prot_L-elsbetiae_contig1270.2167.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1270.2167.1
Unique Nameprot_L-elsbetiae_contig1270.2167.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length896
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A6H5L6K7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K7_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 7.570e-84
Identity = 443/796 (55.65%), Postives = 464/796 (58.29%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKLPQTVAFPGVEDDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSVLVSDVRMDPPAFIANRIRDGRLKMPWTEPTPPESCGAKAGRRKGAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRVLPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGHSKATQXXXXXXXXEGEXXXXXXXXXXXXXXGEQGEGVRLSSKMKVDANTDEGREALTRHVLHINIRSSHNVDSKARSRAKRSKVESKVYSCLESMFDEDEAKGLVVDPADGGSTPHSKTSSTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------YTHSSKANVGGTFQDKVFSEAARSKSLKIDHAALQRIMNVDGSLKQVDEDDDAMEEVFEDNLAPPPASXXXXXKNGKGYGGRGKSPLTPSLSSSXXSSTPAMVKPFAGSAVLPPARRGNTAGAXXXXXXXXXXAKGEATAAPVRRGGPKSHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGEKAIKDALALLAMGG 777
            MKRDFLASGRQPAG+CCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKLPQTVAFPGVED +A  XXXXXXXXXXXXXXX                               SVLVSD+RMDPPAFIANRIRDG LKMPWTE T  E+ GAK                                                           XXXXXXXXXXXXXXXXXXXXXXXXXXX        R+  PK       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXX   XXXXXXXXXXXXXX       RLSSKMKVDANT+EGREALTRHVLHI  R++    SKA+SRAKRSKVES+VYSCLE+MFDEDE +GL +D   GG            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                XXXXXXXXXXXXXXXXXXXX                                                          YT S    VG  F + +  EAA+SKSLKIDHAALQR+MN+DGSLKQV+E DD MEEVFEDNLAPP  S     KN KG  GRGKSPLT SLSSS   STPAM+KPF G AVLPPARRGNT              K        R GG +                               DGGEKAIKDALALL  GG
Sbjct:  236 MKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKLPQTVAFPGVEDASAAAXXXXXXXXXXXXXXXTAEK---------------------------SVLVSDIRMDPPAFIANRIRDGALKMPWTEQTVTETAGAKX----------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXRGVRPGVKRKRSPKDKAPRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARLSSKMKVDANTEEGREALTRHVLHI--RATKRGASKAKSRAKRSKVESEVYSCLENMFDEDEERGLSIDR--GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAKSPAPPASDETLKIRDGGAAGEDSGNKDQXXXXXXXXXXXXXXXXXXXXDGLEWGVYLRTEEDSDRTKKEWEKEHKDWVEDQTEKSRILSDETGLNPPGGVPKKKRKYTFSGSHAVGKNFGEAISLEAAKSKSLKIDHAALQRVMNLDGSLKQVNEGDDVMEEVFEDNLAPPVPS-----KNSKGIRGRGKSPLTASLSSS---STPAMLKPFTGGAVLPPARRGNTTATAACSDVGP---KAXXXXXXXRGGGKR----------VAPIAQPAAVVKAPWARAGPNDGGEKAIKDALALLKSGG 921
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A3Q1FK05_9TELE (TFIIB domain-containing protein n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1FK05_9TELE)

HSP 1 Score: 82.4 bits (202), Expect = 8.790e-15
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+PAG+C AAL +A R++   R+ +EI   VKVC+AT+RKRL+EFE TPTSQLT+EE  K+
Sbjct:   10 MKRDWMHTGRRPAGLCGAALLVAARLHDFRRTIKEIISIVKVCEATLRKRLVEFEDTPTSQLTIEEFMKV 79
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A8C1EH18_CYPCA (TFIIB domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1EH18_CYPCA)

