mRNA_L-elsbetiae_contig96.18573.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig96.18573.1
Unique NamemRNA_L-elsbetiae_contig96.18573.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig96.18573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig96contigL-elsbetiae_contig96:30186..34391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size584
Cds size582
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig96.18573.1prot_L-elsbetiae_contig96.18573.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig96 30186..34389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817025.2819076-CDS-L-elsbetiae_contig96:30185..304311622817025.2819076-CDS-L-elsbetiae_contig96:30185..30431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig96 30186..30431 +
1691683991.3807747-CDS-L-elsbetiae_contig96:30185..304311691683991.3807747-CDS-L-elsbetiae_contig96:30185..30431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig96 30186..30431 +
1622817025.2932305-CDS-L-elsbetiae_contig96:31730..317851622817025.2932305-CDS-L-elsbetiae_contig96:31730..31785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig96 31731..31785 +
1691683991.393533-CDS-L-elsbetiae_contig96:31730..317851691683991.393533-CDS-L-elsbetiae_contig96:31730..31785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig96 31731..31785 +
1622817025.3477573-CDS-L-elsbetiae_contig96:34108..343891622817025.3477573-CDS-L-elsbetiae_contig96:34108..34389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig96 34109..34389 +
1691683991.4057727-CDS-L-elsbetiae_contig96:34108..343891691683991.4057727-CDS-L-elsbetiae_contig96:34108..34389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig96 34109..34389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig96.18573.1

>prot_L-elsbetiae_contig96.18573.1 ID=prot_L-elsbetiae_contig96.18573.1|Name=mRNA_L-elsbetiae_contig96.18573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
LAFVLFFFGGGVVLDTPRAMGAAAGLHGSPVEEFFDAFDTLPWSPEPAAV
AREEEVFAGIDNRNSGSGPALGPLSADVKEPKAAATQRKAAILGSLFLSK
DASLLRPHQRKVIGPDAHDNGAAVGSTHWSSPRGRRPGVVGASGGNGNGG
GNADPTQLSTGTAVEPAGRRRESSSRAVELNTRSYSRSHSADYV
back to top

mRNA from alignment at L-elsbetiae_contig96:30186..34391+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig96.18573.1 ID=mRNA_L-elsbetiae_contig96.18573.1|Name=mRNA_L-elsbetiae_contig96.18573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4206bp|location=Sequence derived from alignment at L-elsbetiae_contig96:30186..34391+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCTTTCGTTCTGTTTTTTTTTGGGGGGGGCGTTGTGCTGGACACACC
ACGTGCTATGGGAGCAGCTGCAGGGCTGCATGGGTCTCCCGTGGAAGAGT
TTTTCGATGCGTTCGACACCCTTCCTTGGTCCCCCGAACCAGCCGCGGTA
GCCAGGGAGGAGGAGGTGTTCGCTGGGATCGACAACCGCAACAGCGGCAG
TGGTCCCGCTTTGGGCCCTCTCTCAGCTGACGTCAAAGAACCAAAGGTGA
GTCTTGGCGGCGTTGTTGGTATGGCTGGAACGCGAGTTTAGTTTGTGAAG
AGCTGTGTGGTGGCTTCAGTCACCGGGGGTGAACCACCCATAGAGCGGGT
GCGGGTCGATCCCAACCACATTGGGAGTTTCCCCGTCGACGCCCCGACTT
CAAAAGCCGTAAATCCTACACCAAGTCCCCGTCTGTAGACCCCTGGCCTC
CGCATTTTGCTAGGCACGCTAGGCCCTCGCCACTGCGCGGAGAAATTCTG
GGCTCGATTATCTCAATTTAGATGTATGTGTATGCCATGCGCGGGATTTC
AGCGGGACATCAGCGGGATATTTTATTCATCAGATGGTCAAGTTGACATT
GTAGACAAGTTCTAGCGCGTGGAAGCACGCGAGGGAGAGTGGCGGTGGCC
TCAGGGGAGTCAGGGAGAGGACTCTGTGCGACCACGTTCAGACCTCTGGC
AAGATGCCCCCTCGAGTACTGGAAATAAATGTGATGGTTGGTGTTGTTGT
TTTCTTCATATATATAATCGAGATTGCTAATCCCAAAAAATCCGTCTACT
TCTAGACAGCAACTCACGACCCGTGGTCACGAGAGGGGCACAAGAGTGTG
CTGGAGCAATCAAATTTTCCTTAAGAAACACGTACAGGAAATAAAAGTCA
CACAAAAAGAACGCAGAGGTGCACGTAATTTCCGGCACCGTTGGTGGGTG
TCCAACGAACTAAACCACACGTTCACATACACGCAGTCTAAATTTACCTC
CCCCTCTCGTCCACTACTAGGTGACCGATGCGTAGTTGCCAACTACAGCA
AAGTTTCTGTCTGAAGTTCTACCTGCTGTACACGGAGACGCGGCGACATC
AGCAGAGACGAAAAGTAGTTGAGTAGAGATGTAGTCTGAAGTGCTGTATG
GATGACAGGCCCCGCGTACATGCGTGCGATGAAAAAGAACAAGACATGAA
CCAAAGCCATCATATCTCAACCCAAGTCGATGCTATCACCCAAATCCCAT
CCCGAAATCGTATTGTGGCAGGCATGTCAAAGGGTGGGAAGATTATTTGT
GTATTGTCAAGTCTTCTGATATTTAGGTTGTTTTTCTGATCGCTTCGCCA
AATATTACGTCTCTGTATGGAATACCGTTTGAACTCCATATCGAGTCTTT
GCTCTAGTCTGGGTTAGGTCCCATCTTTGATTCTTTGTCTATTTTTAAAG
ACTTGAGTGGGGGTGCTACTACTGCTGTTGCATGGTACATACGTACTTGC
GTATACACGCTCATCCCTTGTTCCATCCCTCTGCTTCATGGACAGGCCGC
GGCGACACAAAGGAAGGCTGCCATCTTGGGATCATTGTTCCTTTCCAAAG
GTGACGTGGTATGCATGTAATCGAACGTTTGCTTGCAAGACAAGAACCGT
TCCCGTGTCGCATCGGTTTTCCTTGTGGTTTGGATGGAGGGTTGGGCGCA
ACGCTTGAAATAGCCGGAGGCGAGATTTTTTTGGGGATAAATGCCTTTTC
TTGTGAGGGAAAGGGAATAATACTTCAATACGTAGTAGGGAATATCCTCA
AATTTACTGTCCTGTCGCCCACTACGTAGAATCGACCGTCGGTGTCGGAC
AGTAGAATCGATCGTGGACGGGCGCATCGCATCCACAACAATAGTTTTCC
CCGTCCTGCTCGCAACCACCTTGATGGCCCGAAATTGGACTCCCCATATC
TTCCGAACCGAGCGACATGCCTACGGTAGATGCGCTGCTCAAGGCGTACC
TCAAATGAAGCGTGGGTACCGTGTATTATAAAAATAGGGTACCTCCTCGA
AGGGGGGCCCGGGAAGGCGCACGTGGCCGTTTCACGTGACGCAAGAGTGT
TGCTGGGTGACTTTTTAGTGTTCAGCAGCTGTGTGGAGCAGCATTCGTGG
CGCTTTTGGGTAGTTTGATGATAAGTATTGTGATGAAAAACGTTCAGAAC
AGCGGTCTAAATGTTTTTCTCGCCTGACGGCGAGAAAAAGGGGCCAAAAA
TGTTTCTCGCCTACGGCGAGAAAGACACCCCGCAACAATTTTTTTCGCCT
GCGGCGAAAGTGTTGCGGGCCTACAAATTGATGTTGCGGCAAGCCGCAAC
ATTACATTTTTCTACGTTGCGGAAACCTTCAACATCTCTATATTATGTTC
ACCACCGCAACTCCGCAACAGCTATTTTAAGCGCTGGTTGGGCGGAACTC
CAGTCCAGTGTATTTGCCTCATCACCGGGTCGTGCGGTTTTGTCCGACGA
CGATCACGTGTCGAGTCTTTACGTTTTTACCCCGTCTGTTTACGTACACA
CACACACATCGACCGCCCCGTTGTTTTGGACCGCCTTGCGAATAATTCCT
GTCTAGACTTATGTCTTCTAGTAGGAAAGAACTAGACAGGGGTTCTGTAA
CCGTGACCGTAATCCTAACCCTAAACCCCAAACCGACTCCCCATGAGCCG
TTTCCATACTTTATCCCATATGATTTATTCCAGTGAGGCCTGCGAAGGCT
ACTGCTGTTGTTTGTTTTTTGAGACAACAGAGACTAGTAGTAAAAACATA
TTGTGAACAGCGCGAAGCTGGTTAACATACCGTATGGATGTAGGTGCGAG
TTCAAGGTGCTGCCCCTGTATTCTTGGCAGATTGGGCGTGCGTACTTTTT
CTCCCGAGAAACAAAATATTGGTGACAAACATGCACCGTGGGGATCATGT
ACATTCGTAAATTATGAACAAATCCTTTTTAGGTTAGGTTGTCCTGTGAC
CACGGGAATAGGGTCGACCGCGTCAGTGATGGATAAGTACGGACCCATGG
AGGTCCTGGACAGAGAGATCGCAACGATTTTTAATGTGAAGACAAACACC
AACAAACAACAACAATCCCAGCCGCCGACATCACGCTGCTGCTGTGTCCG
CCAACTCGGTACCCGTATGTATGTGCCTACTTAGGCGACTGGCGCACCGT
GCTTTTTTTGGGGGGGGAATGGACGAAATTCGTAAGCGTCGCGACCCTGT
GGCACCTTAGACAAAACAGAACCCCCCTAATTGCACTGCTACTACTGTGA
CGCGACCCCCTTTTCCCCAGCTCGCGCGCGCTCACGAAATGCCCCCAAAT
TGCACTCCTGTGACGCCTTCCGCCCACCGCGCACGGTGTGTGGGCACATC
CCCCAACCGTTTTTCTCGTCTTCGATGCACCAAAACAGCAGTGCAGGCAC
TGGCGCTCAAAACACCTTCTCCGCAGACGGCCCCATTTTGTCCTCTACTC
TCCGGAGTCGACCCCCTGCTCTGCTAAAAGAATGTATTATCACCCTGTTT
TGTTTATATCCCACCCCTTCTTTGATCAACAGACCATCCTTCTTTGTTCA
CGTGCCCTCTCGCGGAGAGATATTTAGCAAGTGGAAATAACCTCTCCGCA
ACCCCGCACGAAAGATCCCGCGCACTCAACATCCACCCGGAAATTATCGA
TTGGCAAGATGCCCTGGCCATATCAGAACAATACTTCGAAGTATATCACA
TCATGTCAGAACGGTTTTTGTCTTTCAACATAACCACCGGGTCGCCCCTA
TTTCGTCAATTTCCCTTCCTTTTTCTCGCAAGCAAGCGCGATCGTGACAC
GATAAATCGCCCTATTGCTGTGCCCCCTCCCCCGGCGTTTGCGGGACACC
GTTAAATCTCCGCCGCCGAGCAGATGCGTCGTTGCTCCGGCCGCATCAGC
GGAAAGTGATAGGCCCCGACGCCCACGACAACGGTGCTGCTGTCGGCTCG
ACCCACTGGTCGTCACCGCGCGGACGACGGCCAGGCGTCGTCGGAGCCTC
CGGCGGCAACGGCAACGGCGGCGGCAACGCCGACCCCACGCAGCTGAGCA
CCGGCACAGCCGTCGAGCCAGCGGGCCGCCGCCGCGAAAGCAGCAGCAGG
GCAGTCGAGCTCAACACCCGGAGCTACAGCAGGTCCCACAGCGCCGACTA
CGTGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig96:30186..34391+

>mRNA_L-elsbetiae_contig96.18573.1 ID=mRNA_L-elsbetiae_contig96.18573.1|Name=mRNA_L-elsbetiae_contig96.18573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig96:30186..34391+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCTTTCGTTCTGTTTTTTTTTGGGGGGGGCGTTGTGCTGGACACACC
ACGTGCTATGGGAGCAGCTGCAGGGCTGCATGGGTCTCCCGTGGAAGAGT
TTTTCGATGCGTTCGACACCCTTCCTTGGTCCCCCGAACCAGCCGCGGTA
GCCAGGGAGGAGGAGGTGTTCGCTGGGATCGACAACCGCAACAGCGGCAG
TGGTCCCGCTTTGGGCCCTCTCTCAGCTGACGTCAAAGAACCAAAGCTCG
CTTTCGTTCTGTTTTTTTTTGGGGGGGGCGTTGTGCTGGACACACCACGT
GCTATGGGAGCAGCTGCAGGGCTGCATGGGTCTCCCGTGGAAGAGTTTTT
CGATGCGTTCGACACCCTTCCTTGGTCCCCCGAACCAGCCGCGGTAGCCA
GGGAGGAGGAGGTGTTCGCTGGGATCGACAACCGCAACAGCGGCAGTGGT
CCCGCTTTGGGCCCTCTCTCAGCTGACGTCAAAGAACCAAAGGCCGCGGC
GACACAAAGGAAGGCTGCCATCTTGGGATCATTGTTCCTTTCCAAAGGCC
GCGGCGACACAAAGGAAGGCTGCCATCTTGGGATCATTGTTCCTTTCCAA
AGATGCGTCGTTGCTCCGGCCGCATCAGCGGAAAGTGATAGGCCCCGACG
CCCACGACAACGGTGCTGCTGTCGGCTCGACCCACTGGTCGTCACCGCGC
GGACGACGGCCAGGCGTCGTCGGAGCCTCCGGCGGCAACGGCAACGGCGG
CGGCAACGCCGACCCCACGCAGCTGAGCACCGGCACAGCCGTCGAGCCAG
CGGGCCGCCGCCGCGAAAGCAGCAGCAGGGCAGTCGAGCTCAACACCCGG
AGCTACAGCAGGTCCCACAGCGCCGACTACGTGATGCGTCGTTGCTCCGG
CCGCATCAGCGGAAAGTGATAGGCCCCGACGCCCACGACAACGGTGCTGC
TGTCGGCTCGACCCACTGGTCGTCACCGCGCGGACGACGGCCAGGCGTCG
TCGGAGCCTCCGGCGGCAACGGCAACGGCGGCGGCAACGCCGACCCCACG
CAGCTGAGCACCGGCACAGCCGTCGAGCCAGCGGGCCGCCGCCGCGAAAG
CAGCAGCAGGGCAGTCGAGCTCAACACCCGGAGCTACAGCAGGTCCCACA
GCGCCGACTACGTG
back to top