Postives = 208/257 (80.93%), Query Frame = 0
Query:    1 MAEVSHALSLLRQETSITDEVLGAINTCQSGTKLDASARAAIKNALLLLRGKEAKLVKAEETLDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAVLRGPLKDAKRLLEEGRIAEASEIAVGDIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVTTG-ASLPASELLRIAHDLDTPLDQTESATRTDGEGXXXXXXXXXXXXXXXXXXXPRK-REEKDGPGHR---EGSPKRRGAKR 252
            MAEVS  LSLLR+ETSI DEVLGA+  CQSGTKLDA+ARAAI+ AL+LL GKEAKL KA E L  HQ+LHAEVESLRQEVR G Q+VQDCAR+LTEADA LRGPL+DAKRLLE GR AEA+EI V DIVDYAQRISGITSAP+YWKPGMAMVGFAPPAPRPEMMRAGALSAFAV+ G +SL   ELL +A DLD P DQT +A       XXXXXXXXXXXXXXXXXXX    R  KD PG     EGSPKRRG KR
Sbjct:    1 MAEVSRVLSLLREETSIADEVLGALARCQSGTKLDANARAAIRKALVLLNGKEAKLTKASEALREHQQLHAEVESLRQEVRYGEQQVQDCARKLTEADAALRGPLRDAKRLLEAGRKAEAAEIDVRDIVDYAQRISGITSAPAYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVSPGTSSLSLPELLTLARDLDRPPDQTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXSGDGRNRKDEPGSTGGGEGSPKRRGVKR 257          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: A0A835YUZ4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.990e-17
Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   90 CARRLTEADAVLRGPLKDAKRLLEEGRIAEASEIAVGDIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVTTGAS 179
            C   +  A A LR  L+ A++ L E   A A+ +AV DIV YAQRISG TSAP+YWKPGM MVGF PPAP PEMMR GAL+     T A+
Sbjct:   59 CVAAIAGASADLRHALESARKSLGEFDKACAAGVAVSDIVAYAQRISGTTSAPAYWKPGMPMVGFLPPAPLPEMMRMGALTRLNAGTAAT 148          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: A0A7S3UVI8_HETAK (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI8_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 1.360e-14
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 0
Query:   86 RVQDCARRLTEADAVLRGPLKDAKRLLEEGRIAEASEIAVGDIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFA 173
            R +D A  L+  +  LR  L+  K +++  R+A A+ +++  +V YAQRI G T+AP YWKPGM MVGF PPAP PE +RAG+  A+A
Sbjct:   76 RARDLASALSSKEKDLRIALRKVKPVVDAARLANANPVSLKGLVAYAQRIGGTTAAPPYWKPGMPMVGFIPPAPLPEQIRAGSFHAYA 163          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: A0A8K1CAS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAS9_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 8.140e-12
Identity = 53/161 (32.92%), Postives = 85/161 (52.80%), Query Frame = 0
Query:   11 LRQETSITDEVLGAINTCQSGTKLDASARA-AIKNALLLLRGKEAKLVKAEETLDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAVLRGPLKDAKRLLEEGRIAEASEIAVGDIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L +   +  ++L ++NT         S R  A+ +    +  K+  L+ A +TL  HQ    E+ +++ E+    Q+V   A +L ++   +   LK  +R+L+  R  +   +   D+V YA RI+G TSAP  W+PG  M GF PPAP+ +MMRAG LS
Sbjct:   12 LHEHRFLVTKLLESLNTASLPPSTITSTRLRAVNDTFNRVLEKDRDLLSAVKTLVQHQVAQKELLAVQDEIHEKKQKVVRYAAQLRQSQEDIALVLKKHRRVLDHARQKQKVLLDPRDVVAYAHRIAGTTSAPKEWRPGFPMFGFMPPAPQEQMMRAGVLS 172          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: A0A1V9Y9L5_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9L5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-10
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 0
Query:   56 LVKAEETLDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAVLRGPLKDAKRLLEEGRIA-EASEIAVGDIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L++  + L+AHQ    E++ L+ ++     ++ + AR L      +   L   KR+L   + +  A+ +A  DI+ YA +++  +SAP+ W+PG  M GF PPAP PEMMRAG LS
Sbjct:   59 LLQTVKQLNAHQVAQKELDRLKAQIAEKEAKIVNYARALRSGQKAISNVLLKHKRVLTNAKASPSATHLAPQDIIAYAHKVASTSSAPAGWQPGFPMFGFMPPAPTPEMMRAGVLS 174          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: A0A024TZF4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZF4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.520e-10
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 0
Query:   48 LLRGKEAKLVKAEETLDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAVLRGPLKDAKRLLEEGRIAEASEIAVG--DIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L+  K+ +L+   + L+ HQ    E+++L+ ++    Q++   A+ L      +   L   +R LE+     +S++ +   ++V YA +I+G TSAP  WKP   M GF PPAP PEMMRAG LS
Sbjct:   49 LVVAKDKQLLNTVKQLNQHQSAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASALAKHRRTLEQCHQDSSSKVVLDPLEVVAYAHKIAGSTSAPPNWKPEYPMFGFVPPAPTPEMMRAGVLS 173          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: W4FJC9_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJC9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.080e-9
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 0
