mRNA_L-elsbetiae_contig962.18596.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig962.18596.1
Unique NamemRNA_L-elsbetiae_contig962.18596.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig962.18596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig962contigL-elsbetiae_contig962:8513..9658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1147
Cds size1146
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817027.866033-CDS-L-elsbetiae_contig962:8512..96581622817027.866033-CDS-L-elsbetiae_contig962:8512..9658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig962 8513..9658 +
1691683993.1822016-CDS-L-elsbetiae_contig962:8512..96581691683993.1822016-CDS-L-elsbetiae_contig962:8512..9658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig962 8513..9658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig962.18596.1prot_L-elsbetiae_contig962.18596.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig962 8513..9658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig962.18596.1

>prot_L-elsbetiae_contig962.18596.1 ID=prot_L-elsbetiae_contig962.18596.1|Name=mRNA_L-elsbetiae_contig962.18596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=382bp
PPASNAIDTGTAPFLSMPPLAAKPLPLAAPTAEVLFGVDLPFAPAATLEP
SAPATDTTAVVGVISPPLGETPALLRGVFAVGLFEGAGAAGLAAGAGAGV
AARIRGTVGADRTGAAGITGTVAPTPKPVTAGLPPLPPGPSTLCQTLPPK
APTIMLPLGVADGACPSPLTTPRATLLKTPTPPFVLQSWPAAAPAATTAA
VAAVALAFAAVLSASAASAVSVALLALRLFFLDRFPGWEGAPTARPGATL
AATDASNLPLSLSSALPPANGPSSFERLTLWPAAASATSIAALIAIAFDL
AAVAFALAVVASAFAASAFAFAASATSAISFAIHRCFLDTDISFPRGALI
AWSPYSVALCPARHHRCIDLDFVVVSPPSSK*
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mRNA from alignment at L-elsbetiae_contig962:8513..9658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig962.18596.1 ID=mRNA_L-elsbetiae_contig962.18596.1|Name=mRNA_L-elsbetiae_contig962.18596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig962:8513..9658+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCGCTTCCAATGCTATCGACACCGGCACCGCTCCTTTCCTTTCGAT
GCCGCCCTTGGCGGCCAAACCATTGCCGCTTGCAGCACCTACGGCTGAAG
TGCTCTTTGGGGTAGATTTGCCCTTTGCCCCCGCTGCCACACTTGAGCCC
TCGGCGCCAGCGACCGACACAACCGCAGTTGTAGGCGTCATCAGTCCGCC
TCTCGGCGAGACACCAGCGCTGTTACGGGGCGTTTTCGCGGTTGGCTTGT
TCGAGGGTGCTGGTGCGGCAGGCCTTGCAGCCGGAGCTGGGGCAGGCGTG
GCAGCGAGGATACGAGGAACAGTGGGCGCAGACAGGACAGGAGCGGCCGG
CATCACCGGTACCGTTGCACCAACGCCCAAGCCTGTCACCGCAGGGCTAC
CACCGCTTCCCCCGGGCCCATCAACACTTTGCCAAACACTACCTCCCAAA
GCACCTACGATCATGCTACCGTTGGGGGTAGCGGACGGCGCCTGCCCAAG
CCCACTCACAACTCCGCGGGCGACACTTCTAAAGACGCCAACTCCCCCAT
TCGTGCTACAGTCGTGGCCGGCCGCTGCTCCCGCCGCCACCACCGCCGCC
GTTGCCGCAGTTGCCCTTGCCTTTGCCGCGGTCCTCTCTGCCTCCGCCGC
CTCTGCTGTCTCTGTCGCCTTGCTTGCCCTCCGCCTCTTCTTCCTGGACC
GCTTTCCTGGTTGGGAGGGAGCGCCTACAGCTCGGCCTGGTGCCACGCTC
GCCGCCACCGATGCATCCAACTTGCCTTTGTCCTTATCATCGGCTCTTCC
TCCGGCAAATGGTCCGTCCTCATTCGAGCGGCTAACGTTGTGGCCGGCCG
CCGCCTCCGCCACCTCCATTGCGGCCCTCATCGCAATCGCCTTCGACCTC
GCCGCAGTCGCCTTTGCCCTTGCCGTAGTCGCTTCTGCCTTCGCCGCCTC