HSP 1 Score: 80.1 bits (196), Expect = 5.070e-14
Identity = 38/70 (54.29%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+PAG+C AAL +A R++   R+ +E+ + VKVC+AT+RKRL EFE TPTS+LT+EE  ++
Sbjct:   10 MKRDWMHTGRRPAGLCGAALLVAARMHEFRRTIKEVIRVVKVCEATLRKRLNEFEDTPTSELTIEEFMRV 79
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A3P8RXA0_AMPPE (TFIIB domain-containing protein n=1 Tax=Amphiprion percula TaxID=161767 RepID=A0A3P8RXA0_AMPPE)

HSP 1 Score: 79.7 bits (195), Expect = 5.570e-14
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+P+G+C AAL +A R++   R+ +EI   VKVC+ T+RKRL+EFE TPTSQLT+EE  K+
Sbjct:   10 MKRDWMHTGRRPSGLCGAALLVAARLHDFRRTIKEIVSIVKVCETTLRKRLVEFEDTPTSQLTIEEFMKV 79
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A3Q3E5F3_9LABR (TFIIB domain-containing protein n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3E5F3_9LABR)

HSP 1 Score: 79.3 bits (194), Expect = 6.270e-14
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+P+G+C AAL +A R++   R+ +EI   VKVC+ T+RKRL EFE TPTSQLT+EE  K+
Sbjct:   10 MKRDWMHTGRRPSGLCGAALLVAARMHDFRRTIKEIVGVVKVCETTLRKRLTEFEGTPTSQLTIEEFMKV 79
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A8C0IRG5_CHEAB (TFIIB domain-containing protein n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0IRG5_CHEAB)

HSP 1 Score: 80.9 bits (198), Expect = 6.390e-14
Identity = 38/70 (54.29%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+P+G+C AAL +A R++   R+ +E+ + VKVC++T+RKRL EFE TPTSQLT+EE  K+
Sbjct:   10 MKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFEDTPTSQLTIEEFMKI 79
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A6I9PXS7_9TELE (transcription factor IIIB 90 kDa subunit-like n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9PXS7_9TELE)

HSP 1 Score: 80.5 bits (197), Expect = 8.700e-14
Identity = 39/70 (55.71%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+P+G+C AAL +A R++   R+ +EI   VKVC++T+RKRL+EFE TPTSQLT+EE  K+
Sbjct:   10 MKRDWMHTGRRPSGLCGAALLVAARMHDFRRTIKEIVGVVKVCESTLRKRLIEFEDTPTSQLTIEEFMKM 79
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A668S162_OREAU (TFIIB domain-containing protein n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668S162_OREAU)

HSP 1 Score: 79.7 bits (195), Expect = 8.770e-14
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+P+G+C AAL +A R++   R+ +EI   VKVC++T+RKRL EFE TPTSQLT+EE  K+
Sbjct:   10 MKRDWMHTGRRPSGLCGAALLVAARLHDFRRTVKEIVNIVKVCESTLRKRLTEFEDTPTSQLTIEEFMKV 79
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A8C1EGR3_CYPCA (TFIIB domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1EGR3_CYPCA)

HSP 1 Score: 80.1 bits (196), Expect = 8.770e-14
Identity = 38/70 (54.29%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+PAG+C AAL +A R++   R+ +E+ + VKVC+AT+RKRL EFE TPTS+LT+EE  ++
Sbjct:   10 MKRDWMHTGRRPAGLCGAALLVAARMHEFRRTIKEVIRVVKVCEATLRKRLNEFEDTPTSELTIEEFMRV 79
[Close]
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Match: A0A452VKK3_URSMA (BRF1 RNA polymerase III transcription initiation factor subunit n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VKK3_URSMA)

