mRNA_L-elsbetiae_contig9631.18611.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9631.18611.1
Unique NamemRNA_L-elsbetiae_contig9631.18611.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9631.18611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9631contigL-elsbetiae_contig9631:1364..6561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size960
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9631.18611.1prot_L-elsbetiae_contig9631.18611.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9631 2144..2752 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.1547189-UTR-L-elsbetiae_contig9631:1363..17501622817029.1547189-UTR-L-elsbetiae_contig9631:1363..1750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9631 1364..1750 -
1691683994.0872622-UTR-L-elsbetiae_contig9631:1363..17501691683994.0872622-UTR-L-elsbetiae_contig9631:1363..1750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9631 1364..1750 -
1622817029.1668432-UTR-L-elsbetiae_contig9631:2134..21431622817029.1668432-UTR-L-elsbetiae_contig9631:2134..2143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9631 2135..2143 -
1691683994.0989046-UTR-L-elsbetiae_contig9631:2134..21431691683994.0989046-UTR-L-elsbetiae_contig9631:2134..2143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9631 2135..2143 -
1622817029.1976333-UTR-L-elsbetiae_contig9631:2752..27951622817029.1976333-UTR-L-elsbetiae_contig9631:2752..2795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9631 2753..2795 -
1691683994.13307-UTR-L-elsbetiae_contig9631:2752..27951691683994.13307-UTR-L-elsbetiae_contig9631:2752..2795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9631 2753..2795 -
1622817029.2085912-UTR-L-elsbetiae_contig9631:6382..65611622817029.2085912-UTR-L-elsbetiae_contig9631:6382..6561Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9631 6383..6561 -
1691683994.1422124-UTR-L-elsbetiae_contig9631:6382..65611691683994.1422124-UTR-L-elsbetiae_contig9631:6382..6561Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9631 6383..6561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.1781201-CDS-L-elsbetiae_contig9631:2143..22671622817029.1781201-CDS-L-elsbetiae_contig9631:2143..2267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9631 2144..2267 -
1691683994.1096654-CDS-L-elsbetiae_contig9631:2143..22671691683994.1096654-CDS-L-elsbetiae_contig9631:2143..2267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9631 2144..2267 -
