prot_L-elsbetiae_contig1236.1936.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1236.1936.1
Unique Nameprot_L-elsbetiae_contig1236.1936.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length417
Homology
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 5.020e-86
Identity = 200/335 (59.70%), Postives = 225/335 (67.16%), Query Frame = 0
Query:   62 SSSAASAKPAAA-PVKWTLVEAVADTP--RKGKKGNGERARQGGRSSSSSLVDNWRQPRGGXXXXXXXSR----NSNQRNGQGRGXXXXXXXXXXXXXXXGAYVGGATYYPPN-NVGAENPSDEQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKVDPATVSEDAGTTSGVDATRPGETPEQKLSSAASASDAHDSKET----KARSGKGAAKKEAEASAEPAVQGEQQ----------------SISATAPAWTPGGAATD 368
            S S+ +AKP+A+ PVKWTLVEAVA+TP  R+ K  +    R+G  +  S    NW Q R GXXXXXXX      N  QR G G G       XXXXXXXXG YVGGATYYP   NVGAE+  +EQKAYMT++AV QIEFYFTVENLC+DIF+RSYMDEEGYIPIAFVANFPGVARFGVEL DITAGILASDTLQVDTENETMRMRE WEVWLLPNQATGKQGVPRYIKVDPA    D      V+ T P   P Q    AASA D   +++T    K  S  GA KKE ++   P  + EQQ                 ++  APAWTP GA+TD
Sbjct:    3 SGSSGNAKPSASTPVKWTLVEAVAETPEGRRHKHQSHAGQRKGPGARGSGYTGNWGQGRDGXXXXXXXXXXXXXNRGQRRGGGAGSRNNQGQXXXXXXXXG-YVGGATYYPTQANVGAES-FEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPAVSEADR-----VNGTEPSGIPAQTTQDAASAGDVPGAEDTQTSLKEDSTAGAEKKEGDSVTGPVAEEEQQRSSEKGQVSHEDAAKTELTPLAPAWTPVGASTD 330          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.120e-32
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 0
Query:  177 EQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKV 282
            E K      AV Q+E+YF+V NLC D+F+RSYMD EGYIP+AFVANFPG A  G E  DI   + +S+ L+ D  NETMR+RE W++W+LPN A+G  GVPRYIK+
Sbjct:    5 EAKKMAAEYAVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPN-ASGGLGVPRYIKL 109          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.710e-24
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = 0
Query:  177 EQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKV 282
            E +    + AV  IE  F+  +LC D ++R  MD EGYIP+AFVAN+P VA++G    D+ +GI +S+ L++D ENETMR+RE+W+ WL P+   G  G PRY+KV
Sbjct:   76 ENRHLFAASAVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPD-GKGGMGCPRYVKV 180          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC)

HSP 1 Score: 111 bits (278), Expect = 2.010e-24
Identity = 51/116 (43.97%), Postives = 79/116 (68.10%), Query Frame = 0
Query:  177 EQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGIL-ASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKVDPATVSEDA 291
            E + Y+ SMAV QIE+YF+V+NLC+D ++R+++DEEG++P+A + NFP VA F  + ++I   +  AS  L+ D  NET+R++E    WLLPN   G  G PR++K  P T  +++
Sbjct:   54 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPN-GRGGMGCPRWLKQAPDTPPQES 168          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: A0A7R9U3W9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3W9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.260e-24
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 0
Query:  175 SDEQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKVDPA--TVSEDAGTTSGVDA 299
            S+E +  + + AV  IE  F+  +LC D F+R +MD  GY+P+A VAN+  VA++G    D+ AG+  S+ LQ+D ENET+R+RE+WE WL P+   G  G PRY+KV P   T  + +G+T+  DA
Sbjct:  222 SNENRTMLAASAVRAIEMTFSPNHLCTDEFLRQHMDVAGYVPVALVANYSHVAQYGALYEDLLAGLANSELLQLDAENETVRLRENWEQWLFPD-GKGGMGCPRYVKVSPVPPTDQDASGSTADGDA 347          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: A0A4D9CXU2_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXU2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.150e-22
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 0
Query:  177 EQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGIL-ASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKVDPAT 286
            E + Y+ SMAV QIE+YF+V+NLC+D ++R+++DEEG++P+AF+ NFP VA F  +  +I   +   S  L+ D  NET+R++E    WLLPN   G  G PR++K  P T
Sbjct:  296 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLAFICNFPTVASFAADYLEIVKTLQEVSSVLEYDEANETLRLKEKATAWLLPN-GRGGVGCPRWLKQAPDT 405          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: G4ZF40_PHYSP (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZF40_PHYSP)

HSP 1 Score: 105 bits (262), Expect = 1.260e-22
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = 0
Query:  186 AVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKV 282
            A NQIEFYFT +NL +DIF+R +MD +G++P+AFV +F  V     + A +   +  S+TL++D +NE +R+RE W+ W+ PN A G  GVPRYIKV
Sbjct:  128 AKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQSETLELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKV 223          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: A0A7S2WWB5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWB5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.140e-22
Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 0
Query:  175 SDEQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKVD 283
            S E   Y+ ++AV Q+E+ F+V+NLC+D F+RS++D EGY+PIA V NFP +A  G    DI A + +S  L+VD  NET+R R+    W+ PN A      PR+IK+D
Sbjct:   28 SREDCRYLAALAVQQMEYLFSVQNLCQDTFLRSHLDSEGYMPIAIVCNFPHIAGIGAYYPDIIAALKSSKALEVDDTNETVRPRDKPHQWVFPNPA------PRWIKLD 130          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: A0A662WMH8_9STRA (HTH La-type RNA-binding domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMH8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.430e-22
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 0
Query:  157 YVGGATYYPPNNVGAENPSDEQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIK 281
            Y    TYY  N V   NP  +  A     A NQIEFYFT +NL +DIF+R +MD +G++P+AFV +F  V     +   +   +  S+T+++D +NE +R+R+ W+ W+ PN A G  GVPRYIK
Sbjct:   11 YDNNGTYY--NGVYVPNPDIQVSA---QWAKNQIEFYFTSDNLVRDIFMRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEVMKHSETVELDEQNEKIRLRDGWQKWVWPN-AEGGYGVPRYIK 129          
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Match: A0A662WKG7_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKG7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.150e-22
Identity = 56/135 (41.48%), Postives = 80/135 (59.26%), Query Frame = 0
Query:  157 YVGGATYYPPNNVGAENPSDEQKAYMTSMAVNQIEFYFTVENLCKDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDTENETMRMRESWEVWLLPNQATGKQGVPRYIKVDPATVSEDA 291
            Y    TYY  N V   NP  +  A     A NQIEFYFT +NL +DIF+R +MD +G++P+AFV +F  V     +   +   +  S+T+++D +NE +R+R+ W+ W+ PN A G  GVPRYIK +    S DA
Sbjct:  125 YDNNGTYY--NGVYVPNPDIQVSA---QWAKNQIEFYFTSDNLVRDIFMRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEVMKHSETVELDEQNEKIRLRDGWQKWVWPN-AEGGYGVPRYIKAEEEPSSADA 253          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1236.1936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK53_ECTSI5.020e-8659.70HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CAE4_9STRA1.120e-3257.55HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1UC17_9STRA1.710e-2448.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K8ZBX0_NANGC2.010e-2443.97Rna-binding la domain protein (Fragment) n=2 Tax=N... [more]
A0A7R9U3W9_9STRA4.260e-2444.09Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9CXU2_9STRA1.150e-2245.95HTH La-type RNA-binding domain-containing protein ... [more]
G4ZF40_PHYSP1.260e-2249.48HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S2WWB5_9STRA2.140e-2245.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662WMH8_9STRA2.430e-2242.40HTH La-type RNA-binding domain-containing protein ... [more]
A0A662WKG7_9STRA4.150e-2241.48HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 176..258
e-value: 3.6E-13
score: 59.7
IPR006630La-type HTH domainPFAMPF05383Lacoord: 187..236
e-value: 2.5E-13
score: 49.9
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 176..267
score: 18.081
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 170..266
e-value: 3.9E-19
score: 70.1
NoneNo IPR availablePANTHERPTHR22792:SF76LARP (RNA BINDING LA RELATED PROTEIN) HOMOLOGcoord: 71..283
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 71..283
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 180..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1236contigL-elsbetiae_contig1236:1125..5584 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1236.1936.1mRNA_L-elsbetiae_contig1236.1936.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1236 1125..5584 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1236.1936.1 ID=prot_L-elsbetiae_contig1236.1936.1|Name=mRNA_L-elsbetiae_contig1236.1936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=417bp
AEPIQGVRRFDKWACVAVLPFAAGGGVSKRERREARYRSSCRKKKSHVEG
GALRQRQDGSMSSSAASAKPAAAPVKWTLVEAVADTPRKGKKGNGERARQ
GGRSSSSSLVDNWRQPRGGGGGGGGPSRNSNQRNGQGRGRGYGRGRGYGH
GRGHGAYVGGATYYPPNNVGAENPSDEQKAYMTSMAVNQIEFYFTVENLC
KDIFIRSYMDEEGYIPIAFVANFPGVARFGVELADITAGILASDTLQVDT
ENETMRMRESWEVWLLPNQATGKQGVPRYIKVDPATVSEDAGTTSGVDAT
RPGETPEQKLSSAASASDAHDSKETKARSGKGAAKKEAEASAEPAVQGEQ
QSISATAPAWTPGGAATDKASSIALPHSSSATASDTAPPEKKGGDEIGDS
SSVTVGPKVPTDELNP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf