prot_L-elsbetiae_contig11311.1168.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11311.1168.1
Unique Nameprot_L-elsbetiae_contig11311.1168.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1040
Homology
BLAST of mRNA_L-elsbetiae_contig11311.1168.1 vs. uniprot
Match: D7G2A2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A2_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 4.290e-54
Identity = 275/611 (45.01%), Postives = 310/611 (50.74%), Query Frame = 0
Query:    1 MSFSSFREVWRSRRLSVLHFSVSKRCDERAVLQASFSVALDLLLLAKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPAHEIGPGSLPFQIGALYALYCLHGTQLHSP-PMPVRVSAEAMVALLQREE---RSREVESAMAEEARRVAREXXXXXXXXXXXXXXXXXXXXXXXXWGPRARTEAAVESLSGPIKRLSSTYKEYVAALAEAGVSSISTPPPAAAD----------------TNNTVRQIPPEDHRIEQFGRDLATILERSQQKQPLPETYGLGELGPH-----RLRAASSPLPPPSHPP-MQGVPLPPLPELPHRF---VGFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGRSMVASGVRDNIRLLQMELNAGKGEESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWISDAENDDNSRATSQGRSIGVSRKRPRPSG-GFAVRATFGLPPGLGSARPTVKPAATPA 581
            MSFSSFR+VW+SR+LSVLHF+V +R +E A+LQ SFSVALDLL+                                         XXXXXXXXXXXXXXXXX                 XXXX                  XXXXXXXXXXX    XXXXXXXXXXXXXXXX            TLPAHE GPGSLPFQIGALYALYCLHGTQL S  PMPVRVS EAM+AL+Q +E   RSRE E+AMA+EAR  AR                         WGPRAR EAAVE++S PIK LSSTY+EY AALAEA V +I+T   + AD                 NNTV        R E FGRDLA IL+R+++KQPL + +GL EL  H     +L AA +    PSHPP  + +PLP LPE  HR    VG                           XXXXXXXXXXXXXXXXX ++   MVASGVRDNIRLLQMELNAG  EE D                                    EW+SD    DN    S  +S   +   P   G G A  ATFGLP   G  R   +  AT A
Sbjct:   61 MSFSSFRDVWQSRKLSVLHFAVPRRVNENALLQLSFSVALDLLM------------------------KDDEHNAGEDEMDPDGEXXXXXXXXXXXXXXXXXRAKQPPRGKRADAGGRGXXXXGRSITGARGGGVTQQAAAXXXXXXXXXXXGDAAXXXXXXXXXXXXXXXXSSPTATPVDLPPTLPAHETGPGSLPFQIGALYALYCLHGTQLFSSAPMPVRVSPEAMLALVQAQEAEIRSREAEAAMAKEARAAAR--AKRVLEEEMSTGTPPSGAAQASSWGPRARVEAAVEAVSEPIKGLSSTYREYAAALAEARVPTITTAGTSPADXXXXXXXXXSTMGDAGNNNTVGGHTAG--RSEWFGRDLAAILDRTRRKQPLLDPHGLKELALHPPPPPQLEAACATSGSPSHPPAFRALPLPVLPETLHRLGWRVGKTARTSVVSAKEEARSSMKARSKAKRNXXXXXXXXXXXXXXXXXXTSQGPMVASGVRDNIRLLQMELNAGTDEEGDDSSSNSSSGERESAREGGVGAGQEGEVVD-------EWMSD----DNYGLPSGVQSRVTTGSPPARGGAGSAKSATFGLPSAPGVPRSAAEKKATAA 632          
BLAST of mRNA_L-elsbetiae_contig11311.1168.1 vs. uniprot
Match: A0A6H5KTD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.470e-34
Identity = 301/700 (43.00%), Postives = 341/700 (48.71%), Query Frame = 0
Query:    1 MSFSSFREVWRSRRLSVLHFSVSKRCDERAVLQASFSVALDLLLLAKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPAHEIGPGSLPFQIGALYALYCLHGTQLHSP-PMPVRVSAEAMVAL--------------------LQR-------------------------------------------------------------------------EERSREVESAMAEEARRVAREXXXXXXXXXXXXXXXXXXXXXXXXWGPRARTEAAVESLSGPIKRLSSTYKEYVAALAEAGVSSISTPPPAAAD----------------TNNTVRQIPPEDHRIEQFGRDLATILERSQQKQPLPETYGLGELGPH------------RLRAASSPLPPPSHPP-MQGVPLPPLPELPHRF---VG--FRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGRSMVASGVRDNIRLLQMELNAGKGEESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWISDAENDDNSRATSQGRS-IGVSRKRPRPSGGFAVRATFGLPPGLGSAR 571
            MSFSSFR+VW+SR+LSVLHF+V +R +E A+LQ SFSVALDLL+                                           XXXXXXXXXXXXXXXXXXXXX   X XX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           TLPA E GPGSLPFQIGALYALYCLHGTQL S  PMP+RVS+EAM+AL                    L R                                                                         E +SREVE+AMA+EAR  AR                         WGPRAR EAAVE++S  IK LSSTY+EY AALAEA V +I+T   + AD                 +NTV        R E FGRDL  IL+R+++K+P  + +GL EL  H             L A  +    PSHPP  + +PLP LPE  H+    VG   R                          XXXXXXXXXXXXXXXX ++  SMVASGVRDNIRLLQMELNAG  EESDXXXXXXX                             E + +  +D+N    S  +S +   R  PR   G A  ATFGLP   G  R
Sbjct:   61 MSFSSFRDVWQSRKLSVLHFAVPRRVNESALLQLSFSVALDLLM--------------------------KDDEHNAVEDEMDPDGEXXXXXXXXXXXXXXXXXXXXXHRKXAXXGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPTATPVDPPPTLPALETGPGSLPFQIGALYALYCLHGTQLFSSAPMPIRVSSEAMLALSRLRWRLKAAGPQALDALAVLSRLVLGDGCNPGGGDGVXXXXXXXXXXXXXXXXXXXTRGGSALQAAAYTGPCSLAFVESNISTTSMTSKAQAQEVETKSREVEAAMAKEARAAAR--ARTALEGEMSTGTPPSGAAQTSSWGPRARVEAAVEAVSEQIKGLSSTYREYAAALAEARVPTITTAGTSPADDDXXXXXXGSTMDDAGNSNTVGGHTAG--RSEWFGRDLEAILDRTRRKKPFLDPHGLKELALHPPXXXXXXXXXXHLEADCATSESPSHPPAFRALPLPVLPETLHKLGWRVGKTARTSVVSAKEEARSSMKARSKAKRNGGVXXXXXXXXXXXXXXXXXASQGSMVASGVRDNIRLLQMELNAGTDEESDXXXXXXXSGEREPAREGGVGSGQEG-----------EEVDECMSDENYGLPSGVQSRVTTGRGPPRGGAGSAKCATFGLPSAPGVPR 719          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11311.1168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2A2_ECTSI4.290e-5445.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTD5_9PHAE2.470e-3443.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43PFAMPF09808SNAPc_SNAP43coord: 2..236
e-value: 9.7E-8
score: 32.2
IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43PANTHERPTHR15131SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1coord: 1..614

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11311contigL-elsbetiae_contig11311:1026..5231 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11311.1168.1mRNA_L-elsbetiae_contig11311.1168.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11311 1014..6312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11311.1168.1 ID=prot_L-elsbetiae_contig11311.1168.1|Name=mRNA_L-elsbetiae_contig11311.1168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1040bp
MSFSSFREVWRSRRLSVLHFSVSKRCDERAVLQASFSVALDLLLLAKTED
GGEQEGGGGGGGRGAASSHDDAERNDDNSGGGGGGGDDGNNGDDDDNDAE
SDDCGGRGGRSKRPRQPPRARKGSKGRAASEERAGGAVVSPVVAAAAAAA
AAAAAAAAAAAAAAAASTATAAAAAAAAPAGPPPTLPAHEIGPGSLPFQI
GALYALYCLHGTQLHSPPMPVRVSAEAMVALLQREERSREVESAMAEEAR
RVAREESAETADAGPPAARGSSAAAETSGWGPRARTEAAVESLSGPIKRL
SSTYKEYVAALAEAGVSSISTPPPAAADTNNTVRQIPPEDHRIEQFGRDL
ATILERSQQKQPLPETYGLGELGPHRLRAASSPLPPPSHPPMQGVPLPPL
PELPHRFVGFRGGGGGMMAKKPAAALPGAQAGGGRSDGGRGGGGGGGGGD
KKKNSAGRSMVASGVRDNIRLLQMELNAGKGEESDDSSSSSSSSSNEKKR
PSEGGGLRRGEEEEEEEEEDDEWISDAENDDNSRATSQGRSIGVSRKRPR
PSGGFAVRATFGLPPGLGSARPTVKPAATPASKGSSGGGSSSSSSSSSSE
SEEDGGGGKMKKSTGVEGSPRNAGGGNGAAVSAPPPPRRDRGRPRKEPRL
IPPQTTQVPLQDKGAEPPKKRHQRQPEGGAAAQPRKGSAGQRSARSGDRA
SGRGDRGSSGGNRAARGGRGSGGGRGRGGGRGRGGGRRGQQGGERERPAS
AAAPSRGRKRPSEDTSGPNAAGAVGSGKRATSAKAHSTTVKAKPQAKPKA
KAKARKTGSVAPAAPATPAVAKHKAKSQKGTGASFFVAGDNARSAATPPH
RRRATTGRGGGPAAPSAAAAPAAPAPSSVAGSASSAVKAASALAAAPTAV
AAAAAAAGPPHSSSVSENAVAAAVGDPQTRSAIQQAGAGPRAGARGEVAG
VRVGLEARKATGGVAKSSAGIDRPSSSSPAAAAAAAAPTASATSNTSHVA
PPAAPASSADSIRGRGGGGVFQEMGETSSDSGDDDNDDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019188SNAPc_SNAP43