mRNA_L-elsbetiae_contig9615.18588.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9615.18588.1
Unique NamemRNA_L-elsbetiae_contig9615.18588.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9615.18588.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.340e-20
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:  173 EKLGNNLAAMANDLRRISALQTEFGAFASLKTLDQSTRGRGRACWNMMKEGLVPLEEYLHGDGSRDDQP 379
            EKLGN LA MA+DLRR+SALQTEFGAF SLKTL+     RGRACWN M+EGLV LEEYLHGD      P
Sbjct: 1405 EKLGN-LATMASDLRRVSALQTEFGAFTSLKTLNNP---RGRACWNTMREGLVTLEEYLHGDNKAGSVP 1469
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BLAST of mRNA_L-elsbetiae_contig9615.18588.1 vs. uniprot
Match: A0A6H5KS52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS52_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.510e-17
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  200 MANDLRRISALQTEFGAFASLKTLDQSTRGRGRACWNMMKEGLVPLEEYLHGD 358
            MA+DLRR+SALQTEFGAF SLKTL   +R RGRACWN M+EGLV LEEYLHGD
Sbjct:    1 MASDLRRVSALQTEFGAFTSLKTL---SRPRGRACWNTMREGLVTLEEYLHGD 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9615.18588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU3_ECTSI4.340e-2071.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS52_9PHAE1.510e-1779.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9615contigL-elsbetiae_contig9615:1217..2410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size382
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817027.3505206-CDS-L-elsbetiae_contig9615:1216..13991622817027.3505206-CDS-L-elsbetiae_contig9615:1216..1399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9615 1217..1399 +
1691683992.9121726-CDS-L-elsbetiae_contig9615:1216..13991691683992.9121726-CDS-L-elsbetiae_contig9615:1216..1399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9615 1217..1399 +
1622817027.3629246-CDS-L-elsbetiae_contig9615:2211..24091622817027.3629246-CDS-L-elsbetiae_contig9615:2211..2409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9615 2212..2409 +
1691683992.9283385-CDS-L-elsbetiae_contig9615:2211..24091691683992.9283385-CDS-L-elsbetiae_contig9615:2211..2409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9615 2212..2409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9615.18588.1prot_L-elsbetiae_contig9615.18588.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9615 1217..2409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9615.18588.1

>prot_L-elsbetiae_contig9615.18588.1 ID=prot_L-elsbetiae_contig9615.18588.1|Name=mRNA_L-elsbetiae_contig9615.18588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
RHRRRRGKQQQQQHAGGSGGSRARLRRGAGGSSRRGRRRRGRLPEGDAAA
APRVAWFGETRQQPCGHGQRPEEDIRPADRVRRLRVPQDARPVHPRPRPR
LLEHDEGRSRPARGVPPRRRQPRRPAP
