prot_L-elsbetiae_contig10476.466.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10476.466.1
Unique Nameprot_L-elsbetiae_contig10476.466.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length222
Homology
BLAST of mRNA_L-elsbetiae_contig10476.466.1 vs. uniprot
Match: D7FJ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ42_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 1.850e-63
Identity = 206/221 (93.21%), Postives = 209/221 (94.57%), Query Frame = 0
Query:    1 MCPVTLQEMNGSHAFVVLMSTGWVMAEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEEREVLTRQLIAKREEARLAKKLQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGASAGPNSAKLAGAAAEAVKKNKEGSKVYASLFGKKDVSNEHLFIATAGHRYNLG 221
            MCPVTLQEMNGSHAFVVLMSTGWVM+EKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERE  TRQLI KRE+ARLAKK        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGASAGPNSA+LAGAAAEAVKKNKE SKVYASLFGKKDVSNEHLFIATAGHRYNLG
Sbjct:  120 MCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLITKREKARLAKKXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGASAGPNSARLAGAAAEAVKKNKEASKVYASLFGKKDVSNEHLFIATAGHRYNLG 334          
BLAST of mRNA_L-elsbetiae_contig10476.466.1 vs. uniprot
Match: A0A7S3H2A3_9STRA (Replication termination factor 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2A3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.070e-14
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 0
Query:    2 CPVTLQEMNGSHAFVVLMSTGWVMAEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEEREVLTRQLIAKR 71
            CP+T  E NG+H FV + STG+V++EKA KE+GI  LQ EYGPF  +D+V L PT  E E  T Q++ +R
Sbjct:  139 CPITKMEFNGNHPFVAIWSTGYVLSEKAIKELGIEALQSEYGPFQAEDLVKLIPTQFELEAQTAQMVQRR 208          
BLAST of mRNA_L-elsbetiae_contig10476.466.1 vs. uniprot
Match: A0A836CNB3_9STRA (Rtf2 RING-finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.410e-14
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 0
Query:    1 MCPVTLQEMNGSHAFVVLMSTGWVMAEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEEREVLTRQLIAKR 71
            MCP+T QE  G + F ++ STGWV++++A  EVGI GLQ EYGPF +DD++ LAP  +E++ L +++  +R
Sbjct:  113 MCPITFQEFTGRYPFSIIRSTGWVISDRAIAEVGIEGLQAEYGPFVQDDVMRLAPDKDEQQQLRQRMETRR 183          
BLAST of mRNA_L-elsbetiae_contig10476.466.1 vs. uniprot
Match: W7TG44_9STRA (Replication termination factor 2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG44_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.460e-13
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    2 CPVTLQEMNGSHAFVVLMSTGWVMAEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEE 59
            CPV   EMN    FVV+ STGWV++E+A KEVG A LQ+EYGPF  DD++ L P +EE
Sbjct:  145 CPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEE 202          
BLAST of mRNA_L-elsbetiae_contig10476.466.1 vs. uniprot
Match: A0A7S2RH24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH24_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.580e-13
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    2 CPVTLQEMNGSHAFVVLMSTGW---VMAEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEEREVLTRQLIAKREEARL 76
            CPV   EMNG H FVVL  T     V++E+A K+VG   LQEEYGPFT DD++ + P++EER  L  ++ A+REE R+
Sbjct:  139 CPVASVEMNGRHPFVVLRGTTKPVNVLSERAIKQVGTDALQEEYGPFTGDDVIKVVPSEEERPQLVARMAARREEERI 216          
BLAST of mRNA_L-elsbetiae_contig10476.466.1 vs. uniprot
Match: A0A6V1S5E2_HETAK (Replication termination factor 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5E2_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 5.210e-11
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 0
Query:    2 CPVTLQEMNGSHAFVVLMSTGWVMAEKATKEVGIAGLQEEYGPFTE-DDIVGLAPTDEE 59
            CPVTL EMNGS  FVV+  TGWV++++A +EVG   LQ EYGPF   +D+V LAP +E+
Sbjct:  120 CPVTLIEMNGSQPFVVVWPTGWVLSDRALREVGAPALQAEYGPFRPGEDVVRLAPPEED 178          
BLAST of mRNA_L-elsbetiae_contig10476.466.1 vs. uniprot
Match: A0A8J2SMQ9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMQ9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.940e-9
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    2 CPVTLQEMNGSHAFVVLMSTGWVMAEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEEREVLTRQLIAKREEAR 75
            CP+T    +GS  F+V+ +TGW++A+KA  E+G   LQ+EYGPFT+ D+V  AP  ++    +R L  KR  A+
Sbjct:  157 CPLTGASFDGSEPFLVVRTTGWLIAQKAISELGEQALQDEYGPFTKSDLVTAAPDPDDVREASRALAEKRAAAK 230          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10476.466.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FJ42_ECTSI1.850e-6393.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3H2A3_9STRA5.070e-1452.86Replication termination factor 2 n=1 Tax=Spumella ... [more]
A0A836CNB3_9STRA7.410e-1447.89Rtf2 RING-finger-domain-containing protein n=1 Tax... [more]
W7TG44_9STRA6.460e-1358.62Replication termination factor 2 n=3 Tax=Monodopsi... [more]
A0A7S2RH24_9STRA8.580e-1351.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1S5E2_HETAK5.210e-1157.63Replication termination factor 2 n=1 Tax=Heterosig... [more]
A0A8J2SMQ9_9STRA3.940e-943.24Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027799Replication termination factor 2, RING-fingerPFAMPF04641Rtf2coord: 1..126
e-value: 3.1E-19
score: 69.4
IPR006735Replication termination factor 2PANTHERPTHR12775PROTEIN C20ORF43 HOMOLOGcoord: 1..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10476contigL-elsbetiae_contig10476:920..2264 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10476.466.1mRNA_L-elsbetiae_contig10476.466.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10476 236..4370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10476.466.1 ID=prot_L-elsbetiae_contig10476.466.1|Name=mRNA_L-elsbetiae_contig10476.466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
MCPVTLQEMNGSHAFVVLMSTGWVMAEKATKEVGIAGLQEEYGPFTEDDI
VGLAPTDEEREVLTRQLIAKREEARLAKKLQKSSKKSARREKSAAATAAT
ASSAAASSPSNAKSSSVAVAADDARQPSAAEAAAEEDGTGAERKKSKRRK
RAAEKDAAVAAAVAANGASAGPNSAKLAGAAAEAVKKNKEGSKVYASLFG
KKDVSNEHLFIATAGHRYNLG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027799Rtf2_RING-finger
IPR006735Rtf2