prot_L-elsbetiae_contig1208.1748.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1208.1748.1
Unique Name	prot_L-elsbetiae_contig1208.1748.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	121

Homology

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A6H5KSN1_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSN1_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 6.630e-72
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0

Query:    3 NRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFVRGG-GKGQPRRRR 120
            +RYEGRGGVFESVDVG  GGPQRSVEGWILFVRNVHEEAQEDDIMDKFSE+GAVKNLHVNLDRRTGFVKGYCLVEFEKK+EAQ AIDEMDGSQLL+QDISV+WAFV+GG G GQPRRRR
Sbjct:   74 DRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQAAIDEMDGSQLLDQDISVSWAFVKGGKGAGQPRRRR 192

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A7S2G621_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G621_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.670e-51
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 0

Query:    4 RYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFV-RGGGKGQPRR 118
            RY+GRGGVFESVD G  GGP +SVEGWILFVRNVHEEAQEDDI+DKFSE G V+N+HVNLDRRTGFVKGY LVEFE ++EA+ AI+ ++G +LL Q ISV WAF+  G GK + R+
Sbjct:   55 RYDGRGGVFESVDAGGEGGPLQSVEGWILFVRNVHEEAQEDDILDKFSESGDVRNIHVNLDRRTGFVKGYALVEFESREEAENAIETLNGEELLGQTISVDWAFLDAGSGKKKGRK 170

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A7S2DBP5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBP5_9STRA)

HSP 1 Score: 157 bits (397), Expect = 6.470e-47
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 0

Query:    3 NRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFVRGGGKGQPRRRR 120
            +RY+GRGG+FESV+     GP  SVEGWILF+R VHEEAQEDDI+DKF E G V+N+HVNLDRRTGFVKGY LVE+E  +EA  AI+  +G +LL Q ISV WAF+   GK  PRRRR
Sbjct:   44 DRYDGRGGIFESVETADGVGPAESVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWAFLSDSGK-HPRRRR 160

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A7S3GV69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV69_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.500e-46
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 0

Query:    3 NRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFVR 109
            +RY GRGGVFE++  G   GP +S+EGWI+FV NVH+EAQEDDI+DKFSE+G VKN+HVNLDRRTGFVKGY LVEFE+  +AQ AI  +DG +LL+Q I V WAF +
Sbjct:   53 DRYNGRGGVFENIQRGSGAGPLQSIEGWIVFVTNVHQEAQEDDILDKFSEYGTVKNIHVNLDRRTGFVKGYALVEFEELKDAQAAIQGLDGKKLLDQVIQVDWAFKK 159

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A813G6W1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G6W1_POLGL)

HSP 1 Score: 149 bits (377), Expect = 4.760e-44
Identity = 70/116 (60.34%), Postives = 86/116 (74.14%), Query Frame = 0

Query:    4 RYEGRGGVFESV-DVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFVRGGGKGQPRR 118
            RY G+ G F+S+ D G  GGP RS+EGW++ V  VHEEAQEDD+ + FSEFG +KNLH+NLDRRTGFVKGY  +E+E K EA  AI  MDG  LL+Q +SV WAF + GGK + RR
Sbjct:   34 RYAGKAGQFDSLQDDGGEGGPARSIEGWVVIVSGVHEEAQEDDVFEAFSEFGEIKNLHLNLDRRTGFVKGYAFIEYEAKQEADSAIKGMDGQALLDQKLSVQWAFTKAGGKRRGRR 149

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A7S2S198_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S198_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.180e-43
Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 0

Query:    4 RYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFV 108
            RYEGRGGVF+S+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF++FG V+N+ VNLDRRTGFVKGY L+E+ + DEA  A++ M+G ++L Q ISV WAF+
Sbjct:   52 RYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVKGYALIEYAEHDEAAKALEAMNGDEILGQTISVDWAFL 155

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A7S0E2Z3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2Z3_9CRYP)

HSP 1 Score: 146 bits (369), Expect = 1.030e-42
Identity = 68/118 (57.63%), Postives = 90/118 (76.27%), Query Frame = 0

Query:    3 NRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFVRGGGKGQPRRRR 120
            +RY G+ G FESVD     GP +SVEGWI+FV  +HEEA E+DI DKFSE+G +K + + LDRRTGFVKGY LVE+EKK EAQ AI++M+G++L+EQ ++V WAF +G  +G+   RR
Sbjct:   38 DRYAGKSGQFESVDTEGGPGPSKSVEGWIVFVMGIHEEANEEDIYDKFSEYGEIKQMQLPLDRRTGFVKGYALVEYEKKSEAQKAIEQMNGAELMEQTLTVDWAFSKGPIRGRASTRR 155

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A0G4H5U6_9ALVE (RRM domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H5U6_9ALVE)

HSP 1 Score: 146 bits (368), Expect = 1.180e-42
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 0

Query:    4 RYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFVR 109
            RYEG+GGVFES+    +G   +SVEGWI+ VR +HEEAQEDDI D FS +G +KNLH+NLDRRTGFVKGY L+E+E+ DEAQ AI  M+G +LL Q + V WAFVR
Sbjct:   40 RYEGQGGVFESLSHDASGTAAKSVEGWIVIVRGLHEEAQEDDIHDSFSGYGEIKNLHLNLDRRTGFVKGYALIEYEQFDEAQAAIHAMNGKELLSQPVHVDWAFVR 145

[Close]

BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: A0A813H4X5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H4X5_POLGL)

HSP 1 Score: 145 bits (367), Expect = 1.440e-42
Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 0

Query:    1 NRNRYEGRGGVFESV-DVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFVRGGGKGQPR 117
            N +RY G+ G FES+ D G  GGP RS+EGW++ V  VHEEAQEDD+ + FSEFG +KNLH+NLDRRTGFVKGY  +E+E K EA+ AI  MD   LL+Q +SV +AF + GG+ + R
Sbjct:   29 NDDRYAGKAGQFESIQDDGAEGGPARSIEGWVVVVSGVHEEAQEDDVFEAFSEFGEIKNLHLNLDRRTGFVKGYAFIEYESKQEAETAIKGMDSQSLLDQKLSVGFAFTKAGGRRKRR 146

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BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Match: UPI001F043FF2 (RNA-binding protein 8A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043FF2)

HSP 1 Score: 145 bits (367), Expect = 2.410e-42
Identity = 76/110 (69.09%), Postives = 82/110 (74.55%), Query Frame = 0

Query:   11 VFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQDISVTWAFVRGGGKGQPRRRR 120
              E+   G TG PQRSVEGWILFV NVHEEAQEDDI D FSEFG +KNL  NLDRRTGF+KGY LVEFE   EAQ A D ++GS+LLEQ ISV WAFVRG  K    RRR
Sbjct:   55 TIETEQGGETG-PQRSVEGWILFVTNVHEEAQEDDIYDLFSEFGDIKNLQANLDRRTGFMKGYALVEFETFKEAQAARDGLNGSELLEQKISVDWAFVRGSSKKSRSRRR 163

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1208.1748.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KSN1_9PHAE	6.630e-72	90.76	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S2G621_9STRA	3.670e-51	70.69	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2DBP5_9STRA	6.470e-47	65.25	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S3GV69_9STRA	3.500e-46	66.36	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A813G6W1_POLGL	4.760e-44	60.34	Hypothetical protein n=1 Tax=Polarella glacialis T...	[more]
A0A7S2S198_9STRA	5.180e-43	65.71	Hypothetical protein n=2 Tax=Rhizochromulina marin...	[more]
A0A7S0E2Z3_9CRYP	1.030e-42	57.63	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]
A0A0G4H5U6_9ALVE	1.180e-42	64.15	RRM domain-containing protein n=1 Tax=Chromera vel...	[more]
A0A813H4X5_POLGL	1.440e-42	57.63	Hypothetical protein n=1 Tax=Polarella glacialis T...	[more]
UPI001F043FF2	2.410e-42	69.09	RNA-binding protein 8A-like n=1 Tax=Xenia sp. Carn...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008111	RNA-binding motif protein 8	PRINTS	PR01738	RNABINDINGM8	coord: 77..93 score: 40.59 coord: 21..35 score: 84.67 coord: 95..107 score: 50.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 31..104 e-value: 8.8E-18 score: 75.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 32..99 e-value: 5.2E-18 score: 64.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 30..108 score: 15.357
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..116 e-value: 8.3E-28 score: 99.3
None	No IPR available	PANTHER	PTHR45894	FAMILY NOT NAMED	coord: 9..114
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 22..119

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1208	contig	L-elsbetiae_contig1208:15564..17809 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1208.1748.1	mRNA_L-elsbetiae_contig1208.1748.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1208 15564..19368 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1208.1748.1 ID=prot_L-elsbetiae_contig1208.1748.1|Name=mRNA_L-elsbetiae_contig1208.1748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
NRNRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKF
SEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKDEAQLAIDEMDGSQLLEQD
ISVTWAFVRGGGKGQPRRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008111	RNA-bd_8
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf