prot_L-elsbetiae_contig1003.78.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1003.78.1
Unique Nameprot_L-elsbetiae_contig1003.78.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length564
Homology
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BLAST of mRNA_L-elsbetiae_contig1003.78.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.400e-8
Identity = 36/74 (48.65%), Postives = 44/74 (59.46%), Query Frame = 0 
Query:   33 VNATDGIISGVESAIHGEARLHGNFATASRAYRDPSIGNIVDVVTGHGMDVLAAVGASSGFEGMCGEEALSNMS 106
            V+A DG+IS V S  HGE RLHGN A       +PS+GN V+VV GHGMDVL  +   SG     G +A +  S
Sbjct:  134 VSAADGVISSVGSMFHGERRLHGNAAAWGEVIENPSVGNAVEVVIGHGMDVLGGICVGSGLGDAVGGDAAAASS 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1003.78.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5X1_9PHAE3.400e-848.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..563
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1003contigL-elsbetiae_contig1003:18200..20803 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1003.78.1mRNA_L-elsbetiae_contig1003.78.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1003 17954..21519 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1003.78.1 ID=prot_L-elsbetiae_contig1003.78.1|Name=mRNA_L-elsbetiae_contig1003.78.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=564bp
MSCSRCTAALGGATAGLDVGGPLGAFAGAVGAVNATDGIISGVESAIHGE
ARLHGNFATASRAYRDPSIGNIVDVVTGHGMDVLAAVGASSGFEGMCGEE
ALSNMSGDVSGGGDSSGLNTGGLDGAEGTGATGVGTGLDDPSSPVDVSEG
ADVPEETVEDVNGDEQTVGDGDAPEETVEDKDGAEETVEDGDAPEGVCEV
DGDEQTMGDRDVPEETVEDGDAPEGVCEVDGDGQTIGDKDVPEETVEDGD
APEGICAVDGDEQTIGDGDVPEETVEDGDAPEGVCEVDGDEKTVGGGDVP
EETVEDGDGAEETVEDGDAPEGVCEVDGDEQTVGDGDGAEQIVEGGDAPE
GVCEVGGDEQTVEDGDGAEETVEDGDAPEGVCEVDGDEQSIEDGDVPEET
VEDGDGAEQIIEGGDAPEGVCEVDGAEQTVDNRDALQGVCEVDGDGQTVE
NGDASEGVHDVKNSWEDAPFIGDEVKLARDLIDLWARRGDGGDIVKQLQE
IIPEALKVSRGGAARGSAFESYGRSTRRSNDFSALTFAARPRVRFLNSVV
VILKTPQQKAKKC*
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