mRNA_L-elsbetiae_contig999.18912.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig999.18912.1
Unique NamemRNA_L-elsbetiae_contig999.18912.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig999.18912.1 vs. uniprot
Match: A0A6H5L2H1_9PHAE (Acylphosphatase-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2H1_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.990e-32
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 KATGGYFRAHARNEAHFNRKLCGALKELGKGQTEIIVEGKTSAIRSFLRWCKKGPG 168
            ++TGGYFRAHARNEAHFNRKLCGALKELG+GQTEIIVEGKTSAIRSFLRWCK+GPG
Sbjct:  103 QSTGGYFRAHARNEAHFNRKLCGALKELGQGQTEIIVEGKTSAIRSFLRWCKRGPG 158
[Close]
BLAST of mRNA_L-elsbetiae_contig999.18912.1 vs. uniprot
Match: A0A835YRR3_9STRA (Acylphosphatase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.820e-19
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 KATGGYFRAHARNEAHFNRKLCGALKELGKGQTEIIVEGKTSAIRSFLRWCKKGPG 168
            +A GGYFRAHARNEAH+ R+L GAL+E    +TEIIVEGK SAI SF+RWC+KGPG
Sbjct:   70 QAYGGYFRAHARNEAHYMRRLSGALQEY-PDRTEIIVEGKRSAIDSFVRWCRKGPG 124
[Close]
BLAST of mRNA_L-elsbetiae_contig999.18912.1 vs. uniprot
Match: A0A6V2T9H1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T9H1_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 5.360e-12
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 KATGGYFRAHARNEAHFNRKLCGALKELGKGQTEIIVEGKTSAIRSFLRWCKKGPG 168
            +  GG++RA A+ EA F+R+L G +++L  G  EI+VEG    + SF+ WCK+GPG
Sbjct:  117 QVQGGFYRAMAKKEASFHRRLVGGIRDLRCGSVEIVVEGPRKKLESFIGWCKRGPG 172
[Close]
BLAST of mRNA_L-elsbetiae_contig999.18912.1 vs. uniprot
Match: A0A8J6CEB8_DIALT (Acylphosphatase-like domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CEB8_DIALT)

HSP 1 Score: 48.9 bits (115), Expect = 3.260e-5
Identity = 21/50 (42.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   16 YFRAHARNEAHFNRKLCGALKELGKGQTEIIVEGKTSAIRSFLRWCKKGP 165
            Y   H + EA +NRKL      +   Q E++VEG    ++SF+RWCK+GP
Sbjct:  172 YTLRHTKIEAGYNRKLTYEGNWIDDQQLELMVEGPARQLKSFVRWCKRGP 221
[Close]
BLAST of mRNA_L-elsbetiae_contig999.18912.1 vs. uniprot
Match: A0A7S0JHD0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JHD0_9EUKA)

HSP 1 Score: 48.1 bits (113), Expect = 5.530e-5
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   16 YFRAHARNEAHFNRKLCGALKELGKGQTEIIVEGKTSAIRSFLRWCKKGP 165
            Y+  H + EA FNR L  +    G+ + E+ V G  S ++SF+RWC++GP
Sbjct:  161 YYTRHLQVEAVFNRGLKLSSNRPGERKLEVTVTGSASRLKSFVRWCQRGP 210
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig999.18912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L2H1_9PHAE7.990e-3292.86Acylphosphatase-like domain-containing protein n=2... [more]
A0A835YRR3_9STRA1.820e-1971.43Acylphosphatase-like domain-containing protein n=1... [more]
A0A6V2T9H1_HETAK5.360e-1246.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J6CEB8_DIALT3.260e-542.00Acylphosphatase-like domain-containing protein n=1... [more]
A0A7S0JHD0_9EUKA5.530e-540.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig999contigL-elsbetiae_contig999:28127..28300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue4.7e-24
Seed eggNOG ortholog2880.D8LR73
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Acylphosphatase
EggNOG OGs2C3YV@1,2SES2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAcylphosphatase-like domain
Ec32 orthologEc-06_004110.1
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817056.648343-CDS-L-elsbetiae_contig999:28126..283001622817056.648343-CDS-L-elsbetiae_contig999:28126..28300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig999 28127..28300 +
1691684014.214941-CDS-L-elsbetiae_contig999:28126..283001691684014.214941-CDS-L-elsbetiae_contig999:28126..28300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig999 28127..28300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig999.18912.1prot_L-elsbetiae_contig999.18912.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig999 28127..28300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig999.18912.1

>prot_L-elsbetiae_contig999.18912.1 ID=prot_L-elsbetiae_contig999.18912.1|Name=mRNA_L-elsbetiae_contig999.18912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
KATGGYFRAHARNEAHFNRKLCGALKELGKGQTEIIVEGKTSAIRSFLRW
CKKGPGG*
back to top

mRNA from alignment at L-elsbetiae_contig999:28127..28300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig999.18912.1 ID=mRNA_L-elsbetiae_contig999.18912.1|Name=mRNA_L-elsbetiae_contig999.18912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=174bp|location=Sequence derived from alignment at L-elsbetiae_contig999:28127..28300+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCGACCGGCGGGTACTTCCGAGCGCACGCCCGGAACGAGGCCCACTT
CAACCGCAAGCTGTGCGGGGCCCTGAAGGAGCTGGGGAAGGGGCAGACGG
AGATCATCGTCGAGGGGAAGACGAGCGCCATTCGCAGCTTCTTGCGGTGG
TGCAAGAAGGGCCCTGGTGGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig999:28127..28300+

>mRNA_L-elsbetiae_contig999.18912.1 ID=mRNA_L-elsbetiae_contig999.18912.1|Name=mRNA_L-elsbetiae_contig999.18912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig999:28127..28300+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCGACCGGCGGGTACTTCCGAGCGCACGCCCGGAACGAGGCCCACTT
CAACCGCAAGCTGTGCGGGGCCCTGAAGGAGCTGGGGAAGGGGCAGACGG
AGATCATCGTCGAGGGGAAGACGAGCGCCATTCGCAGCTTCTTGCGGTGG
TGCAAGAAGGGCCCTGGTGGGTGAAAGGCGACCGGCGGGTACTTCCGAGC
GCACGCCCGGAACGAGGCCCACTTCAACCGCAAGCTGTGCGGGGCCCTGA
AGGAGCTGGGGAAGGGGCAGACGGAGATCATCGTCGAGGGGAAGACGAGC
GCCATTCGCAGCTTCTTGCGGTGGTGCAAGAAGGGCCCTGGTGGGTGA
back to top