prot_L-elsbetiae_contig11450.1275.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11450.1275.1
Unique Nameprot_L-elsbetiae_contig11450.1275.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length101
Homology
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: A0A6H5JR04_9PHAE (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.690e-63
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGGGGRGR 101
            MKLVRFLMKMNNETVTVELKNGTTVHGTV+SVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDG  GRGR
Sbjct:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGR 101          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: A0A835YYQ8_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.170e-49
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGGG 97
            MKLVRFLMK+NNETVT+ELKNGTTVHGTV+ VDV+MNTHLK VKVTPKG+N    D+LSIRGNNIRCYILPDN+NLDQLLIDDAPK KPG  K G G
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTVHGTVAGVDVNMNTHLKGVKVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAGAG 97          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: T0RK40_SAPDV (Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 150 bits (379), Expect = 3.720e-45
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 88
            MKLVRFLMK++NETVT+ELKNGT VHGTV+ VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIRCYILPD+LNLD LLIDD PKQK
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTVVHGTVTGVDISMNTHLKAVKMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: A0A7S2FU32_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.230e-45
Identity = 76/101 (75.25%), Postives = 86/101 (85.15%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGGGGRGR 101
            MKLVRFLMK+NNETVT+ELKNGT V GTV+ VDV+MNT++KNVKVT KGKN   YD+LSIRGNNIR Y+LPD++NLD LLIDDAPKQK  KV  GG G GR
Sbjct:   22 MKLVRFLMKLNNETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPGR 122          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: A0A024TLD1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.400e-43
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 88
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:    1 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 88          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: W7T3T7_9STRA (Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3T7_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.260e-43
Identity = 77/102 (75.49%), Postives = 85/102 (83.33%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKVKDGGGGRG 100
            MKLVRFLMK+NNETVT+ELKNGTT+ GT+S VDVSMNT+LKNVKVT KGKNP +Y+SLSIRGNNIR YILPD LNLD LL+DD PK K  PG      GGRG
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQA---GGRG 99          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: A0A397E2M2_9STRA (Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397E2M2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.640e-43
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 88
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:   32 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 119          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: A0A7S2SJR6_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.690e-43
Identity = 76/100 (76.00%), Postives = 84/100 (84.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDG-GGGR 99
            MKLVRFLMK+N ETVT+ELKNGT V GTV+ VDV+MNT++KNVK+T KGKN   YDSLSIRGNNIR YILPDNLNLD LLIDD PK KP KV+ G  GGR
Sbjct:   23 MKLVRFLMKLNKETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTGMSGGR 122          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: K3WSY3_GLOUD (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY3_GLOUD)

HSP 1 Score: 145 bits (366), Expect = 6.790e-43
Identity = 72/101 (71.29%), Postives = 85/101 (84.16%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGGGGRGR 101
            MKLVRFLMK++NETVT+ELKNGT VHGT++ VD+SMNTHLK+VK+T KGKNP + DSLSIRGNNIR YILPD+LNLD LLI+D P++K        GGRGR
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKSVKMTVKGKNPVSLDSLSIRGNNIRYYILPDSLNLDTLLIEDTPREKVKAGAPAAGGRGR 101          
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Match: A0A7S2V5U0_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5U0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.320e-42
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKVKDGGGG 98
            MKLVRFLMK+NNETVT+ELKNGT VHGTV+ VDVSMNT+L+NVK+T K KNP + ++LSIRGNNIR Y+LPDNLNLD LLIDD PKQK  PG    GG G
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTVAGVDVSMNTYLRNVKMTVKQKNPVSLETLSIRGNNIRYYLLPDNLNLDTLLIDDTPKQKVRPGVAMRGGRG 100          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11450.1275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR04_9PHAE3.690e-6397.03Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ecto... [more]
A0A835YYQ8_9STRA7.170e-4981.44Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Trib... [more]
T0RK40_SAPDV3.720e-4582.95Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Sapr... [more]
A0A7S2FU32_9STRA5.230e-4575.25Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
A0A024TLD1_9STRA1.400e-4381.82Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Apha... [more]
W7T3T7_9STRA2.260e-4375.49Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nann... [more]
A0A397E2M2_9STRA3.640e-4381.82Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Apha... [more]
A0A7S2SJR6_9STRA3.690e-4376.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhiz... [more]
K3WSY3_GLOUD6.790e-4371.29Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Glob... [more]
A0A7S2V5U0_9STRA1.320e-4274.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 2.1E-16
score: 70.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..68
e-value: 6.6E-19
score: 67.4
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 5.3E-36
score: 124.0
NoneNo IPR availablePANTHERPTHR23338:SF18SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..99
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..99
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11450contigL-elsbetiae_contig11450:555..4073 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11450.1275.1mRNA_L-elsbetiae_contig11450.1275.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11450 555..4073 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11450.1275.1 ID=prot_L-elsbetiae_contig11450.1275.1|Name=mRNA_L-elsbetiae_contig11450.1275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGK
NPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGGGGRG
R
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf