mRNA_L-elsbetiae_contig9611.18583.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9611.18583.1
Unique NamemRNA_L-elsbetiae_contig9611.18583.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9611.18583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9611contigL-elsbetiae_contig9611:3515..5898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9611.18583.1prot_L-elsbetiae_contig9611.18583.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9611 3605..5846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817027.0719628-UTR-L-elsbetiae_contig9611:3514..36041622817027.0719628-UTR-L-elsbetiae_contig9611:3514..3604Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9611 3515..3604 -
1691683992.7181225-UTR-L-elsbetiae_contig9611:3514..36041691683992.7181225-UTR-L-elsbetiae_contig9611:3514..3604Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9611 3515..3604 -
1622817027.112037-UTR-L-elsbetiae_contig9611:5846..58981622817027.112037-UTR-L-elsbetiae_contig9611:5846..5898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9611 5847..5898 -
1691683992.7546332-UTR-L-elsbetiae_contig9611:5846..58981691683992.7546332-UTR-L-elsbetiae_contig9611:5846..5898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9611 5847..5898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817027.0848086-CDS-L-elsbetiae_contig9611:3604..38051622817027.0848086-CDS-L-elsbetiae_contig9611:3604..3805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9611 3605..3805 -
1691683992.7340715-CDS-L-elsbetiae_contig9611:3604..38051691683992.7340715-CDS-L-elsbetiae_contig9611:3604..3805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9611 3605..3805 -
1622817027.0985181-CDS-L-elsbetiae_contig9611:5843..58461622817027.0985181-CDS-L-elsbetiae_contig9611:5843..5846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9611 5844..5846 -
1691683992.7451484-CDS-L-elsbetiae_contig9611:5843..58461691683992.7451484-CDS-L-elsbetiae_contig9611:5843..5846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9611 5844..5846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9611.18583.1

>prot_L-elsbetiae_contig9611.18583.1 ID=prot_L-elsbetiae_contig9611.18583.1|Name=mRNA_L-elsbetiae_contig9611.18583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MTKARHRDPPRWKSFGQAAKKPLSSPPRGNRCQEGHALGASGVCPGARLW
KKLWVRRKERIDDDKIR*
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mRNA from alignment at L-elsbetiae_contig9611:3515..5898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9611.18583.1 ID=mRNA_L-elsbetiae_contig9611.18583.1|Name=mRNA_L-elsbetiae_contig9611.18583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2384bp|location=Sequence derived from alignment at L-elsbetiae_contig9611:3515..5898- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTTGAGAAGAGCATCGGCGACCACCCCTCCTATCGGGTACATCCCTT
TGATGGCAAGTACCCCGATACCCAGAAGAGACCCGAAAGGCTGCATTTTA
TAGGCAGGATTAGGGGAAAGAAAGAGAGGGTGCACATAATGAAGATTCGA
CAACTGTTGTAGAGACACCGAGAAATGTCTGCTCCTAATGTATCGAGTGA
