prot_L-elsbetiae_contig1095.855.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1095.855.1
Unique Nameprot_L-elsbetiae_contig1095.855.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length493
Homology
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: D8LB95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB95_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 6.790e-98
Identity = 181/218 (83.03%), Postives = 188/218 (86.24%), Query Frame = 0
Query:  232 DASLREVPDPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMFSGQALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSIEARDGESLAVNM---GNFNSNXXXXXXXXXXXXXXXXGGTSGLDLARAINAARG---LDGNGGGNPLQETPSPYAHLIMEDHAKLLGLATCYLQNYGIPGGEGAILNINQREEMAERQRQAIAAAVALNG 443
            D S R+ P+PSKVLHVRNVGYPVVQ DLVALLSCFGQVEK+KMFSGQALVQLPSVSVAKATMRHYEED EPKIG KRVYLNYSRSRSIE RDGESLAV     G     XXXXXXXXXXXXX   GG +GLDLARAINAARG   +DG   GNP+QETPSPYAHLIMEDHAKLLGLATCYLQ YGIPGGEGAILNINQREEMAERQRQA+AAA AL G
Sbjct:  217 DGSPRQTPEPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESLAVGATAGGGXXXXXXXXXXXXXXXXXNVNGGNNGLDLARAINAARGVGGMDGGSTGNPMQETPSPYAHLIMEDHAKLLGLATCYLQTYGIPGGEGAILNINQREEMAERQRQAMAAAFALTG 434          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: A0A1R3L5K1_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A1R3L5K1_ASPOF)

HSP 1 Score: 65.5 bits (158), Expect = 9.860e-8
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 0
Query:  240 DPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMF--SGQALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSIEARDGES 326
            +PSKV+HVRNVG+ + ++DL+ LL  FG V K+ M     QAL+Q+  VS A A M++Y  + +P +  + VY+ +S  + +   D  S
Sbjct:    3 EPSKVIHVRNVGHEIAESDLLQLLQPFGTVTKVVMLRAKNQALLQMYDVSSAAAAMQYYA-NVQPSVRGRNVYMQFSSHQELTTMDQNS 90          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: A0A444XTH1_ARAHY (RRM domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XTH1_ARAHY)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-7
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 0
Query:  232 DASLREVPDPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMF--SGQALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSIEARD 323
            D+ L+ + +PSKV+HVRNVG+ + + DL+ L   FG + K+ M     QALVQ+  V+ A  +++ Y  + +P I  + VY+ +S  + + + D
Sbjct:   33 DSDLQTMAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVASAVNSLQFYA-NVQPSIRGRNVYVQFSSHQELTSMD 125          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: UPI0009F1F3A1 (polypyrimidine tract-binding protein homolog 3 isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F1F3A1)

HSP 1 Score: 61.2 bits (147), Expect = 3.820e-7
Identity = 33/95 (34.74%), Postives = 55/95 (57.89%), Query Frame = 0
Query:  240 DPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMF--SGQALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSIEARDGESLAVNMG 332
            +PSKV+H+RNVG+ + + DL+ L+  FG V K+ +     QAL+Q+  VS A   +++YE   +P I  + +Y+ +S  + +   D  SL    G
Sbjct:   13 EPSKVIHIRNVGHEINENDLLQLVQPFGVVMKLVILRAKNQALIQMHDVSTAANVLQYYE-TVQPSIRGRNIYMQFSSHQELTTTDPNSLGTKGG 106          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: A0A446K2N1_TRITD (RRM domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446K2N1_TRITD)

HSP 1 Score: 60.5 bits (145), Expect = 3.950e-7
Identity = 29/82 (35.37%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  240 DPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMFSG--QALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSI 319
            +PSKV+H+RNVG+ + +ADL+ LL  FG + K+ M  G  QAL+Q+  +  + + +++Y    +P I  + VY+ +S  + +
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSISKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSIRGRHVYMQFSSHQEL 83          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: A0A452Z727_AEGTS (RRM domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452Z727_AEGTS)

HSP 1 Score: 60.5 bits (145), Expect = 4.750e-7
Identity = 29/82 (35.37%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  240 DPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMFSG--QALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSI 319
            +PSKV+H+RNVG+ + +ADL+ LL  FG V K+ M  G  QAL+Q+  +  + + +++Y    +P +  + VY+ +S  + +
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSVRGRHVYMQFSSHQEL 83          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: A0A452Z725_AEGTS (RRM domain-containing protein n=8 Tax=Triticinae TaxID=1648030 RepID=A0A452Z725_AEGTS)

HSP 1 Score: 61.6 bits (148), Expect = 7.490e-7
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0
Query:  223 PRRRAGERADASLREVPDPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMFSG--QALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSI 319
            P RR G  A+        PSKV+H+RNVG+ + +ADL+ LL  FG V K+ M  G  QAL+Q+  +  + + +++Y    +P +  + VY+ +S  + +
Sbjct:   42 PTRRGGRMAE--------PSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSVRGRHVYMQFSSHQEL 131          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: A0A446K2Q3_TRITD (RRM domain-containing protein n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446K2Q3_TRITD)

HSP 1 Score: 60.5 bits (145), Expect = 1.310e-6
Identity = 29/82 (35.37%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  240 DPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMFSG--QALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSI 319
            +PSKV+H+RNVG+ + +ADL+ LL  FG + K+ M  G  QAL+Q+  +  + + +++Y    +P I  + VY+ +S  + +
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSISKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSIRGRHVYMQFSSHQEL 83          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: UPI00092E3B18 (polypyrimidine tract-binding protein homolog 3-like n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E3B18)

HSP 1 Score: 60.5 bits (145), Expect = 1.430e-6
Identity = 30/86 (34.88%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  240 DPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMF--SGQALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSIEARD 323
            +PSKV+H+RNVG  + +ADL+ L   FG + K+ M     QAL+Q+  ++ A + ++ YE + +P I  + VY+ +S  + +   D
Sbjct:    3 EPSKVIHIRNVGQEISEADLLQLFQSFGVITKLVMLRAKNQALIQMQDIATAVSALQFYE-NIQPNIRGRNVYIQFSSHQDLAPTD 87          
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Match: M7Z2F0_TRIUA (Polypyrimidine tract-binding protein-like protein 3 n=3 Tax=Triticum TaxID=4564 RepID=M7Z2F0_TRIUA)

HSP 1 Score: 60.5 bits (145), Expect = 2.410e-6
Identity = 29/82 (35.37%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  240 DPSKVLHVRNVGYPVVQADLVALLSCFGQVEKIKMFSG--QALVQLPSVSVAKATMRHYEEDEEPKIGSKRVYLNYSRSRSI 319
            +PSKV+H+RNVG+ + +ADL+ LL  FG V K+ M  G  QAL+Q+  +  + + +++Y    +P +  + VY+ +S  + +
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSVRGRHVYMQFSSHQEL 83          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1095.855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB95_ECTSI6.790e-9883.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1R3L5K1_ASPOF9.860e-839.33Uncharacterized protein n=3 Tax=Asparagus officina... [more]
A0A444XTH1_ARAHY1.020e-735.11RRM domain-containing protein n=1 Tax=Arachis hypo... [more]
UPI0009F1F3A13.820e-734.74polypyrimidine tract-binding protein homolog 3 iso... [more]
A0A446K2N1_TRITD3.950e-735.37RRM domain-containing protein n=1 Tax=Triticum tur... [more]
A0A452Z727_AEGTS4.750e-735.37RRM domain-containing protein n=2 Tax=Aegilops tau... [more]
A0A452Z725_AEGTS7.490e-734.34RRM domain-containing protein n=8 Tax=Triticinae T... [more]
A0A446K2Q3_TRITD1.310e-635.37RRM domain-containing protein n=3 Tax=Triticum tur... [more]
UPI00092E3B181.430e-634.88polypyrimidine tract-binding protein homolog 3-lik... [more]
M7Z2F0_TRIUA2.410e-635.37Polypyrimidine tract-binding protein-like protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 244..312
e-value: 0.0079
score: 25.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 243..316
score: 9.132
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 229..334
e-value: 6.7E-14
score: 53.8
NoneNo IPR availablePANTHERPTHR23189:SF88coord: 233..322
NoneNo IPR availablePANTHERPTHR23189RNA RECOGNITION MOTIF-CONTAININGcoord: 233..322
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 234..320

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1095contigL-elsbetiae_contig1095:10314..16757 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1095.855.1mRNA_L-elsbetiae_contig1095.855.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1095 10314..16757 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1095.855.1 ID=prot_L-elsbetiae_contig1095.855.1|Name=mRNA_L-elsbetiae_contig1095.855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=493bp
ALRAAFVQHHLPAASASEQDTPEESAHASFSTMDTAAAVDGDAIATTTEG
SSALAPSFEGGGGGSTTPPPGVVLGINLLAINPGSPSPSLGAHPRGGASG
SESVMSGASRRRGGDESASEEGLCDERRSIGRRRSRDRSNSDSSSGTSGR
STRQRRAGGGRSSSRRSDHRDSRSRDGVGGGGRHRRNHSGGGSTGSLSPR
WEQGGGGGGGGGGGGAGNGHGSPRRRAGERADASLREVPDPSKVLHVRNV
GYPVVQADLVALLSCFGQVEKIKMFSGQALVQLPSVSVAKATMRHYEEDE
EPKIGSKRVYLNYSRSRSIEARDGESLAVNMGNFNSNNSGSSNGGGGGGG
NSNGGTSGLDLARAINAARGLDGNGGGNPLQETPSPYAHLIMEDHAKLLG
LATCYLQNYGIPGGEGAILNINQREEMAERQRQAIAAAVALNGISGHGHH
GGMGGWSGNAAAVAATAAAAEVSRHSRGMPGGGGGVFSGGGYG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf