mRNA_L-elsbetiae_contig9604.18578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9604.18578.1
Unique NamemRNA_L-elsbetiae_contig9604.18578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9604.18578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9604contigL-elsbetiae_contig9604:2398..7478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size1281
Cds size528
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817026.1387355-UTR-L-elsbetiae_contig9604:2397..31501622817026.1387355-UTR-L-elsbetiae_contig9604:2397..3150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9604 2398..3150 -
1691683992.0171144-UTR-L-elsbetiae_contig9604:2397..31501691683992.0171144-UTR-L-elsbetiae_contig9604:2397..3150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9604 2398..3150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817026.1517124-CDS-L-elsbetiae_contig9604:3150..31641622817026.1517124-CDS-L-elsbetiae_contig9604:3150..3164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 3151..3164 -
1691683992.0330467-CDS-L-elsbetiae_contig9604:3150..31641691683992.0330467-CDS-L-elsbetiae_contig9604:3150..3164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 3151..3164 -
1622817026.1688886-CDS-L-elsbetiae_contig9604:4372..45121622817026.1688886-CDS-L-elsbetiae_contig9604:4372..4512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 4373..4512 -
1691683992.046353-CDS-L-elsbetiae_contig9604:4372..45121691683992.046353-CDS-L-elsbetiae_contig9604:4372..4512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 4373..4512 -
1622817026.1819046-CDS-L-elsbetiae_contig9604:4690..47511622817026.1819046-CDS-L-elsbetiae_contig9604:4690..4751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 4691..4751 -
1691683992.0579927-CDS-L-elsbetiae_contig9604:4690..47511691683992.0579927-CDS-L-elsbetiae_contig9604:4690..4751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 4691..4751 -
1622817026.194987-CDS-L-elsbetiae_contig9604:5062..51011622817026.194987-CDS-L-elsbetiae_contig9604:5062..5101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 5063..5101 -
1691683992.0683112-CDS-L-elsbetiae_contig9604:5062..51011691683992.0683112-CDS-L-elsbetiae_contig9604:5062..5101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 5063..5101 -
1622817026.2085361-CDS-L-elsbetiae_contig9604:5585..57251622817026.2085361-CDS-L-elsbetiae_contig9604:5585..5725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 5586..5725 -
1691683992.0783882-CDS-L-elsbetiae_contig9604:5585..57251691683992.0783882-CDS-L-elsbetiae_contig9604:5585..5725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 5586..5725 -
1622817026.22162-CDS-L-elsbetiae_contig9604:5894..59581622817026.22162-CDS-L-elsbetiae_contig9604:5894..5958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 5895..5958 -
1691683992.0913637-CDS-L-elsbetiae_contig9604:5894..59581691683992.0913637-CDS-L-elsbetiae_contig9604:5894..5958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 5895..5958 -
1622817026.2320366-CDS-L-elsbetiae_contig9604:6821..68631622817026.2320366-CDS-L-elsbetiae_contig9604:6821..6863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 6822..6863 -
1691683992.1013017-CDS-L-elsbetiae_contig9604:6821..68631691683992.1013017-CDS-L-elsbetiae_contig9604:6821..6863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 6822..6863 -
1622817026.2452748-CDS-L-elsbetiae_contig9604:7450..74781622817026.2452748-CDS-L-elsbetiae_contig9604:7450..7478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 7451..7478 -
1691683992.1107907-CDS-L-elsbetiae_contig9604:7450..74781691683992.1107907-CDS-L-elsbetiae_contig9604:7450..7478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9604 7451..7478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9604.18578.1prot_L-elsbetiae_contig9604.18578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9604 3151..7478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9604.18578.1

>prot_L-elsbetiae_contig9604.18578.1 ID=prot_L-elsbetiae_contig9604.18578.1|Name=mRNA_L-elsbetiae_contig9604.18578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
PAPPTPAPTEVQDGPEEEEETPSDDGFCAPGIPGIFGTTVDGVELCCHPG
CTQCGGPGCGTATPGLGSSACCHTIIARKGKECGVAPCILPGQGGPEEDE
EAPFAGFCAPDVPGILKTTGDGIDVCCNPGCTQCGGPGCGTATPGLASGD
CCTGPILRDGYECGEAPCILHRKHY*
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mRNA from alignment at L-elsbetiae_contig9604:2398..7478-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9604.18578.1 ID=mRNA_L-elsbetiae_contig9604.18578.1|Name=mRNA_L-elsbetiae_contig9604.18578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5081bp|location=Sequence derived from alignment at L-elsbetiae_contig9604:2398..7478- (Laminarionema elsbetiae ELsaHSoW15)
CCGGCCCCGCCTACTCCGGCTCCCACAGGTGAACAGAGAGCGACTTGAAA
CGTCCTGTTCATGCGGCTGCGGCACTTCAAGCCCTACACGTTTGACTCAC
ATTACATTTGTTAGAAATTACTCCAGACGTCGACGTGTGTATACATGTAT
TTATGTACATACATAGAGTTATACTCCCGAGGTGGAAACAGTCGCATATC
TATCTGGAGTCGTTTAACAAGTAAACGAACGAATACGAAAAACGCATTCT
GTAGTCAAGTCAAAAATAAAGACGAATTTGTGCGCATATGATAGTAGTAG
AATATACATATCTAAGACACGGCGGTGGTGGAGAGCGCCGCAGGTCTACA
TAGCCTATAGCGGAGTAGCGATGTTCGTTGTCAGATATTTTGTCAGCCTG
CACCCCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTA
CTACTGTGTCCTCCCTCTCTCTTCGCCTTTCCCCCTCTCTTCGTCTTCTT
CTTCCTTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTC
TCTCTCTCACTCTCCTCCTGTTCATACCCATATATGCCCGATTCGTGCCG
GCTGCCATGGAAAAGAAGTGCAAGATGGACCAGAGGAGGAGGAAGAGACT
CCTTCTGGTGAGCAACAAACTCTCGACTTCATCACGCAGGGCACAGCGAT
TATGAATAGTACAGCGTAATCGTTCGGGTAGTAGCCATTCACGGGCCGCG
CCCTTGGAAGCACCAGTCGCGCCTGATAAAGCGTTGCACTTGCTCAGGAG
TTTTGTCTAGCGCACTGTGTAACAATCCGCCACAACCGAAAATAGTAGTG
GCATATGTGCATAGGTATCCTTCACAACCCCCTCAGAAAGAACGCCTCTC
CGCTAATTAAAAACTGATTTTTGGGCACAAAACAACTTTGAGAACGCCCC
