prot_L-elsbetiae_contig136.2738.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig136.2738.1
Unique Nameprot_L-elsbetiae_contig136.2738.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length545
Homology
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: A0A6H5KCR0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR0_9PHAE)

HSP 1 Score: 548 bits (1413), Expect = 1.240e-186
Identity = 298/515 (57.86%), Postives = 343/515 (66.60%), Query Frame = 0
Query:    1 MIWDE-NHVDHACGTLLVRGGTI--ERCLYEVIDTIGWRWGLVVLSYAWLAVLTVVQGTLIRLCCGRLRPVERGLATKAILGNVWRSLVFLNVVLAPKDVREWLFWVLWFSSTGLLALLETVGREHFEHVIDNPRAGVIHHLRTLSLHAVVLCLGVCLAQVGWGEFVEWGKGPVGQVLLSPSQTLAPTPISDNDYGDXXXXXXXXXXDGECSVDGSGFRDVVMISTDPERGGTGFALLLLYDLAVTGTEVLLSALKYVANLLELSTRKDADSAYTEEGSMEHITFLTRLGQAILSASRTVYTFKSCAHCTLVRKMLVRFITMVSGARAAQRIHRAAWRVVLAKEMDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLCPICRTAIPWHPSVGGIKPSPDARLGGSGESEPAGGDVRSTTNNTGTAATTANDSDIGSRGGDERHSPPHLRFGPAVHGPPTPDGFSRAARGADSAVRMVRQMLRFGLTGG 512
            M WDE +HV  AC   L        E CL +VI+T GWRWG V+ SY WL  L +VQG L+RLCCG+L+PVER  AT A+LG VW S +F+NVVLAP+DVREWL W+LWFSSTGLL +LETVG+ HFEHV++NPR GV H LRTL LHA VL LG  LA++GW EF EWG GP+GQ+LLSPS  +    + + +  D                  S F      S  PERGGTGFALLLLYDLAVT TEV LSALKYV NLLEL   KD DSAYTEEG +E   F TRLGQAIL ASRT+Y FKSC HC  VRK+ +R ++ ++G +   RIH AA R+VLA+EMDVAFPDA+EQ+LK M  DESCAICLKTMT S KRLECQHFFH GCLRQYLN +A  +PLCPICR  I W+P+ GG KP         GE +                                    P L FGPAV+GPPTPDGFSRAARGADS VR+VRQMLR GLTGG
Sbjct:    1 MGWDERDHVVGACTAYLSGDPDTRPEHCLSKVIETFGWRWGFVLFSYTWLVFLWIVQGALVRLCCGKLKPVERARATAAVLGKVWSSFLFVNVVLAPEDVREWLLWLLWFSSTGLLKMLETVGKGHFEHVVENPRFGVGHTLRTLGLHAAVLYLGAHLARLGWNEFFEWGGGPIGQILLSPSPAVVDGDVIELNGNDGY----------------SYFGAAASTSAHPERGGTGFALLLLYDLAVTATEVGLSALKYVTNLLEL--HKDPDSAYTEEGCLEQTVFFTRLGQAILGASRTIYMFKSCGHCAFVRKVCIRVMSTINGGQTFNRIHSAACRLVLAREMDVAFPDATEQELKTMAADESCAICLKTMT-SAKRLECQHFFHAGCLRQYLNTSARTEPLCPICRAPISWNPTAGGNKPV------NRGEGDHLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-LAFGPAVNGPPTPDGFSRAARGADSVVRVVRQMLRLGLTGG 489          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: D8LFG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG6_ECTSI)

