prot_L-elsbetiae_contig1153.1342.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1153.1342.1
Unique Nameprot_L-elsbetiae_contig1153.1342.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length280
Homology
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BLAST of mRNA_L-elsbetiae_contig1153.1342.1 vs. uniprot
Match: D8LBV1_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV1_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.450e-55
Identity = 174/296 (58.78%), Postives = 189/296 (63.85%), Query Frame = 0 
Query:    1 MMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRALDHLRVDHDGAGQRAGSSSGGNGKARNKSKPRGXXXXXXXXXXXXXX-----MFNFLNKTMHTSMNKGKAVAAAASATGAGRSSGRLLLAERRAGPGLSVLGAAGSGSFSSSAI-----------AGAADS-ARKKMALFPEKDKRXXXXXXXXXXXXXXXSGMSQLELRSHLVEAREAEATLAAKIGRLQETIARNSERDPRTAAQARKKLEEVRLQAKEVRASRDRAEGMLGNRGLDGGGVGGGSKSGKKGRGKGSLFSF 279
            MMNRMGYRRGEGLGKEKQGISRPVPIRVLPERR LDHLRVD  G G+ A  S GG+GK         XXXXXXXXXXXXXX     MFNFLNKTMH SM+K KA                   A    G  +  L  AG  S+SSSA            AGA  + A +K  +FP+K +   XXXXXXXXXXXXX  MSQ ELRSHLV AREAEATLAAKIGRL+ETI+RN E DPRTAAQAR+KL++V  QAKEVR SR RAE  L NRG      GGG         K  LFSF
Sbjct:   41 MMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKTA-RSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMSKRKA-----------EGXXXXXXASPLPGQRIRPLFDAGGASYSSSAATSTSIPTATTAAGAGTAHALRKSGVFPDKKRDGGXXXXXXXXXXXXXXRMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRG-----GGGGKXXXXXXXXKAGLFSF 319
[Close]
BLAST of mRNA_L-elsbetiae_contig1153.1342.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.280e-45
Identity = 140/261 (53.64%), Postives = 158/261 (60.54%), Query Frame = 0 
Query:    1 MMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRALDHLRVDHDGAGQRAGSSSGGNGKARNKSKPRGXXXXXXXXXXXXXX-----MFNFLNKTMHTSMNKGKAVAAAASATGAGRSSGRLLLAERRAGPGLSVLGAAGSGSFSSSAIAGAADSAR--KKMALFPEKDKRXXXXXXXXXXXXXXXSGMSQLELRSHLVEAREAEATLAAKIGRLQETIARNSERDPRTAAQARKKLEEVRLQAKEVRASRDRAEGMLGNRG 254
            MMNRMGYRRGEGLGKEKQGISRPVPIRVLPERR LDHLRVD  G G+ A  S GG+G          XXXXXXXXXXXXXX     MFNFLNKTMH SM K                     L     G       ++ S S  ++  A  A +A   +K  +  + ++                + MSQ ELRSHLV AREAEATLAAKIGRL+ETI+RN E DPRTAAQAR+KL++V  QAKEVR SR RAE  L NRG
Sbjct:  376 MMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKSA-RSVGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMRKXXXXXXXXXXXXXXXXXXXXRLLFDAGGDSYPSCASSSSTSIPTATTATGAGTAHPLRKSGVLSDTNRDGGGAGVGRAGVGGAAARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRG 635
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1153.1342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBV1_ECTSI1.450e-5558.78G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KPC0_9PHAE2.280e-4553.64Zinc finger CCCH-type with G patch domain-containi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 222..249
NoneNo IPR availablePANTHERPTHR46297FAMILY NOT NAMEDcoord: 1..244
IPR000467G-patch domainPFAMPF01585G-patchcoord: 1..36
e-value: 3.8E-9
score: 36.3
IPR000467G-patch domainPROSITEPS50174G_PATCHcoord: 1..40
score: 12.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1153contigL-elsbetiae_contig1153:3523..5063 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1153.1342.1mRNA_L-elsbetiae_contig1153.1342.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1153 2481..6782 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1153.1342.1 ID=prot_L-elsbetiae_contig1153.1342.1|Name=mRNA_L-elsbetiae_contig1153.1342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=280bp
MMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRALDHLRVDHDGAGQRAG
SSSGGNGKARNKSKPRGSSNHRQGGGGGGGGMFNFLNKTMHTSMNKGKAV
AAAASATGAGRSSGRLLLAERRAGPGLSVLGAAGSGSFSSSAIAGAADSA
RKKMALFPEKDKRGGGAGGGRAAAAAAASGMSQLELRSHLVEAREAEATL
AAKIGRLQETIARNSERDPRTAAQARKKLEEVRLQAKEVRASRDRAEGML
GNRGLDGGGVGGGSKSGKKGRGKGSLFSF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom