mRNA_L-elsbetiae_contig9613.18586.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9613.18586.1
Unique NamemRNA_L-elsbetiae_contig9613.18586.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9613.18586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9613contigL-elsbetiae_contig9613:3755..5395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size679
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9613.18586.1prot_L-elsbetiae_contig9613.18586.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9613 3755..4916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817027.1449306-CDS-L-elsbetiae_contig9613:3754..42291622817027.1449306-CDS-L-elsbetiae_contig9613:3754..4229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9613 3755..4229 -
1691683992.7642875-CDS-L-elsbetiae_contig9613:3754..42291691683992.7642875-CDS-L-elsbetiae_contig9613:3754..4229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9613 3755..4229 -
1622817027.1554594-CDS-L-elsbetiae_contig9613:4875..49161622817027.1554594-CDS-L-elsbetiae_contig9613:4875..4916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9613 4876..4916 -
1691683992.7745802-CDS-L-elsbetiae_contig9613:4875..49161691683992.7745802-CDS-L-elsbetiae_contig9613:4875..4916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9613 4876..4916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817027.1663673-UTR-L-elsbetiae_contig9613:4916..49481622817027.1663673-UTR-L-elsbetiae_contig9613:4916..4948Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9613 4917..4948 -
1691683992.7845407-UTR-L-elsbetiae_contig9613:4916..49481691683992.7845407-UTR-L-elsbetiae_contig9613:4916..4948Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9613 4917..4948 -
1622817027.1783366-UTR-L-elsbetiae_contig9613:5265..53951622817027.1783366-UTR-L-elsbetiae_contig9613:5265..5395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9613 5266..5395 -
1691683992.7966037-UTR-L-elsbetiae_contig9613:5265..53951691683992.7966037-UTR-L-elsbetiae_contig9613:5265..5395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9613 5266..5395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9613.18586.1

>prot_L-elsbetiae_contig9613.18586.1 ID=prot_L-elsbetiae_contig9613.18586.1|Name=mRNA_L-elsbetiae_contig9613.18586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MSDIDAVQTEADARLPPAASMAAPSQAAAPSAIVAAAAAAPPAGRKGSAK
PPLPGVKDRRSSIRLAFQRSQPPCENENTATAAAVDSPARAGTVGAGAKT
TAGRRGGVGGGARKQAAKRASRRLSGDDLSGFIMKNADANLTKVLKDANK
RRAAGAAAAAPKSKVAKKGRAR
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mRNA from alignment at L-elsbetiae_contig9613:3755..5395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9613.18586.1 ID=mRNA_L-elsbetiae_contig9613.18586.1|Name=mRNA_L-elsbetiae_contig9613.18586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1641bp|location=Sequence derived from alignment at L-elsbetiae_contig9613:3755..5395- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGTGTGGCAGGCAACAGTGTGCAGGTGGCGCGAAAGAAGATATCT
GTTGTCTAGTGGAGACAGGCGAGAATTTGTGAAGGCTCGCCTGGGCTGAG
GACCAGCCTGACCTGCTCCAATCTCTCAAGGTGTGTATCCTGCATCTCAC
GTCTGATCGCGGCGCGCGCGCGTGCTATTATTTAGATGGCAGGCTTATCT
CCCCGTCGTTCTCTCACCTCGGGCCGTTCACGCTACGACCATTGACGGGC
AAGGGGAAAACACCCAAGCCTGACTGGAGTAACACATGGCGCGGCTGAAT
ACAAGCGTAGACTCTCGTGCCGGACGCAGCAGTCCCGCAGAAAAGAACAT
GCACGGCGGAGACTAAATTTAGTATCTCGATCCACCCAGCAGGACGAGAC
AGAGGTTGACGTTTTGGGTGCGTGTTCGGATACGTGCGGCGCCCCAGGTG
TGGACCAGCAGGAAAGGAGAGCACAAGCCATGAGCGACATTGATGCAGTG
CAAACCGAAGCTGATGCAAGGTATGTAAAAGTATCACAGCAGTATGTCTG
TATCTACACATGTATGAGCTGCTGTCCTGGTAGAGATGTGCTTGTCTCTT
GTCTGGGGCGAGGGTGGGGCATCACCCTGTACGAATGCCCCACATTGTAT
CTATGTAGACGGTTCCCTGTGGGTTGCTCGTGTCGAACGACCGTCTGCAG
AACACATCGACCGTTTCGTAGGCACAATTTATTTTATATGTGTGTTGTAC
AGGACGTGTCTAGGGATACATATCATAAGTACATGTTCTATGTCTGAAAA
CATTTTAGTCGTGGGGAACTTTAGTCCTCCGTATCTGGCTAGCTGTTGCC
AAGGTGTTGACGCATCTCCCCCCGTTTTTTATTTTTATTTTTTATTGCGC
ACTATTATCTTCTCCTGTTTGACGAGCCTTGTCTGAAAAACAGTTCGATC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCC
CCTTCCGTCCTTTTTTTTCCCCTTTTTTTTCGCCCTTTGTTTAAAAAAAC
TTCCACCCCCCCCCCCCCCCCCCCGCCACCCCCGCCACCACCCCCCTCAC
GAAACACTTTCCACAGACTCCCGCCGGCTGCAAGCATGGCGGCCCCTTCA
CAGGCTGCTGCTCCTTCCGCGATTGTTGCCGCCGCCGCCGCCGCTCCTCC
TGCTGGGCGCAAGGGGTCGGCAAAGCCGCCGCTCCCGGGCGTAAAGGATC
GGCGGTCGTCGATCCGTCTCGCCTTCCAACGCTCCCAGCCGCCATGCGAG
AATGAGAATACCGCCACCGCCGCTGCTGTCGACTCCCCCGCGAGGGCCGG
CACCGTCGGGGCGGGGGCCAAGACGACGGCCGGTCGCCGTGGAGGCGTAG
GCGGCGGGGCTAGAAAGCAGGCCGCGAAGCGCGCCTCACGGCGGCTGTCC
GGCGACGACCTCTCGGGGTTTATCATGAAGAACGCGGACGCCAACCTGAC
GAAGGTCCTGAAGGACGCAAACAAGCGGAGGGCGGCGGGGGCGGCGGCGG
CGGCACCGAAGTCGAAGGTGGCGAAGAAGGGTCGGGCAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9613:3755..5395-

>mRNA_L-elsbetiae_contig9613.18586.1 ID=mRNA_L-elsbetiae_contig9613.18586.1|Name=mRNA_L-elsbetiae_contig9613.18586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig9613:3755..5395- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGACATTGATGCAGTGCAAACCGAAGCTGATGCAAGATGAGCGAC
ATTGATGCAGTGCAAACCGAAGCTGATGCAAGACTCCCGCCGGCTGCAAG
CATGGCGGCCCCTTCACAGGCTGCTGCTCCTTCCGCGATTGTTGCCGCCG
CCGCCGCCGCTCCTCCTGCTGGGCGCAAGGGGTCGGCAAAGCCGCCGCTC
CCGGGCGTAAAGGATCGGCGGTCGTCGATCCGTCTCGCCTTCCAACGCTC
CCAGCCGCCATGCGAGAATGAGAATACCGCCACCGCCGCTGCTGTCGACT
CCCCCGCGAGGGCCGGCACCGTCGGGGCGGGGGCCAAGACGACGGCCGGT
CGCCGTGGAGGCGTAGGCGGCGGGGCTAGAAAGCAGGCCGCGAAGCGCGC
CTCACGGCGGCTGTCCGGCGACGACCTCTCGGGGTTTATCATGAAGAACG
CGGACGCCAACCTGACGAAGGTCCTGAAGGACGCAAACAAGCGGAGGGCG
GCGGGGGCGGCGGCGGCGGCACCGAAGTCGAAGGTGGCGAAGAAGGGTCG
GGCAAGGACTCCCGCCGGCTGCAAGCATGGCGGCCCCTTCACAGGCTGCT
GCTCCTTCCGCGATTGTTGCCGCCGCCGCCGCCGCTCCTCCTGCTGGGCG
CAAGGGGTCGGCAAAGCCGCCGCTCCCGGGCGTAAAGGATCGGCGGTCGT
CGATCCGTCTCGCCTTCCAACGCTCCCAGCCGCCATGCGAGAATGAGAAT
ACCGCCACCGCCGCTGCTGTCGACTCCCCCGCGAGGGCCGGCACCGTCGG
GGCGGGGGCCAAGACGACGGCCGGTCGCCGTGGAGGCGTAGGCGGCGGGG
CTAGAAAGCAGGCCGCGAAGCGCGCCTCACGGCGGCTGTCCGGCGACGAC
CTCTCGGGGTTTATCATGAAGAACGCGGACGCCAACCTGACGAAGGTCCT
GAAGGACGCAAACAAGCGGAGGGCGGCGGGGGCGGCGGCGGCGGCACCGA
AGTCGAAGGTGGCGAAGAAGGGTCGGGCAAGG
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