HSP 1 Score: 442 bits (1138), Expect = 2.110e-147
Identity = 231/383 (60.31%), Postives = 270/383 (70.50%), Query Frame = 0
Query:    1 MIWDE-NHVDHACGTLLVRGGTI--ERCLYEVIDTIGWRWGLVVLSYAWLAVLTVVQGTLIRLCCGRLRPVERGLATKAILGNVWRSLVFLNVVLAPKDVREWLFWVLWFSSTGLLALLETVGREHFEHVIDNPRAGVIHHLRTLSLHAVVLCLGVCLAQVGWGEFVEWGKGPVGQVLLSPSQTLAPTPISDNDYGDXXXXXXXXXXDGECSVDGSGFRDVVMISTDPERGGTGFALLLLYDLAVTGTEVLLSALKYVANLLELSTRKDADSAYTEEGSMEHITFLTRLGQAILSASRTVYTFKSCAHCTLVRKMLVRFITMVSGARAAQRIHRAAWRVVLAKEMDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQ 380
            M WDE +HV  AC   L        E CL +VI+T GWRWG V+ SY+WL  L +VQG LIRLCCG+L+PVER  AT  +LG VW S +F+NVVLAP+DVREWL W+LWFSSTGLL +LETVG+EHFEHV++NPR GV H LRTL LHA VL LG  LA++GW EF EWG GP+GQ+LLSPS  +    + + +  D                    F      STDPERGGTGFALLLLYDLAV  TEV LSALKY +NLLEL   KD DSAYTEEGS+E   F TRLGQAIL ASRTVY FKSC HC LVRK+ +R ++ ++G +   RIH AA R+VLA+EMDVAFPDA+EQ+LK M  DESCAICLKTMT S KR   +
Sbjct:    1 MGWDERDHVVGACTAYLSGDPDTRPEHCLSKVIETFGWRWGFVLFSYSWLVFLWIVQGALIRLCCGKLKPVERARATATVLGKVWSSFLFVNVVLAPEDVREWLLWLLWFSSTGLLKMLETVGKEHFEHVVENPRFGVGHTLRTLGLHAAVLYLGAHLARLGWNEFFEWGGGPIGQILLSPSPAVVDGDVIELNGNDGYGY----------------FGAAASTSTDPERGGTGFALLLLYDLAVIATEVGLSALKYTSNLLEL--HKDPDSAYTEEGSLEQTVFFTRLGQAILGASRTVYMFKSCGHCALVRKVCIRIMSTINGGQTFNRIHSAACRIVLAREMDVAFPDATEQELKTMAADESCAICLKTMT-SAKRASAE 364          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: F6VAW2_CIOIN (Uncharacterized protein n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6VAW2_CIOIN)

HSP 1 Score: 64.7 bits (156), Expect = 2.770e-7
Identity = 79/379 (20.84%), Postives = 150/379 (39.58%), Query Frame = 0
Query:   39 LVVLSYAWLAVLTVVQGTLIRLCCGRLRPVERGLATKAILGNVWRSLVFLNVVLAPKDVREWLFWVLWFSSTGLLALLETVGREHFEHVIDNPRAGVIHHLRTLSLHAVVLCLGVCLAQVGWGEFVEWGKGPVGQVLLSPSQTLAPTPISDNDYGDXXXXXXXXXXDGECSVDGSGFRDVVMISTDPERGGTGFALLLLYDLAVTGTEVLLSALKYVANLLELST----RKDADSAYTEEGSME----HITFLTRLGQAILSASRTVYTFKSCAHCTLVRKMLVRFITMVSGARAAQRIHRAAWRVVLAKEMDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLCPICRTAI 409
            LV+   A   +L ++   + +L  G+LR +ER          V+   +F+  V+  + + E + W+ WF++   L LL  + ++ FE +  +P   + +H + L L   ++    CL                   LL+ S                            C       +  +  ++ P          +L +  +   + L   ++Y  +L ++       + A   Y  + SME     I F+  L   +L +     +  S   C     M +R+I      R  +  H+   RVV    M+  FP+A++++++   +++ CAIC + M ++ ++L C HFFH+ CLR +L         CP C  A+
Sbjct:   86 LVLAVNATYCLLAIIVQIIQKLVFGKLRAIERQHMRDKFWNFVFYKFIFIFGVMNVQSLNEVIVWISWFTAIAFLLLLTKLCKDRFEFLSFSPNTPMYYHWKVLGLMGFII--SCCL-------------------LLTVS----------------------------CVT-----KSFMFQASSPSYSDIHSITFMLAECLIITVKSLHVIIRYCIHLYDIQHDELWERKATLVYHVDLSMELLSLSINFVHHLH--MLFSGNIWLSMASLVIC-----MQLRYIFSEIQKRLLR--HKNYRRVVA--NMEAQFPEATKEEIE--AQEDQCAICWEQM-ETARKLPCGHFFHSPCLRSWLEQDTT----CPTCSIAL 392          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: A0A2P2L5N1_RHIMU (Protein binding protein n=3 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2L5N1_RHIMU)

HSP 1 Score: 61.2 bits (147), Expect = 3.350e-6
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0
Query:  337 VLAKEMDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLCPICRTAI 409
            +  + +  A PDA+ Q+L+    D+ CAIC + M K+ K+L C H FH GCLR +L+   +    CP CR  +
Sbjct:  319 IALRSLHAALPDATSQELQAY--DDECAICREPMAKA-KKLHCNHLFHLGCLRSWLDQGLSEMYSCPTCRKPL 388          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: A0A0P1A973_PLAHL (Zinc finger partial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A973_PLAHL)

HSP 1 Score: 60.8 bits (146), Expect = 4.640e-6
Identity = 46/150 (30.67%), Postives = 69/150 (46.00%), Query Frame = 0
Query:  266 DADSAYTEEGSMEHITFLTRLGQAILSASRTVYTFKSCAHCTLVRKMLVRFITMVSGARAAQRIHRAAWRVVL----AKEMDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLC---PICRTA 408
            + D A++ E S  H+  L  +          +Y +         R  L   I +++   A  R+     RV L      ++D  FPDA+  +LK++ +D  CAICLK+M+ S K+L C H FH  CLRQ L   +    L    P+ R A
Sbjct:  234 EEDEAHSPENSEFHLLLLQTMLCGCYLVQLVLY-YLYVISVDQFRVSLFDLILILNVKNATMRLLDKVKRVKLYHQVVLDLDHLFPDATSDELKSVADD-VCAICLKSMSTSAKKLHCGHLFHQLCLRQCLQRASVSDVLTGMDPLTRMA 381          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: A0A3N6RF50_BRACR (Uncharacterized protein n=1 Tax=Brassica cretica TaxID=69181 RepID=A0A3N6RF50_BRACR)

HSP 1 Score: 59.3 bits (142), Expect = 4.660e-6
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  342 MDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLCPICRTAI 409
            +  A PDA+ ++L+    D+ CAIC + M K+ KRL C H FH GCLR +L+        CP CR  +
Sbjct:   14 LHAALPDATSEELRAY--DDECAICREPMAKA-KRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL 78          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: UPI000CECFFE5 (LOW QUALITY PROTEIN: E3 ubiquitin protein ligase RIN3 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CECFFE5)

HSP 1 Score: 59.3 bits (142), Expect = 1.200e-5
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  342 MDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLCPICRTAI 409
            +  A PDA+ ++L+    DE CAIC + M K+ KR+ C H FH GCLR +L+        CP CR  +
Sbjct:  316 LHAALPDATSEELRAF--DEECAICREPMAKA-KRIHCNHLFHLGCLRSWLDQGLNAVYSCPTCRKPL 380          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: A0A0D3DG09_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3DG09_BRAOL)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-5
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  342 MDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLCPICRTAI 409
            +  A PDA+ ++L+    D+ CAIC + M K+ KRL C H FH GCLR +L+        CP CR  +
Sbjct:  260 LHAALPDATSEELRAY--DDECAICREPMAKA-KRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL 324          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: UPI00053AFC8A (E3 ubiquitin protein ligase RIN2-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AFC8A)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-5
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  342 MDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLCPICRTAI 409
            +  A PDA+ ++L+    D+ CAIC + M K+ KRL C H FH GCLR +L+        CP CR  +
Sbjct:  318 LHAALPDATSEELRAY--DDECAICREPMAKA-KRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL 382          
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Match: RIN2_ARATH (E3 ubiquitin protein ligase RIN2 n=32 Tax=Brassicaceae TaxID=3700 RepID=RIN2_ARATH)