1622817029.1876085-CDS-L-elsbetiae_contig9631:2534..27521622817029.1876085-CDS-L-elsbetiae_contig9631:2534..2752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9631 2535..2752 -
1691683994.1228752-CDS-L-elsbetiae_contig9631:2534..27521691683994.1228752-CDS-L-elsbetiae_contig9631:2534..2752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9631 2535..2752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9631.18611.1

>prot_L-elsbetiae_contig9631.18611.1 ID=prot_L-elsbetiae_contig9631.18611.1|Name=mRNA_L-elsbetiae_contig9631.18611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MPPRRAHAPAAPARGFTVVCNASGTCVKGNFKPSGGKTAHERLATKANMK
NPVIGASIKQGGAVSLRSETINMNKHGQCNMAGTQLGERTKRQIEAGKVL
SVKSHIRGQNNGR*
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mRNA from alignment at L-elsbetiae_contig9631:1364..6561-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9631.18611.1 ID=mRNA_L-elsbetiae_contig9631.18611.1|Name=mRNA_L-elsbetiae_contig9631.18611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5198bp|location=Sequence derived from alignment at L-elsbetiae_contig9631:1364..6561- (Laminarionema elsbetiae ELsaHSoW15)
GCTTCTGCCATTAGCTTTGTTTGTCTGTGTCACGAGAGCTCAAGAGGAGT
ACACGGAGACAAGGCGAACGAGAGGACAACACGGTTGACGCAGCGCGACG
ACTGCCTCGGCTGCTGCTAGTGTTGGAACTTTTTCAGCGGACAACACGAA
CCCTGGCGGCCAGGCAACAATCACGCTTGGTACGTGACTCCTTGTGGTAT
GGAAGTGAGCGAAGGACCATAGGCGACAGTTTAGACAGCAATAGACAAAA
GGTTGCCGAGAATCAGACGTACACGGATTGGAGTAGACGGGCGCTCGAAG
CGTGGCTGATGCTTGTCAGTTCCGGTCAGGGGCAGCATAACCTCATCCGA
TGCTCGATATCGCCGGCAATAGCATGTCTAATACCCCGTTTTACCGGACC
ATAACATCGACCCGTCACGGCAATCACACCTCACGTTGTACCGAGAAATG
CAGTACCGTTGACCTAAGATCCGGATAACATATCGGAACACGGCACAATA
AGGTAAAAATACAACGCGCATTAATCAACCATGTGCACGGTGATGACACG
TCATACATAACGGGCACCGTGTAAGCGTTGATAACAAACGGGGAGGGGAG
GCGTCCCGAGACGATCGCACACATCATACGTAATAGCGTTCAAGTACAAG
AAGAATTGAACCGCGATATTACACAAAACGCTGTGAACGAAGACCAATCA
ATACACGTTTGTTATAAAAACAAATCAAATATATATTGGAGTATGGGACA
CCGGTGTTACAAATGCGAATTCGCCACAAAAAGTACATTCAGTACACACG
AGAGGAGGTCCCCGGCGAATAAGCTAGGTATTGTACGAAGACAAAACCGT
GTACTCGTGTAACGTTCACAGAAACAATACGCCACCCAAAGAGCGACGCC
AGTGCAACGATAGCACATATGCCTGATGTTGAGTAAATCCGTGCAGAGTA
CGCTCAGTTGGATGAACGCAGTAGAAGAAAGTCGCGGAAAAGCTCGGTGT
GCGAGCAGATGTAAGAACTCCCCGGGTGTGAAAACCCGCCGATGCCAAAT
TGCTGTAGAGTGTGGAAACAAGGTGTAGTAACCCGGGCAGGCGTGGTAGC
CTGAGGTATGTGAACGGGCGTGGTAGCCCTCGGCGTGGTAGCCGTGAGTC
AGACGGAGCGTGGTAGCTCCTCGGCGTGGTAGCCGGAAACAAGGTAAATT
GACAGAGAGACACACAGCACTTACCTGCGGCGTAATAACGCTACTGAGGC
ATACCCAGAAAACAATAAACAAACACGAAACCCCCGAATCTCCGTTCCAT
CTCTACTACGAAACTCCGTTTGCAATCTGACAATGATGTGAGTACATCCA
ACAGCCCTCGCGCCAGAGGGGCGGGATCCGTATCAAATGCGCCTAGATTG
CCTGGATTATGAGGACGGAAAATATGTGGCTTCATCACGACCATACCTGT
CTTAGTAACAGAGACCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCGT
TTGATTAAGTATGGTCAGTCAGCGCCTAATCGTCCACAATTCCGATACTT
AGATACACTTTTCTCGGGAATGATGGGGTTGCTCCGAAGTTGAAAGACAC
CGGCAAACGCCCTGTCTCCGGGCGCATATATCTCCCTATTGAAAGCGATT
TTAACTTTTACATATTTAAAGGTATTTGTTTGTTTCCACACACACACACA
CACACACACACAATCACTAAATAAACATAACTAGGGGGAGCAACAGGGCC
CCCGCGCCTGCAGGCGGCGCGAGGGCCAGAATCAGAAGTCTGATTCGGAA
GTGAAGAGGTTGAGATGCTTCGGGGTACGAAACAATAGGCCAAGAACACA
TAGTTTGCACATTACACACACACATAGATAGATACATCTCCGACAATCTG
TAATGAGCCTTCAATTACTATTTTTGTTTTGTATGCTCTTGGTGTGCTCG
TAGTCGGGAGGGATCTATTTTTCCTTCCCCCCCCCCTCACAGCAATCAAA
ATGGCAAATTCAGCCGCCATTCCCACCTCGACGCGGCGCGGGATTCGTCT
CAGGCCCCTTCGGTATAATTTGGCCTCTCGTGTCCGTTTTCATACCGTGC
TGATATTACAAGCTGGATTGAGCTAGAAGCTCACATTCGTTCGTTCAGGC
CTAGCTTTGCCGTTTTTACGAGTTTAGGTTTGAAAGTTGGTGGCTGCTCC
TAAAACGTGCTTCAAAACTGTTCGTACATCTCACTACACAGAACTATCTC
GCTGAACAATCGCGTATTCTGTCCAATACGACGACCACCTCCTCCGCCGC
TCTTTGACTCGGCATTTATGTGCCACCACAAATCGCACAACGTACAATTC
TTCTGGGTGGACTTGCATGGATACGTAGTGGACGACGTTACTTCCGAATC
ACCTTCGACCCATACGACGAGCACTTGCGATGCTGAGCATGACGTCTGGA
GCATATCATACACTGCTGTATCATCACCGCTGTTCTCTCGGACTTCCGCG
ACCGCCGAATACCACAAAGTAGAAACGTATCAAAGTATAAATTTCCCTCT
ACTTTTTTTATATCGCACAACAACGTCTTGCGTGGATACGTCGCAAACTG
TGCGACTTAGCCATTGCATGGTCTCATCGTCATGCCGTCTGTTGGTCGTG
ATTATCTGTGCGAAACCTACTCCACAGACACTTCTATGTAGTAGACTATG
TGCGATGGTACCTGCATCTTACTTCTAGTCTAATTGTTTGCGGTTTGCCA
CGTACCTCCACATCGATGATACTATCGCACGACTGACTAACGACACCAGC
GCACACGTCTCTGCCACGAATAACGCAGGCTTTCTGTTCTTAAGTGAATA
TTTCATTACCCCTGTCTTAGCTCCTAGATAGTTATTGTTTGATTTTTCAA
GGTGCTTGGATACGAGTCCGATCGGTGTGTCCCCTCCGGGGGTTACTAGT
AGATGTTAGAAGGTCGAATGACCACTGGACTACCAGTCAGCGCTGACTGG
TAGTCCAGTGGTCATTCGAGCTTCTTAACAAAAGCTAATGCCCGCGTCCT
TCCAACTGTTAAGCCAAGAACTTGGAATTTCACCCCCAGGGTTGCCGTCC
CTGTGGTCAGCGCTGTCTTGCCCGGTACTTCCACTCCGGTACAAGAGGTT
TATCGGCTAGGCCAGTTTCCTTAGGCCTCTTTTCCAGTGTCTTTAGGAGG
AAAAATACTCGGGGAAAAATTCGAACCCTGACATTGGCTTTTGTTAAAAG
ATCGAATGACCACTGGACTACCTGTCAGCGGCTGACTACAGGGACGGCAA
CCCTGGGGGTGAAATTCCGAGTTCTTGGCTTAACTCAGGTAGAAAAATGC
GGGCATAAGCTTTTGTTAAGAAGCTAGAATGACCATTTTTATTGTTTTTT
GTTTTTTTAGGATACCGTATGAAGGGGAGGAACGAGTGGGCCATGACAGA
TGACTACGCCCGCTTCTGGGTTAACTTAGTTCCTATACTCAACACCCATA
CCTGCAAGACAATGCGGTGGCATCCTCGGTACACGAGCAGAAACTACGCA
GGGGATTCGAGCAACGGGTGAAAAACTCATATAGATAAACAAGTTGCGGC
TGGTTCTGGAAAGGGAAATGGATCCAGGAACAACGATTGATAAGCGGCGT
CTACGGCACCCCTCTCCTTCTTTCCTCACGCGATAGAAATGAGTGCTGCA
CCTTCGCGTTTTACTGAGTATTCTATCCAGTCTACACCTTCTTGCCCGAT
ATTTTGATGTCATCAGGTGATCGCCGAACTCGCTTCTAGAAGCACACGGA
CTTGGAAACATGCCCCCCCGTCGTGCTCATGCGCCGGCCGCCCCCGCCCG
AGGTTTTACCGTGGTCTGCAATGCATCCGGCACCTGTGTGAAGGGCAACT
TCAAGCCCTCCGGGGGTAAGACGGCGCATGAACGCCTGGCGACCAAAGCC
AACATGAAGAATCCCGTCATCGGGGCGTCAATAAAGCAAGGCGGGGCGGT
GTCTTTGAGATCCGAGACCATCAACATGTAGGTCTTTACCCTACCTTTGG
CGATAAGAATTGGGCCAGTCTGAGCGAAGAGCGCGCCTTTGCTGTGAAGC
CTGTGGCTCAATAGACCCGTTTATCTCCGGGAGGATATCAAACCTACTCG
GAAATAATTAGATATACCTGATAGTTGTCGAGACAACGAGCGAGAACATC
GTATCCGGAGCGCTTGATGCCTAGCTGCAGCCCTCCCCAGATAAGGGATG
TCCAAACTGCTTATTGTAACAACTACATTACGACGTCAAACCAGGAACAA
ACACGGCCAGTGTAATATGGCCGGCACCCAACTTGGGGAGAGGACCAAGC
GCCAAATCGAGGCAGGCAAGGTCTTGAGCGTCAAGTCCCACATTCGTGGC
CAAAACAACGGGCGCTAGAAAGTTCAGGTGGGAGGAATGTCAGAAATATG
CATTCCGAGCGTTTATATTTCTCACTTTGCGCAGATCGCCCGGGCAATTT
GGCGCTGTAGCATTCCCGGTGAATAATCTACAGCACGGTAGGTGAGATGA
GTGCCACAAGTCAGATGCAGTAAGACTCTGGCCAGAAACCTCGTGGTTGA
GAGAGATTTTCATACATACGACCGAGGTAAAAGGATAGTGTGTGCGATTG
GCATACCATATCGATCGCGCTGAAGAGCGCATTATTCTAAATGTAGACCA
TGTTGGAGTAGACTATTATCTTTCTAAAGCTGATTTAGTTTAGAAATGCT
CTGGAAAATTCTAGTCTAAAGGCCTGTATCGTGCGCACGTCATCTGCCGC
GTGCCTGGCAGATGACAAGATCATACGTCGCTGTGTTCCAGACGAGAGGG
AGGCAATCGGCTGAGGAGAATCTCCTCGGTGAAACATGGGCCGCAGAAGC
AAACAGGGTCGTAGTCCGGCTAAACATCGGCTCGTGATGAGAGTTTTTAG
TCCACCATGCAACGTTCTCAACGCGCAGTAAACTCTGTAACGAGACTTGT
CTGCTCGGATTTTCGATGCTTCCCTTTGTTTTGACTTTGGAGTTTTGCGG
TGTGCGAGTTTGGTGTGGAATGGGCAGCAGGCATCCCGTTGCCCGCAACC
TGTAGGCTTTGGGATTTTGATGTTGACGAGCCAAATGTAGGGCGTGTGTT
TTTCGCGAATTGATCGGACCACTCTTTTTGTGGATCACCTTGTTGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9631:1364..6561-

>mRNA_L-elsbetiae_contig9631.18611.1 ID=mRNA_L-elsbetiae_contig9631.18611.1|Name=mRNA_L-elsbetiae_contig9631.18611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig9631:1364..6561- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCCCGTCGTGCTCATGCGCCGGCCGCCCCCGCCCGAGGTTTTAC
CGTGGTCTGCAATGCATCCGGCACCTGTGTGAAGGGCAACTTCAAGCCCT
CCGGGGGTAAGACGGCGCATGAACGCCTGGCGACCAAAGCCAACATGAAG
AATCCCGTCATCGGGGCGTCAATAAAGCAAGGCGGGGCGGTGTCTTTGAG
ATCCGAGACCATCAACATATGCCCCCCCGTCGTGCTCATGCGCCGGCCGC
CCCCGCCCGAGGTTTTACCGTGGTCTGCAATGCATCCGGCACCTGTGTGA
AGGGCAACTTCAAGCCCTCCGGGGGTAAGACGGCGCATGAACGCCTGGCG
ACCAAAGCCAACATGAAGAATCCCGTCATCGGGGCGTCAATAAAGCAAGG
CGGGGCGGTGTCTTTGAGATCCGAGACCATCAACATGAACAAACACGGCC
AGTGTAATATGGCCGGCACCCAACTTGGGGAGAGGACCAAGCGCCAAATC
GAGGCAGGCAAGGTCTTGAGCGTCAAGTCCCACATTCGTGGCCAAAACAA
CGGGCGCTAGGAACAAACACGGCCAGTGTAATATGGCCGGCACCCAACTT
GGGGAGAGGACCAAGCGCCAAATCGAGGCAGGCAAGGTCTTGAGCGTCAA
GTCCCACATTCGTGGCCAAAACAACGGGCGCTAG
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