Query:   52 KEAKLVKAEETLDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAVLRGPLKDAKRLLEEGRIAEASEIAVG--DIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            K+ +L++  + L+ HQ    E+++L+ ++    Q++   A+ L      +   L   +R L +     AS++ +   DIV YA +I+G TSAP  W+P   M GF PPAP PEMMRAG LS
Sbjct:   52 KDKQLLRTVKQLNQHQTAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASVLAKHRRTLTQCAQDAASKVVLDPLDIVAYAHKIAGSTSAPPNWQPEYPMFGFVPPAPTPEMMRAGVLS 172          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: A0A1V9Y7Z7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7Z7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.160e-9
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 0
Query:   63 LDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAVLRGPLKDAKRLLEEGRIA-EASEIAVGDIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L+ HQ    E++ ++Q++     ++   A+ L      +   L   KR+LE  + A         DI+ YA +++  TSA   W+PG AMVGF PPAP PEMMRAG LS
Sbjct:   69 LNQHQRAQKELDRIKQQIAEKEAKIVAYAKELRTGQQAINSVLLKHKRVLENAKAAPNTPRFPPQDIIAYAHKVASTTSAALNWQPGFAMVGFLPPAPTPEMMRAGVLS 177          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: A0A067BXL3_SAPPC (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BXL3_SAPPC)

HSP 1 Score: 68.2 bits (165), Expect = 2.990e-9
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = 0
Query:   56 LVKAEETLDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAVLRGPLKDAKRLLEEGRIAEA-SEIAVGDIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L++  + L+AHQ    E+++++ ++     ++   AR L      +   L   +R+L   + +   S +   DI+ YA +++  +SAP+ W+PG  M GF PPAP PEMMRAG LS
Sbjct:   60 LLQTVKQLNAHQAAQKELDNIKAQIAEKEAKIVQYARELRGGQKAISNVLLKHRRVLSNAKASSTTSHMKPQDIIAYAHKVASTSSAPAGWQPGYPMFGFMPPAPTPEMMRAGVLS 175          
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Match: A0A3M6VUY4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUY4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.800e-9
Identity = 54/188 (28.72%), Postives = 91/188 (48.40%), Query Frame = 0
Query:   11 LRQETSITDEVLGAINTCQ-SGTKLDASARAAIKNALLLLRGKEAKLVKAEETLDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAVLRGPLKDAKRLLEEGRIAEASEIAVGDIVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS----AFAVTTGASLPASELLRIAHDLD 193
            L +   +  ++L ++NT     + + A+    +      +  K+  L+ A + L  HQ    E+  ++ E+ +  Q+V + A +L  +   +   L+  + +L+  +      +   D++ YA RI+G TSAP  W+PG  M GF PPAP+  MMRAG LS    A  VT G  L  S   R+  + D
Sbjct:   16 LHEHRFLVTKLLESLNTASLPPSTITATRLRTVTETFQKVLAKDRDLLAAVKKLSRHQVAQTELLRIKTEIANKKQKVVEYATQLHRSQENVAQVLRKHRVVLQNTKEKAKVVLDPRDLIAYAHRIAGTTSAPKEWQPGFPMFGFMPPAPQEHMMRAGVLSRGIVAEIVTQGPELYTSIAARVKQEGD 203          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1360.2745.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LFT3_ECTSI3.500e-9175.10Mediator of RNA polymerase II transcription subuni... [more]
A0A835YUZ4_9STRA1.990e-1756.67Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3UVI8_HETAK1.360e-1447.73Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CAS9_PYTOL8.140e-1232.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9Y9L5_9STRA1.100e-1036.21Mediator of RNA polymerase II transcription subuni... [more]
A0A024TZF4_9STRA1.520e-1035.20Mediator of RNA polymerase II transcription subuni... [more]
W4FJC9_9STRA1.080e-936.36Mediator of RNA polymerase II transcription subuni... [more]
A0A1V9Y7Z7_9STRA1.160e-937.61Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067BXL3_SAPPC2.990e-933.62Mediator of RNA polymerase II transcription subuni... [more]
A0A3M6VUY4_9STRA7.800e-928.72Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..79
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 47..175
e-value: 3.9E-13
score: 49.5
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 6..319

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1360contigL-elsbetiae_contig1360:13610..18156 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1360.2745.1mRNA_L-elsbetiae_contig1360.2745.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1360 13415..18156 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1360.2745.1 ID=prot_L-elsbetiae_contig1360.2745.1|Name=mRNA_L-elsbetiae_contig1360.2745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=322bp
MAEVSHALSLLRQETSITDEVLGAINTCQSGTKLDASARAAIKNALLLLR
GKEAKLVKAEETLDAHQELHAEVESLRQEVRSGVQRVQDCARRLTEADAV
LRGPLKDAKRLLEEGRIAEASEIAVGDIVDYAQRISGITSAPSYWKPGMA
MVGFAPPAPRPEMMRAGALSAFAVTTGASLPASELLRIAHDLDTPLDQTE
SATRTDGEGAAESDGNSSSSSGSGSSGEPRKREEKDGPGHREGSPKRRGA
KRAGGGEEEEEEGGDGGAGGGGGGSSPAGGKGKPSRSASGASFARPTPPK
RPTISLDLDDLDSEDDSSDEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4