HSP 1 Score: 80.5 bits (197), Expect = 9.590e-14
Identity = 38/70 (54.29%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEELNKL 70
            MKRD++ +GR+P+G+C AAL +A R++   R+ +E+   VKVC++T+RKRL+EFE TPTSQLTV+E  K+
Sbjct:   10 MKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLMEFEDTPTSQLTVDEFMKI 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1270.2167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K7_9PHAE7.570e-8455.65TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A3Q1FK05_9TELE8.790e-1558.57TFIIB domain-containing protein n=1 Tax=Acanthochr... [more]
A0A8C1EH18_CYPCA5.070e-1454.29TFIIB domain-containing protein n=1 Tax=Cyprinus c... [more]
A0A3P8RXA0_AMPPE5.570e-1455.71TFIIB domain-containing protein n=1 Tax=Amphiprion... [more]
A0A3Q3E5F3_9LABR6.270e-1455.71TFIIB domain-containing protein n=1 Tax=Labrus ber... [more]
A0A8C0IRG5_CHEAB6.390e-1454.29TFIIB domain-containing protein n=1 Tax=Chelonoidi... [more]
A0A6I9PXS7_9TELE8.700e-1455.71transcription factor IIIB 90 kDa subunit-like n=1 ... [more]
A0A668S162_OREAU8.770e-1455.71TFIIB domain-containing protein n=1 Tax=Oreochromi... [more]
A0A8C1EGR3_CYPCA8.770e-1454.29TFIIB domain-containing protein n=1 Tax=Cyprinus c... [more]
A0A452VKK3_URSMA9.590e-1454.29BRF1 RNA polymerase III transcription initiation f... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 334..361
NoneNo IPR availableGENE3D1.10.472.10coord: 1..72
e-value: 3.6E-12
score: 48.3
NoneNo IPR availablePANTHERPTHR11618:SF40BRF1, RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR Acoord: 1..69
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..895
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..23
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 1..69
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 1..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1270contigL-elsbetiae_contig1270:869..11634 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1270.2167.1mRNA_L-elsbetiae_contig1270.2167.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1270 842..11634 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1270.2167.1 ID=prot_L-elsbetiae_contig1270.2167.1|Name=mRNA_L-elsbetiae_contig1270.2167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=896bp
MKRDFLASGRQPAGVCCAALTLATRVNRIERSKEEIRKAVKVCDATVRKR
LLEFEATPTSQLTVEELNKLPQTVAFPGVEDDAAAAAAASRAPAGDGGGD
AAADGSGQPASGAAGNGVGGAAAAAAAAAAGVSVLVSDVRMDPPAFIANR
IRDGRLKMPWTEPTPPESCGAKAGRRKGAKKAAGGGAASAGSVRPRGGTR
KHGDGGDKGGRGGGASAKKMSPPKRRGGTSREDDDSSSGSSSGGGSGSDD
DDDDEEEDEEEEGIAGRRVLPKRKAAAAAAAAVSKSSKASGDDETETDDG
DEDDEGGSGDEDDDSEYSSGEEEERDSDDDGPGHSKATQEAEEEEEEEGE
EEDEDGEEEEEDAEGEQGEGVRLSSKMKVDANTDEGREALTRHVLHINIR
SSHNVDSKARSRAKRSKVESKVYSCLESMFDEDEAKGLVVDPADGGSTPH
SKTSSTANTNAEGDGDGDSDGGTGSEKRPAAAAAAAGQGKRAANGHGRDR
GQAPTPAASDTDKDKGTGKDNGGGADDAEWGWGMYLRTEEDSDRTKKEWE
KEHQGWEDEQESKHNLQAETEAKNKKKRKYTHSSKANVGGTFQDKVFSEA
ARSKSLKIDHAALQRIMNVDGSLKQVDEDDDAMEEVFEDNLAPPPASSSS
SSKNGKGYGGRGKSPLTPSLSSSSSSSTPAMVKPFAGSAVLPPARRGNTA
GAGAGAGAAGVGAKGEATAAPVRRGGPKSHGGRGAGKGHQAAGGPAPVVK
APWARAGPDDGGEKAIKDALALLAMGGGLVDPPAASPASPALPGFSGVAG
ASAGATKAVPTAGGNSPAAVAAPAPAAPEVVETAGETNGAEEEGQEGGEA
GAEAVAGAAGAAAGEDDEEDDDEEDDEDALYGEIDDFDDPYGEEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000812TFIIB
IPR036915Cyclin-like_sf