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mRNA from alignment at L-elsbetiae_contig9615:1217..2410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9615.18588.1 ID=mRNA_L-elsbetiae_contig9615.18588.1|Name=mRNA_L-elsbetiae_contig9615.18588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig9615:1217..2410+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCACCGGCGGCGGCGGGGAAAGCAGCAGCAGCAGCAGCATGCCGGGGG
AAGCGGTGGCTCTCGAGCCCGGCTCCGACGCGGAGCTGGCGGTTCTAGTC
GCCGCGGCCGCCGCCGCCGTGGTCGCCTTCCTGAGGGAGACGCAGCAGCT
GCACCGCGGGTCGCGTGGTTCGGAGAAACTCGGGTGAGGGCGTGTGTGTG
TGTGTGTGTGTGTGTGTTTGTTTTTCGAGAGAGAGAAATGTATCGTTCAA
TGTTGGTTTGGAGGGGAAGATATATTAGTGATTTGGCGCGTTGAGAGGAC
ATGAGCGGGGGCGATGGCGACCATTTCGGCTGTTCTTGAGGGCGAGAAAG
ATCGTCCTGAGGTTAGCCGGTTTTGCGGTGGTGGTGGTGGTGTTGGTGTG
GTTGTCGCGCTGGCCTTCATGTCGTTAGCGATCGTTAACGTAACGGTGTC
TCTTTGTAGACCCTCTCATCTCCTGCCGAACGTCAGCCGGGCGAAAGCGG
GGGGGGAGGGGGGCGGGGTGGTTTATTCCGTTTTCGGTGACTGACCCCGT
TCTTTTTTTCTCTTCTTTTTTTCTTGGGGTCGGCACTTTTTATTTACAAG
CCATCCTGCGCGGGTTTTCTGCGATCCAGGAACGGGCCTATCGGGGGCGT
GGGCCTGGGCCGCCTACGCCTGCCCATTTGTACATTCAAATACTCCGTAA
ATAGAAGGTTTCTGCCGAATGGTTTTTATTCACATGTCGAACCCCCCCCC
CCCCGCGCGCGCGCCTTCAAACGGCCGTGGATGGCATACGAAGGGTGTCA
CCCGTGGCCCCTTTTCGAGGTGCTTTGGTGCTTTCCCTTGTTCGGCCATA
GAGACGCTTGCTTGCTTGCCTGCGGACGGCCAGCTCGCTCTATCTAACCA
AAGTTGAACCACGGGTGTGTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGCGCGTTGTGCGCGCGTTGTGCCCGCGTTTTCGGGGGAGCAGCAACA
ACCTTGCGGCCATGGCCAACGACCTGAGGAGGATATCCGCCCTGCAGACC
GAGTTCGGCGCCTTCGCGTCCCTCAAGACGCTCGACCAGTCCACCCGCGG
CCGCGGCCGCGCCTGCTGGAACATGATGAAGGAAGGTCTCGTCCCGCTCG
AGGAGTACCTCCACGGAGACGGCAGCCGCGACGACCAGCCCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9615:1217..2410+

>mRNA_L-elsbetiae_contig9615.18588.1 ID=mRNA_L-elsbetiae_contig9615.18588.1|Name=mRNA_L-elsbetiae_contig9615.18588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig9615:1217..2410+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCACCGGCGGCGGCGGGGAAAGCAGCAGCAGCAGCAGCATGCCGGGGG
AAGCGGTGGCTCTCGAGCCCGGCTCCGACGCGGAGCTGGCGGTTCTAGTC
GCCGCGGCCGCCGCCGCCGTGGTCGCCTTCCTGAGGGAGACGCAGCAGCT
GCACCGCGGGTCGCGTGGTTCGGAGAAACTCGGCGTCACCGGCGGCGGCG
GGGAAAGCAGCAGCAGCAGCAGCATGCCGGGGGAAGCGGTGGCTCTCGAG
CCCGGCTCCGACGCGGAGCTGGCGGTTCTAGTCGCCGCGGCCGCCGCCGC
CGTGGTCGCCTTCCTGAGGGAGACGCAGCAGCTGCACCGCGGGTCGCGTG
GTTCGGAGAAACTCGGCAACAACCTTGCGGCCATGGCCAACGACCTGAGG
AGGATATCCGCCCTGCAGACCGAGTTCGGCGCCTTCGCGTCCCTCAAGAC
GCTCGACCAGTCCACCCGCGGCCGCGGCCGCGCCTGCTGGAACATGATGA
AGGAAGGTCTCGTCCCGCTCGAGGAGTACCTCCACGGAGACGGCAGCCGC
GACGACCAGCCCCACAACAACCTTGCGGCCATGGCCAACGACCTGAGGAG
GATATCCGCCCTGCAGACCGAGTTCGGCGCCTTCGCGTCCCTCAAGACGC
TCGACCAGTCCACCCGCGGCCGCGGCCGCGCCTGCTGGAACATGATGAAG
GAAGGTCTCGTCCCGCTCGAGGAGTACCTCCACGGAGACGGCAGCCGCGA
CGACCAGCCCCA
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