TAGGGCGCAACGTCCACCAGTATTTCGCGGTAAAAGGTAGACCAACACTT
TCTCTACATGTATTGTTGAAGCAACCGAGCAGTACGAGTGTGTTTTGTCT
CACCATGATTCCATGCGGCATTTGGGCGACCAAGTATGTTTTGTTGAGCT
TTGCCGCCTGCTTTGCCTCGCGCCGGCGCTTCCGCTCCCCCTTGCTGAGA
CCTTTGCCCTTTTTCTTTCCCGCGCGGGACTTCTTGTATTTTTTCTTGTG
CGAGTCGTCGATCACCCACGAAAAGCTGAAGTAATCCTTGAGCAGCTCCA
GAATGGGATGGAAAAACCTAGCGATGGGTACTCCATTCTGATGCTCTTGC
AGCCGGCTGTGGTGAAAGACACGGTAGAGAGCAGTGTTCAACGCGGGGGG
GGGGCAATAGCCCCAACGAGGATATAAAAATAACAGTACTTGAAGAACCA
CCTGCCGCGACTCAATTTTTTTAGATGATGGTCAGAAGTGGAGTTGTCAA
GACGACGACGCTCTAGACAAAAAGAAAAGGGCCAGTGGGGGGGGGGCGTT
TTGTTGGTATCCAGCTTCAACGTACTCACGAGATGCAGTTCATCGTGAGC
GCCGCGAAGAAAATAGTCGCAAGGTATCCTTGTGATGCAGAGCCTCGGTA
GACACACATCCCGACTCCCGAGTACAGGAGAACCGACCCATAGAGAATGG
TCGCAACCCCGCAAATCTGTTGCGAAACGGGTATGTAGCAGACATATCGA
GAGGGGATGAGGCAGGGAGAGAGGCGGCACAACGGTAGTGGAGACATGGG
CGTTGGGAACGGGTCCCACTTGTTCGCGAATGAGGTAAAAGGGGCTGCTA
CCTTGCGTGAAAATGCGCGTCCAAGAGAGATATCGACGAACGTTTGAAGA
CCAATTTGAGCTCATGTTGTGAACTACCAGCTGCTGTTTACAACAGTAGT
AGTTGATCTTCGTATGTGTAGGTCCATGCCAAGACGAGAGTTGAAGGGTT
CGCCAGTGTGAAGTTTCGCTGTTCGTTGTTAGTATTGTCGACGTTAGAGA
CGTGCTTGCGTAGATGACGTGGGCGAAGGGGGTTGTGTTGCCTTCGAACT
GAAATCGAAACCAGGCGAGCAAACGGAGCAGTTTCTGATAAAAATGTGTA
TTCTCGTACAAAAACATCACTCATTTTCGTACTCCCCTCACCGTCCACAG
GACCACGGTAGTCAAAAGACGTCGCCAGTAGGTGAGATCTTCCTTTGTGT
CGGGAAGGTTTTTACCACCGTGCAGACGGGGCTGTCTGGCCACGGACAGG
AAGCCGGCTAACCAGAACAAGGTCCAAGCCAAGTATAACCAGTTGAGGAT
AGTTATATATCGTGTGGATGTCGGAGGTGCAGACCACCAAGAGGCAAGTG
CGTGCCAGTGCTCAAGCCAAATCCGACTGGGAACATCATCTGGCTGTGCC
TGCCAAACAGTAATAATACGCCCCTGTGCGGGTGCGGCAGCAGGGATGTT
CATCGAAACAAAGTGTTTGCCCTTATGTAGCACACTTGAGGAGTAACACA
CACAATCCGAACATACATTGAAACACCTCCTTTAAAAGACAAAACTCGAT
TATTTGTTGCCACTGTGCCCATGAGAATTGAAAACTATGTAGTGCACGGA
CGTACGTACGTCGTGTACGACGAATCTACCGCCACAATCCTCACCTTTGT
TTTGGCATCCAAACAAAGTCGTTGTGGCCCTGAATTTACACAAACACATC
AAACACAACGTAGAGCAGTATTTCGTAGAACCAGTACAGTACCGTACGTG
AAAAATCTCGATACCTTAAAACTACCACACACGGTGTTTTTACCTTCTCG
GCCGCCGTTCTTGTCGCTGCTGTTGTCACAACTACCAATGCAGACGAAAG
CAAGGCATCGCGACCCTCCGCGCTGGAAGAGTTTCGGACAAGCGGCGAAG
AAACCCTTATCTTCACCCCCCAGGGGTAATAGATGCCAGGAGGGACATGC
TCTGGGGGCATCTGGGGTATGCCCGGGCGCTCGTCTTTGGAAGAAACTCT
GGGTGCGGAGGAAAGAAAGAATAGACGATGACAAAATAAGATAGGGGTGC
GCACTACAGAATCAAGTAGGTCGTGGAGAACAAAGTCGTTTGTCGACAGC
GACTCGCGCCAAAGCTGTGCATTCGTGTGAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9611:3515..5898-

>mRNA_L-elsbetiae_contig9611.18583.1 ID=mRNA_L-elsbetiae_contig9611.18583.1|Name=mRNA_L-elsbetiae_contig9611.18583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig9611:3515..5898- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGACGAAAGCAAGGCATCGCGACCCTCCGCGCTGGAAGAGTTTCGG
ACAAGCGGCGAAGAAACCCTTATCTTCACCCCCCAGGGGTAATAGATGCC
AGGAGGGACATGCTCTGGGGGCATCTGGGGTATGCCCGGGCGCTCGTCTT
TGGAAGAAACTCTGGGTGCGGAGGAAAGAAAGAATAGACGATGACAAAAT
AAGATAGACGAAAGCAAGGCATCGCGACCCTCCGCGCTGGAAGAGTTTCG
GACAAGCGGCGAAGAAACCCTTATCTTCACCCCCCAGGGGTAATAGATGC
CAGGAGGGACATGCTCTGGGGGCATCTGGGGTATGCCCGGGCGCTCGTCT
TTGGAAGAAACTCTGGGTGCGGAGGAAAGAAAGAATAGACGATGACAAAA
TAAGATAG
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