CGCCTTCGCATTCGCTGCCTCTGCCACCTCCGCCATCTCCTTTGCCATCC
ACCGTTGTTTTCTTGATACAGATATCTCTTTTCCGCGGGGAGCCCTTATA
GCGTGGAGCCCTTATAGCGTGGCCTTGTGCCCCGCTCGCCACCACCGATG
CATCGATCTGGACTTCGTTGTCGTCAGCCCCCCCTCCAGCAAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig962:8513..9658+

>mRNA_L-elsbetiae_contig962.18596.1 ID=mRNA_L-elsbetiae_contig962.18596.1|Name=mRNA_L-elsbetiae_contig962.18596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig962:8513..9658+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCGCTTCCAATGCTATCGACACCGGCACCGCTCCTTTCCTTTCGAT
GCCGCCCTTGGCGGCCAAACCATTGCCGCTTGCAGCACCTACGGCTGAAG
TGCTCTTTGGGGTAGATTTGCCCTTTGCCCCCGCTGCCACACTTGAGCCC
TCGGCGCCAGCGACCGACACAACCGCAGTTGTAGGCGTCATCAGTCCGCC
TCTCGGCGAGACACCAGCGCTGTTACGGGGCGTTTTCGCGGTTGGCTTGT
TCGAGGGTGCTGGTGCGGCAGGCCTTGCAGCCGGAGCTGGGGCAGGCGTG
GCAGCGAGGATACGAGGAACAGTGGGCGCAGACAGGACAGGAGCGGCCGG
CATCACCGGTACCGTTGCACCAACGCCCAAGCCTGTCACCGCAGGGCTAC
CACCGCTTCCCCCGGGCCCATCAACACTTTGCCAAACACTACCTCCCAAA
GCACCTACGATCATGCTACCGTTGGGGGTAGCGGACGGCGCCTGCCCAAG
CCCACTCACAACTCCGCGGGCGACACTTCTAAAGACGCCAACTCCCCCAT
TCGTGCTACAGTCGTGGCCGGCCGCTGCTCCCGCCGCCACCACCGCCGCC
GTTGCCGCAGTTGCCCTTGCCTTTGCCGCGGTCCTCTCTGCCTCCGCCGC
CTCTGCTGTCTCTGTCGCCTTGCTTGCCCTCCGCCTCTTCTTCCTGGACC
GCTTTCCTGGTTGGGAGGGAGCGCCTACAGCTCGGCCTGGTGCCACGCTC
GCCGCCACCGATGCATCCAACTTGCCTTTGTCCTTATCATCGGCTCTTCC
TCCGGCAAATGGTCCGTCCTCATTCGAGCGGCTAACGTTGTGGCCGGCCG
CCGCCTCCGCCACCTCCATTGCGGCCCTCATCGCAATCGCCTTCGACCTC
GCCGCAGTCGCCTTTGCCCTTGCCGTAGTCGCTTCTGCCTTCGCCGCCTC
CGCCTTCGCATTCGCTGCCTCTGCCACCTCCGCCATCTCCTTTGCCATCC
ACCGTTGTTTTCTTGATACAGATATCTCTTTTCCGCGGGGAGCCCTTATA
GCGTGGAGCCCTTATAGCGTGGCCTTGTGCCCCGCTCGCCACCACCGATG
CATCGATCTGGACTTCGTTGTCGTCAGCCCCCCCTCCAGCAAATGACCCC
CCGCTTCCAATGCTATCGACACCGGCACCGCTCCTTTCCTTTCGATGCCG
CCCTTGGCGGCCAAACCATTGCCGCTTGCAGCACCTACGGCTGAAGTGCT
CTTTGGGGTAGATTTGCCCTTTGCCCCCGCTGCCACACTTGAGCCCTCGG
CGCCAGCGACCGACACAACCGCAGTTGTAGGCGTCATCAGTCCGCCTCTC
GGCGAGACACCAGCGCTGTTACGGGGCGTTTTCGCGGTTGGCTTGTTCGA
GGGTGCTGGTGCGGCAGGCCTTGCAGCCGGAGCTGGGGCAGGCGTGGCAG
CGAGGATACGAGGAACAGTGGGCGCAGACAGGACAGGAGCGGCCGGCATC
ACCGGTACCGTTGCACCAACGCCCAAGCCTGTCACCGCAGGGCTACCACC
GCTTCCCCCGGGCCCATCAACACTTTGCCAAACACTACCTCCCAAAGCAC
CTACGATCATGCTACCGTTGGGGGTAGCGGACGGCGCCTGCCCAAGCCCA
CTCACAACTCCGCGGGCGACACTTCTAAAGACGCCAACTCCCCCATTCGT
GCTACAGTCGTGGCCGGCCGCTGCTCCCGCCGCCACCACCGCCGCCGTTG
CCGCAGTTGCCCTTGCCTTTGCCGCGGTCCTCTCTGCCTCCGCCGCCTCT
GCTGTCTCTGTCGCCTTGCTTGCCCTCCGCCTCTTCTTCCTGGACCGCTT
TCCTGGTTGGGAGGGAGCGCCTACAGCTCGGCCTGGTGCCACGCTCGCCG
CCACCGATGCATCCAACTTGCCTTTGTCCTTATCATCGGCTCTTCCTCCG
GCAAATGGTCCGTCCTCATTCGAGCGGCTAACGTTGTGGCCGGCCGCCGC
CTCCGCCACCTCCATTGCGGCCCTCATCGCAATCGCCTTCGACCTCGCCG
CAGTCGCCTTTGCCCTTGCCGTAGTCGCTTCTGCCTTCGCCGCCTCCGCC
TTCGCATTCGCTGCCTCTGCCACCTCCGCCATCTCCTTTGCCATCCACCG
TTGTTTTCTTGATACAGATATCTCTTTTCCGCGGGGAGCCCTTATAGCGT
GGAGCCCTTATAGCGTGGCCTTGTGCCCCGCTCGCCACCACCGATGCATC
GATCTGGACTTCGTTGTCGTCAGCCCCCCCTCCAGCAAATGA
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