prot_L-elsbetiae_contig1093.842.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1093.842.1
Unique Nameprot_L-elsbetiae_contig1093.842.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length425
Homology
BLAST of mRNA_L-elsbetiae_contig1093.842.1 vs. uniprot
Match: D7FGT8_ECTSI (SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT8_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 8.250e-79
Identity = 195/457 (42.67%), Postives = 268/457 (58.64%), Query Frame = 0
Query:    1 MVFGTGCKPGVDWSLCEEESGYTRILPVVFIMSAALYGATAILYADSMVRILRTQLREKKRMSYNTVVQMHTGVVVFSFAAFIHGVNMKRVATSRAVLDYLRRVKYTVIGSSLLWCYRSLCFGLKAYFGSPLSASMWLFCHSGIVLTGVAAASLYYVVIGSKIAVKAAKSV--EAASPPVEGVAQVQRKFRALAVLVSSGANQFMEGVSTITSIGETSARVHMNENSDEPAMSYRRI--GRRWSASRRGVDTGALAGQNVSVRASGSGPAPG---SGVGEPRK-----PRVAKSPMPNRSDEEVSSAKPTTRKARDTMVNVGGV----------NEQGRGEEKSQGEAQWKSSVLPMTSQTPF---------------RRSLTSDTTTEADATSGEEDTRDKQHLRDRAPRKRSSWSRAHHLSSDDSATSSGDSSRDEEESWKIEELNDHSLRSSSH 420
            M FG  C+P VDWS C + +GY  +L V +   A+LYGAT +LYA SM R ++ QLREKK++S+N+ +QMH G++ FS A FI GV+MK VA SR VLDYLRRVKY VIGSS+LWC R++ F + A    PL   +W+    G  +TG+A A LYYVVIGS +A +AAK+   E +  P +GV QVQ+KF+ALA +VS+GANQ +E  +TI SIGETSARV+++ +S+EP + ++RI  G RWS   R VD+GA +  +VS + +  G A     SG G+  K         K PM +    +V   +  T   R    + GG           N  GRG ++  G   W + V P+T+ TP                +  LT     + DA SG+E + + Q  R    +KRSSW RAH  SS+D+A SS +S +  E+ W++EEL   S   SS+
Sbjct: 1086 MPFGDHCEPDVDWSPCADSTGYPAVLTVYYPCYASLYGATGLLYATSMGRTMQNQLREKKKLSFNSAMQMHVGIITFSLAGFIRGVDMKLVARSRPVLDYLRRVKYVVIGSSVLWCLRTVLFVISACMDKPLPVLVWVVLRGGTAVTGIATALLYYVVIGSNVAARAAKAAASEGSRRP-DGVGQVQKKFQALAKIVSNGANQLIE--TTIASIGETSARVYVDGDSEEPKL-FQRIASGTRWSTRGR-VDSGASSRGSVSRKVTEGGGATAQLRSGTGDSLKVPDELSSETKQPMADTRGAQVGMREGFTFDLRSADNSDGGGDGKSRHPSVRNLGGRGGKERGGGGMWHTPVSPVTTPTPSPPGGFNDGGEVPEERKNELTE--CEDTDANSGDEGSGEDQQRRKPGLQKRSSWCRAHLPSSEDTAGSSDESRKKTEQVWELEELEAGSFSHSSY 1535          
BLAST of mRNA_L-elsbetiae_contig1093.842.1 vs. uniprot
Match: A0A6H5KV19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV19_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.140e-69
Identity = 185/501 (36.93%), Postives = 255/501 (50.90%), Query Frame = 0
Query:    1 MVFGTGCKPGVDWSLCEEESGYTRILPVVFIMSAALYGATAILYADSMVRILRTQLREKKRMSYNTVVQMHTGVVVFSFAAFIHGV-----------------------------------NMKRVATSRAVLDYLRRVKYTVIGSSLLWCYRSLCFGLKAYFGSPLSASMWLFCHSGIVLTGVAAASLYYVVIGSKIAVKAAKSVEAASPPVEGVAQVQRKFRALAVLVSSGANQFMEGVSTITSIGETSARVHMNENSDEPAMSYRRI--GRRWSASRRGVDTGALAGQNVSVRASGSGPAPG---SGVGEPRK-----PRVAKSPMPNRSDEEVSSAKPTTRKARDTMVNVGGV-------NEQGRGEEKSQ----------------GEAQWKSSVLPMTSQTPF--------------RRSLTSDTTTEADATSGEEDTRDKQHLRDRAPRKRSSWSRAHHLSSDDSATSSGDSSRDEEESWKIEELNDHSLRSSS 419
            M FG  C+P VDWS C + +GY  +LPV ++  A+LYG+T +LYA SM R ++ QLREK+++S+N+ +QMH G++ FS A  I GV                                   +MK VA SR VLDYLRRVKY VIGSS+LWC R++ F   A    PL   +W     G   TG+A A LYYVVIG+                     QVQ+KF+ALA +VS+GA+QF++  + I S+GE SARV+++ +S+EP + ++RI  G RWS  RR VD+G  +  + S +A+  G A     SG G+  K         K PM +    +V  A P   + R   +  G         +  G G+ KS+                GE  W + V P T+ TP               R+S  +D   + DA SG+E   + Q  R    +KRSSWSRAH  SSD SA SS +S +  EE W++EEL + S  +SS
Sbjct:    1 MSFGDHCEPDVDWSPCADSTGYPAVLPVYYLCYASLYGSTGLLYATSMGRTVQNQLREKRKLSFNSAIQMHVGIIAFSIAGLIRGVPLKASRKARTSINDTIEVPRLRHKSTLFYPVAALQDMKLVARSRPVLDYLRRVKYVVIGSSVLWCLRTVLFVTSACMDKPLPVLVWAVLRGGTAATGIATALLYYVVIGA--------------------CQVQKKFQALATIVSNGASQFIK--TPIASMGEASARVYVDGDSEEPKL-FQRIASGMRWSTRRR-VDSGTSSRGSFSKKAAEGGGATAPLRSGTGDSMKVPDELSSETKQPMADTRGAQVGPADPAMSQGRVVGMRDGFTFDVRSADDSDGEGDGKSKYPSVKDLGGCGGKERGGEETWHTPVSPATTPTPSPPEGFTDGSEVPEERKSELTDCE-DGDANSGDEGWGEDQQRRKPGLQKRSSWSRAHLTSSDASAGSSSESRKKTEEFWELEELEEGSFYNSS 476          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1093.842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGT8_ECTSI8.250e-7942.67SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1... [more]
A0A6H5KV19_9PHAE1.140e-6936.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..65
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 87..105
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 159..425
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..45
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 125..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..158
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..86
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..124
NoneNo IPR availableTMHMMTMhelixcoord: 137..159
NoneNo IPR availableTMHMMTMhelixcoord: 64..86
NoneNo IPR availableTMHMMTMhelixcoord: 22..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1093contigL-elsbetiae_contig1093:8421..15025 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1093.842.1mRNA_L-elsbetiae_contig1093.842.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1093 8421..15025 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1093.842.1 ID=prot_L-elsbetiae_contig1093.842.1|Name=mRNA_L-elsbetiae_contig1093.842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=425bp
MVFGTGCKPGVDWSLCEEESGYTRILPVVFIMSAALYGATAILYADSMVR
ILRTQLREKKRMSYNTVVQMHTGVVVFSFAAFIHGVNMKRVATSRAVLDY
LRRVKYTVIGSSLLWCYRSLCFGLKAYFGSPLSASMWLFCHSGIVLTGVA
AASLYYVVIGSKIAVKAAKSVEAASPPVEGVAQVQRKFRALAVLVSSGAN
QFMEGVSTITSIGETSARVHMNENSDEPAMSYRRIGRRWSASRRGVDTGA
LAGQNVSVRASGSGPAPGSGVGEPRKPRVAKSPMPNRSDEEVSSAKPTTR
KARDTMVNVGGVNEQGRGEEKSQGEAQWKSSVLPMTSQTPFRRSLTSDTT
TEADATSGEEDTRDKQHLRDRAPRKRSSWSRAHHLSSDDSATSSGDSSRD
EEESWKIEELNDHSLRSSSHDDSGD
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