AGTGCCGTATTTTTGATTTTTCATTTGTTTTTGCCACTCTACCCTTGAGA
CCACCCCGGGGCAGTCCTTTTCGGCTGGTGTTTAGAACGCCCCACTCAGC
GTTATGTCCCTCAGGTATATCATATTTGTCTGCCTTTGTTGTTGTTTGTT
TCTGTTGACACGGTATTTTCCAGCACGGTTCATCCATACTGCTGTCGACA
AACGTGTGTGCGCCACGCCAATAAAACATGCAGTACGGTCCAATACCACA
AAGACACAAACCCCACGAAATACACCGCGAATCTCGCTATCTCGTTCATT
TCTTGCGTAATGATGCTTATGATTTCGTCCCGGAGGGTGTTTGATTTGGT
TGGAACAAGTGTCGCCCCTCTACCTTTGAGAACGCATTGGGGCGATATCT
TGACAGCAGCTGTACTATTTTGGCCTCCCCCGGGGCGTTCTCGAGCGATA
TCACGGTATATACGTCACGTCCGGTGTTCATTCACGTTGACTTGCTCACC
ATTAGACAAATCAGATTTGCACAGCCTGACAGCTCTCGCCTTGATTGTCT
ACTCGCCATTTCACTGACAGATGATGGCTTCTGCGCCCCTGGCATCCCTG
GCATATTTGGGACCACGGTCGACGGAGTCGAGTTGTAAGTGCCGGGCTCA
CGTTTACTTCTAGCTGCACCTGTGACCATGCAGAGGGGTTCAGGAATGGA
CGTCGCAGTGCTTCCAACCAAGGCGAACTAGACTGCGTGGTGGAATTCCT
GCTTATTCGACGTTACCCTCCCAACTACCGACAAATCAAACGAACGTTTT
TAGGTGCTGCCATCCTGGCTGTACGCAATGCGGTGGTCCTGGGTGTGGAA
CTGCCACTCCGGGCCTCGGGTCTAGCGCTTGCTGCCACACCATAATCGCT
CGCAAAGGCAAGGAGTGTGGAGTGGCCCCGTGCATCCTCCCCGGTGAGTG
CAAGGGAAGGACAACGCGTCCTCAAACACCGGCAGGGGGCGTGTGGCTGC
AGGGTGAGCACAGCAAGCAAGTAGATCGGAGACCACCAAGGCCCAGTTTG
GGGCATAAGGCGATCACATATCAGATATACATACCTAAGACACGGCGGTG
GTGGAGTAGCGATTCAGGTCGCCAGTTATTTTCGACAAGTAGAAAAATGT
CATGCATTATTTTGTCAACCTGCACCCCCCATCTCTCTTCCTCTCTCTCT
ATCTATCTGCCTTACTGTATCTCTCTCTATCTCCCTTTCTCTGTACCTCT
CTCTGTATTTTCACGTTTCTTTTTCTTTTTCTCTTATTGTCCATCTCTCT
CTATCTCCATCTTTCTCTATCTTTGTCACCCATGTATCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTTGTCCCCCTGTTCATGTCCATATATGCCCG
ATTTGTGCCGGCTGCCATGGACGAAAGGGCAAGGTGGACCAGAGGAGGAC
GAGGAGGCTCCTTTTGGTGAGCATTGGACTCTTGGCTTCACTACGCAGGG
CACAGCGATTATGAATAGCACAGCGTAACCCTTGGGGTAGTGGCCGTCAA
CGGCCTGCGTCCTTGGAAGCCCCAGTCGCGCCTGATAAAGCGTTGCACTC
GCTTAGGAGTTTTCTCGAGCGCGCCACGGGCTCTTGACAACCTTAATCAT
TGCATGGTCTCGATATGCCTCCGACGCTCATTCAGATCATCAGCGTGCTC
ACCAACAGACGATATCATAATAGCACGCGGGTCTGACAGCTCGTGTCTTG
ATTGTTTGTCCGCCGTTTCATTGACAGCTGGCTTCTGCGCCCCTGACGTC
CCTGGCATACTAAAGACAACGGGCGACGGAATCGATGTGTGAGTGCTGGG
GACACGTATAGCTGCACCTGTGACTATGCATGCACAGGGGTTCAGGTATC
GATGCACCAGTGCGTCGAAACAACGCGAACCAGACCGCGCGGTAGAACTG
CTGCTTATCATTTTATATACATACGCTACATACCCTCCGAACTACCGGCG
AATCAAACTTTATCAGGTGCTGCAATCCTGGCTGTACCCAATGCGGTGGT
CCTGGGTGTGGAACTGCCACTCCGGGTCTCGCGTCTGGCGACTGCTGCAC
CGGCCCAATCCTTCGCGACGGCTACGAGTGTGGGGAGGCTCCTTGCATCC
TCCACCGTGAGTGCAAAAGAAGGAGAACCCGCGGGGGGTACGAAGCTTGG
AGACCGGGCGATCATGCACGTGCAGGACACGGGAGTGGTGGAGAGCACCT
AGGATATGGGATATTGGCCGTTGAACGGACTTGTCGCTAAAGATACAGCA
CAACCACCGTATGTAGACTATGTATGTTTTTTGAGAAAAAAGTAGTGCCT
TACGGCACAAGATCGATATCCGAGTCCCGACCAATGCACACCCCTGTTCA
GAACATCATAATTTCGACCAAGGATTATAGATGCCCACAGTAGGCGGTTG
GGTTAAAAACAAAGAGGTTGGACGCGGTGAAGAACGATAAACATGTGCAT
CAGACCCGTTATTTGATATAGAAAATCTAGTCCGGGTGATGCTGGACCAT
GCTGGCTCGTGTGTTGTGACTTGTTGTGGCGAGTAAGTGCAAGCAGCGTC
CTGCCGCATACATTTTATATATTTCTCAGAGAGATGGAGATCCGGTTGCT
AGACCAGTGTGCGGGATTTATTTTCGGGACCAAACAAATAAGATTAGTGT
CGCGAAAAACCCATTCTTAAACCAAGTCGAAACCGCCAGCCGAATGAATT
TGTGCGCGTAATATATCTACTACTAGTAGGACTGTTCGGGGTGTTCTGTG
GGATCGAGCTTATTTTTCGGTTGCGGCATATTGGTTTGGACGGTGGGTTG
TCCTCTAGTTTAGTTGGCCGTTTCTTGCAGAAGAGTTTCAGACGTGTTGA
CATCCCGGACGAGACGTTTTTGTTGAAACCCGGGATTGACCGGCTGCCTC
TTTTAGACTTATCATTTCATGCCCCCGTACACAGCGAATATAACGTGCTG
GCGACTGCTAAGTCCGATTGCCTGCGTGTATTATTTGTCGCGCGTGATGG
CGCCACGAAACTGGTCACTTGCTGTGGAATATATACCTATTTATACAATA
GACTAGACATGAAATAGGGCACCTTCCGCGAGAATACCGTGTATATTTAG
CAGCCACCAAGCGTCGCCGGTGAAATACTTGCGTGTTTTTCAGCATGGTT
GGCTCTCCAACAAGGTTGAAGTTATCAGGGTGAGGCCACACCACCCCTGC
CTTGGCTTTGAAAGTCGTCAGCCATCACGCGTGTGATCAGAACGTTGCGT
GCTTGATAGAGAGGCTAAGCTTTTTCGCACCGTCACCCTTCCGTCTTGCC
GCTCCGTCCCAAAGGCAAGCACTACTAATAGTGACCCGGCAAGCAGCATA
AAACGAGGGCACGCGTGGCGCGATCCGTTTCAGGCGACGTCCAATATACA
TACATACATCAAATGCATCGCCGCAGGGGGCAGAATGCAGGAGGCAGCAT
CATCGGCGAAACGAAGCAGGACTGCATGAGGGTTATCTACATACATACAT
ACATATGTACTTCGTACATACGAGGAGCGGCCAAGCTTTTGCTTTTGTTT
ACCAAGCAAGCAAGTCCGGTGGCGAAATAGTGCGGCGTGTGCACAACGCT
CCAGGACCACCAGCGGAGTACAAGTACACACAGGAAAAAGGGACTATCTA
GTCTATATTATGTCATGATGAGTGTTGTTTGACGGAGGTTAGCCGGGAAC
GAACGCACGATCGCAGACCGAAGCAGGCCACCACTATGAACGGCCCACAA
TCAGACGTATATGTAAAAAGAGTGTTTTATAAATGCGTGACGTGTGTTAG
GGGGAGTGTAGAAATACATAATAAACGGCATGTTGTCTAGATACACAGCG
AAGCGAGTTTTTTCTCACATTCGTTCCTGGCAAAATTGAAAGCGATTTCG
TGAGTAAGTACTACTTCGACTTCATTGTTGACGAGGGTGGGGAGTGCTGA
ACCCTCTGCTCGCGATAAAAAAAACCCTAGGCAGGCACCGCAGGAGGGGG
TCCAACCCCCCCCTCCTATGTGACCCCGGTTGGGTCGTATGGCTAGAGTA
GAAGTGGAGGATGGGGGCAAGAGGGGCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9604:2398..7478-

>mRNA_L-elsbetiae_contig9604.18578.1 ID=mRNA_L-elsbetiae_contig9604.18578.1|Name=mRNA_L-elsbetiae_contig9604.18578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig9604:2398..7478- (Laminarionema elsbetiae ELsaHSoW15)
CCGGCCCCGCCTACTCCGGCTCCCACAGCCGGCCCCGCCTACTCCGGCTC
CCACAGAAGTGCAAGATGGACCAGAGGAGGAGGAAGAGACTCCTTCTGAA
GTGCAAGATGGACCAGAGGAGGAGGAAGAGACTCCTTCTGATGATGGCTT
CTGCGCCCCTGGCATCCCTGGCATATTTGGGACCACGGTCGACGGAGTCG
AGTTATGATGGCTTCTGCGCCCCTGGCATCCCTGGCATATTTGGGACCAC
GGTCGACGGAGTCGAGTTGTGCTGCCATCCTGGCTGTACGCAATGCGGTG
GTCCTGGGTGTGGAACTGCCACTCCGGGCCTCGGGTCTAGCGCTTGCTGC
CACACCATAATCGCTCGCAAAGGCAAGGAGTGTGGAGTGGCCCCGTGCAT
CCTCCCCGGTGCTGCCATCCTGGCTGTACGCAATGCGGTGGTCCTGGGTG
TGGAACTGCCACTCCGGGCCTCGGGTCTAGCGCTTGCTGCCACACCATAA
TCGCTCGCAAAGGCAAGGAGTGTGGAGTGGCCCCGTGCATCCTCCCCGGG
CAAGGTGGACCAGAGGAGGACGAGGAGGCTCCTTTTGGGCAAGGTGGACC
AGAGGAGGACGAGGAGGCTCCTTTTGCTGGCTTCTGCGCCCCTGACGTCC
CTGGCATACTAAAGACAACGGGCGACGGAATCGATGTCTGGCTTCTGCGC
CCCTGACGTCCCTGGCATACTAAAGACAACGGGCGACGGAATCGATGTGT
GCTGCAATCCTGGCTGTACCCAATGCGGTGGTCCTGGGTGTGGAACTGCC
ACTCCGGGTCTCGCGTCTGGCGACTGCTGCACCGGCCCAATCCTTCGCGA
CGGCTACGAGTGTGGGGAGGCTCCTTGCATCCTCCACCGTGCTGCAATCC
TGGCTGTACCCAATGCGGTGGTCCTGGGTGTGGAACTGCCACTCCGGGTC
TCGCGTCTGGCGACTGCTGCACCGGCCCAATCCTTCGCGACGGCTACGAG
TGTGGGGAGGCTCCTTGCATCCTCCACCGCAAGCACTACTAAGCAAGCAC
TACTAA
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