prot_L-elsbetiae_contig1083.773.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1083.773.1
Unique Nameprot_L-elsbetiae_contig1083.773.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length396
Homology
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BLAST of mRNA_L-elsbetiae_contig1083.773.1 vs. uniprot
Match: A0A6H5KB96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB96_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.750e-38
Identity = 131/297 (44.11%), Postives = 146/297 (49.16%), Query Frame = 0 
Query:  119 RPAPARERSVSFQQEVQVFLVTHKSELDTSAKQALWWTGRDAAINKRAWLNHLGQPGCGRQSAGRPXXXXXXXXXXXXCSPHFLGAGXXXXXXXXXXXXXXXXGRGAQGF----------GEETAATGAAE----LLPADGVGILGCRCDACLTEGDEHELTYEQQEQVRXXXXXXXXXXXXXLPPRYDMPPPPYNNQLXXXXXXXXXRYSEAYQRPAAIPPPATAAASRDPWARVAAREPSKSWPSPEDWDREDDLGGKGSRSYSPGSASGTSPLYEACETYGDE------GSYFF 395
            RP   R + VSFQQEV+VFLVTH SELD  AKQALWWTGRDAA+NKRAWL+HLGQPGCGR+S G+              S HFLG G                   A G            E + A  AAE     LPA  VGILGCRC ACLTEG EHE  +EQQ    XXXXX         PP     P PY+++ XXXXXXXXX                                               DLG KGS+SYSP S  G+SPL EACE+Y D+      GSYFF
Sbjct:  105 RPRAPRIKGVSFQQEVEVFLVTHNSELDLRAKQALWWTGRDAAMNKRAWLHHLGQPGCGRESVGQQPRPYQPKRHRSSPS-HFLGGGRHTAADRGLGGRPWPSHSSAGGLLSADTADTAGAEASGAVAAAEEQSLFLPA-AVGILGCRCQACLTEG-EHEHEHEQQPXXXXXXXXTYE------PP--SQAPQPYDHRPXXXXXXXXXXXXXXXXX-------------------XXXXXXXXXXXXXXXXXXXXDLGMKGSKSYSPASVQGSSPLLEACESYDDDEGVFPTGSYFF 371
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1083.773.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB96_9PHAE5.750e-3844.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..395
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.632

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1083contigL-elsbetiae_contig1083:10245..14568 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1083.773.1mRNA_L-elsbetiae_contig1083.773.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1083 10020..17375 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1083.773.1 ID=prot_L-elsbetiae_contig1083.773.1|Name=mRNA_L-elsbetiae_contig1083.773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=396bp
MWQNFLSLLGLRCVSVLFSSYTPQNAATLQPRPSQQDPPPSKPPLSARNM
LTRKQQWRRTRVRHPRDGCVASGKADLEGHHHLHERADSDQTALSSYSSF
DSLRDGDDDSCCSTVPLVRPAPARERSVSFQQEVQVFLVTHKSELDTSAK
QALWWTGRDAAINKRAWLNHLGQPGCGRQSAGRPRPKHQHQQQQQDCSPH
FLGAGGGALSAHNSNNNGSGFGRGAQGFGEETAATGAAELLPADGVGILG
CRCDACLTEGDEHELTYEQQEQVRRRRWRQQEREEERLPPRYDMPPPPYN
NQLPPPYNHQPPRYSEAYQRPAAIPPPATAAASRDPWARVAAREPSKSWP
SPEDWDREDDLGGKGSRSYSPGSASGTSPLYEACETYGDEGSYFF*
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