HSP 1 Score: 59.3 bits (142), Expect = 1.320e-5
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  342 MDVAFPDASEQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKPLCPICRTAI 409
            +  A PDA+ ++L+    D+ CAIC + M K+ KRL C H FH GCLR +L+        CP CR  +
Sbjct:  318 LHAALPDATSEELRAY--DDECAICREPMAKA-KRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL 382          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig136.2738.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KCR0_9PHAE1.240e-18657.86RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LFG6_ECTSI2.110e-14760.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F6VAW2_CIOIN2.770e-720.84Uncharacterized protein n=1 Tax=Ciona intestinalis... [more]
A0A2P2L5N1_RHIMU3.350e-638.36Protein binding protein n=3 Tax=Rhizophora mucrona... [more]
A0A0P1A973_PLAHL4.640e-630.67Zinc finger partial n=1 Tax=Plasmopara halstedii T... [more]
A0A3N6RF50_BRACR4.660e-641.18Uncharacterized protein n=1 Tax=Brassica cretica T... [more]
UPI000CECFFE51.200e-541.18LOW QUALITY PROTEIN: E3 ubiquitin protein ligase R... [more]
A0A0D3DG09_BRAOL1.230e-541.18Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
UPI00053AFC8A1.270e-541.18E3 ubiquitin protein ligase RIN2-like n=1 Tax=Came... [more]
RIN2_ARATH1.320e-541.18E3 ubiquitin protein ligase RIN2 n=32 Tax=Brassica... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 363..405
e-value: 3.6E-7
score: 39.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 362..406
e-value: 7.5E-9
score: 35.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 363..406
score: 12.312
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 336..412
e-value: 1.8E-14
score: 54.8
NoneNo IPR availablePANTHERPTHR15067:SF5E3 UBIQUITIN-PROTEIN LIGASE AMFRcoord: 37..159
NoneNo IPR availablePANTHERPTHR15067FAMILY NOT NAMEDcoord: 37..159
coord: 328..417
NoneNo IPR availablePANTHERPTHR15067:SF5E3 UBIQUITIN-PROTEIN LIGASE AMFRcoord: 328..417
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..120
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 161..231
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 95..99
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 121..140
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 256..545
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 232..255
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 141..160
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 357..412
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig136contigL-elsbetiae_contig136:23503..31367 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig136.2738.1mRNA_L-elsbetiae_contig136.2738.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig136 23503..31383 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig136.2738.1 ID=prot_L-elsbetiae_contig136.2738.1|Name=mRNA_L-elsbetiae_contig136.2738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=545bp
MIWDENHVDHACGTLLVRGGTIERCLYEVIDTIGWRWGLVVLSYAWLAVL
TVVQGTLIRLCCGRLRPVERGLATKAILGNVWRSLVFLNVVLAPKDVREW
LFWVLWFSSTGLLALLETVGREHFEHVIDNPRAGVIHHLRTLSLHAVVLC
LGVCLAQVGWGEFVEWGKGPVGQVLLSPSQTLAPTPISDNDYGDGGGGGG
GGLGDGECSVDGSGFRDVVMISTDPERGGTGFALLLLYDLAVTGTEVLLS
ALKYVANLLELSTRKDADSAYTEEGSMEHITFLTRLGQAILSASRTVYTF
KSCAHCTLVRKMLVRFITMVSGARAAQRIHRAAWRVVLAKEMDVAFPDAS
EQQLKNMPEDESCAICLKTMTKSVKRLECQHFFHTGCLRQYLNNTAAHKP
LCPICRTAIPWHPSVGGIKPSPDARLGGSGESEPAGGDVRSTTNNTGTAA
TTANDSDIGSRGGDERHSPPHLRFGPAVHGPPTPDGFSRAARGADSAVRM
VRQMLRFGLTGGGGGVAAPGGGAVPGGRARDVGTGREEFSPSTAT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD