prot_L-elsbetiae_contig11493.1311.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11493.1311.1
Unique Nameprot_L-elsbetiae_contig11493.1311.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length230
Homology
BLAST of mRNA_L-elsbetiae_contig11493.1311.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 7.700e-83
Identity = 171/237 (72.15%), Postives = 189/237 (79.75%), Query Frame = 0
Query:    1 DGRLSILRLEQLLKGKITSNTTFRVKAATGGIGIGGG----SGGHSQQLENDVEAVLVGCLRRLRVVRPAGMFELLAAIEVLRFELEHRPALVVVDGMGSFFWQDKMAQSCGGDAVSMQGAVVKALVRLAMERPVVLFAAKGALFLPRGNGSSSSSSSNRDAVEHREYLPQAWQRAVTFRVLLQRRQKRPRSSXXXXXXXXXXXXXXXAVSLFTARVLSLN--RGD-GGGASAFKGA 230
            DGRLSILRLEQLLKGKI++NTTF+VK+A+GG+G GGG    S    QQL++D+E VL+GCLRRLRVVRPAG+FELLAAIEVLRFEL HRPA+VVVDGMGSFFWQDKMAQSCGG+AVSMQG V KALVRL MERPVVLFAAK        NG     +    A EHREYLPQ WQRAVTFRVLLQR        XXXXXXXXXXXXXXXA+SLFTARVLSL   +G+ GGG  +FK A
Sbjct:   94 DGRLSILRLEQLLKGKISNNTTFQVKSASGGVGGGGGTIHASPSRLQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAK--------NGKDLGDA----ATEHREYLPQIWQRAVTFRVLLQRXXXXX-XXXXXXXXXXXXXXXXXALSLFTARVLSLRLAKGNYGGGGGSFKAA 317          
BLAST of mRNA_L-elsbetiae_contig11493.1311.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.100e-44
Identity = 81/107 (75.70%), Postives = 93/107 (86.92%), Query Frame = 0
Query:    1 DGRLSILRLEQLLKGKITSNTTFRVKAATGGIGIGG----GSGGHSQQLENDVEAVLVGCLRRLRVVRPAGMFELLAAIEVLRFELEHRPALVVVDGMGSFFWQDKM 103
            DGRLSILRLEQLLKGKI++NTTF+VK+A+GGIG        S    QQL++D+E VL+GCLRRLRVVRPAG+FELLAAIEVLRFEL HRPA+VVVDGMGSFFWQDK+
Sbjct:   94 DGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKV 200          
BLAST of mRNA_L-elsbetiae_contig11493.1311.1 vs. uniprot
Match: D8SIY5_SELML (RECA_2 domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SIY5_SELML)

HSP 1 Score: 69.3 bits (168), Expect = 3.750e-10
Identity = 63/196 (32.14%), Postives = 90/196 (45.92%), Query Frame = 0
Query:    1 DGRLSILRLEQLLKGKITSNTTFRVKAATGGIGIGGGSGGHSQQLENDVEAVLVGCLRRLRVVRPAGMFELLAAIEVL-----RFELEHRPA---LVVVDGMGSFFWQDKMAQSCGGDAVSMQGA--------VVKALVRLAMERPVVLFAAKGALFLPRGNGSSSSSSSNRDAVEHREYLPQAWQRAVTFRVLLQ 180
            DGR  I RL  +LK +I  N   +   A+  I            LE   E VL   LRR   +R    FE LA+++ L     R   EH      LV++DG+GSF+W D M+ SC     S +          +V+ L  L   +  ++ A K  L+ P    + +S       +++REY+P AWQR VT R+ LQ
Sbjct:  155 DGRFDIARLTSVLKARI--NAAHKDDTASNSI-----------CLEEQGEEVLRASLRRFYCLRCFKSFEFLASLKSLHIQSSRISQEHHGKAVQLVLIDGIGSFYWLDWMS-SCAAAYTSRRTLGVQRFSELIVQELRNLRNTKLFLVLATKALLYAPPKRKAIAS------RIQYREYMPAAWQRFVTHRLFLQ 330          
BLAST of mRNA_L-elsbetiae_contig11493.1311.1 vs. uniprot
Match: B3RU80_TRIAD (RECA_2 domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RU80_TRIAD)

HSP 1 Score: 62.0 bits (149), Expect = 8.850e-8
Identity = 36/135 (26.67%), Postives = 69/135 (51.11%), Query Frame = 0
Query:   56 CLRRLRVVRPAGMFELLAAIEVLRFELEHRP--ALVVVDGMGSFFWQDKMAQSCGGDAVSMQGAVVKALVRLAMERPVVLFAAKGALFLPRGNGSSSSSSSNRDAV---------EHREYLPQAWQRAVTFRVLL 179
            CL R  ++R   + +L+ ++ +L + +   P   ++++DG+GSF+WQDK + S G D +       K +  L  E  +++ A K A+     N   ++ S  R+ +         +H EY+P  W++ V +R +L
Sbjct:  124 CLERFYIIRCDTIHQLITSLHLLEYSISSNPDIGIMLIDGIGSFYWQDKFSSSSGVDQLC------KIVKYLCDEHNLIVLATKSAIRKQFENSRLANKSRLRNDIASNYNSTHSKHMEYMPNVWRKLVKYRYIL 252          
BLAST of mRNA_L-elsbetiae_contig11493.1311.1 vs. uniprot
Match: UPI001BB26B19 (DNA repair protein XRCC2-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB26B19)

HSP 1 Score: 61.6 bits (148), Expect = 1.620e-7
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 0
Query:   46 ENDVEAVLVGCLRRLRVVRPAGMFELLAAIEVLRFELEHRP--ALVVVDGMGSFFWQDKMAQSCGGDAVSMQGAVVKA----LVRLAMERPVVLFAAKGALFLPR-----------------GNGSSSSSSSNRDAVEHREYLPQAWQRAVTFRVLLQRR 182
            E +VEA +  CL+RL +V+ A   +L+  +  L   L  +   +++++D + +F+W D+M     GD    QG   K     L RL  +  +VLFA K AL   +                  + +SSS+SS + + EH E++ Q W + VT R++L++R
Sbjct:  178 EEEVEAFIKACLKRLYIVKIASSNQLVITLHSLESLLASQCDISVLMLDSVSAFYWLDRMK----GDGAHHQGVNQKLAFTILSRLVQDYHLVLFATKAALVAKQPQNEFWSRLDSASETDCSHRTSSSTSSLKLSTEHHEFMGQEWTKLVTHRLVLEQR 333          
BLAST of mRNA_L-elsbetiae_contig11493.1311.1 vs. uniprot
Match: UPI000D1C81AE (DNA repair protein XRCC2 homolog isoform X1 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C81AE)

HSP 1 Score: 60.1 bits (144), Expect = 5.500e-7
Identity = 58/188 (30.85%), Postives = 84/188 (44.68%), Query Frame = 0
Query:    1 DGRLSILRLEQLLKGKITSNTTFRVKAATGGIGIGGGSGGHSQQLENDVEAVLVGCLRRLRVVRPAGMFELLAAIEVL-----RFELEHRPA---LVVVDGMGSFFWQDKMAQSCGGDAVSMQGA--------VVKALVRLAMERPVVLFAAKGALFLPRGNGSSSSSSSNRDAVEHREYLPQAWQRA 172
            DGR  I RL  +LK +I  N   +   A+  I            LE   E VL   LRR   +R    FE LA+++ L     R   EH      LV++DG+GSF+W D M+ SC     S +          +V+ L  L   +  ++ A K  L+ P    + +S       +++REY+P AWQ A
Sbjct:  155 DGRFDIARLTSVLKARI--NEAHKDDTASNSI-----------CLEEQGEEVLRASLRRFYCLRCFKSFEFLASLKSLHIQSSRISQEHHGKAVQLVLIDGIGSFYWLDWMS-SCAAAYTSRRTLGVQRFSELIVQELRNLRNTKLFLVLATKALLYAPPKRKAIAS------RIQYREYMPAAWQNA 322          
BLAST of mRNA_L-elsbetiae_contig11493.1311.1 vs. uniprot
Match: W7U480_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U480_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.050e-6
Identity = 49/177 (27.68%), Postives = 78/177 (44.07%), Query Frame = 0
Query:   17 ITSNTTFRVKAATGGIGIGGGSGGHSQQLENDVEAVLVGCLRRLRVVRPAGMFELLAAIEVLRFELEH-----RPALVVVDGMGSFFWQDKMAQSCGGDAVSMQGAVVKALVRLAMERPVVLFAAKGALFLPR---------GNGSSSSSSSNRDAVEHREYLPQAWQRAVTFRVLL 179
            I+ N  FR     G IG    S G  Q  E+         + ++ +VR     E  + +E L+++L+       P LVV+D +GS F++ K A+SC          + + + R+A  + V + A K ALF  +         G     +       +EH+EY+P  W R VT R+ L
Sbjct:  168 ISGNNGFRA-TTMGSIGTPD-SAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTL 342          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11493.1311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE7.700e-8372.15Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI3.100e-4475.70Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8SIY5_SELML3.750e-1032.14RECA_2 domain-containing protein n=3 Tax=Selaginel... [more]
B3RU80_TRIAD8.850e-826.67RECA_2 domain-containing protein n=2 Tax=Trichopla... [more]
UPI001BB26B191.620e-730.00DNA repair protein XRCC2-like n=1 Tax=Lytechinus v... [more]
UPI000D1C81AE5.500e-730.85DNA repair protein XRCC2 homolog isoform X1 n=1 Ta... [more]
W7U480_9STRA1.050e-627.68Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..194
e-value: 3.4E-12
score: 48.5
IPR030547DNA repair protein XRCC2PANTHERPTHR46644FAMILY NOT NAMEDcoord: 1..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11493contigL-elsbetiae_contig11493:2071..5614 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11493.1311.1mRNA_L-elsbetiae_contig11493.1311.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11493 2069..5614 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11493.1311.1 ID=prot_L-elsbetiae_contig11493.1311.1|Name=mRNA_L-elsbetiae_contig11493.1311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
DGRLSILRLEQLLKGKITSNTTFRVKAATGGIGIGGGSGGHSQQLENDVE
AVLVGCLRRLRVVRPAGMFELLAAIEVLRFELEHRPALVVVDGMGSFFWQ
DKMAQSCGGDAVSMQGAVVKALVRLAMERPVVLFAAKGALFLPRGNGSSS
SSSSNRDAVEHREYLPQAWQRAVTFRVLLQRRQKRPRSSGEGHGGGGGGG
GGGGAVSLFTARVLSLNRGDGGGASAFKGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030547XRCC2