mRNA_L-elsbetiae_contig9593.18565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9593.18565.1
Unique NamemRNA_L-elsbetiae_contig9593.18565.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9593.18565.1 vs. uniprot
Match: A0A6H5JL89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL89_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.650e-29
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:    2 GKGEAEAQSMDHWVAVGQKLTAEKHLADEVKKKVLVTRVNESLRRLLDDISEDNWMYDPTDLGQGNQHWR 211
            GKGEAEA  MDHW  VG+KLTAEKHLA++ KK VLV+ +  SLRRL+DDISEDNWMYDP DLGQG+QH R
Sbjct:   26 GKGEAEAHGMDHWALVGEKLTAEKHLAEDAKK-VLVSDIKSSLRRLMDDISEDNWMYDPIDLGQGHQHGR 94
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BLAST of mRNA_L-elsbetiae_contig9593.18565.1 vs. uniprot
Match: D7FQD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD5_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.670e-23
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 2 
Query:   29 MDHWVAVGQKLTAEKHLADEVKKKVLVTRVNESLRRLLDDISEDNWMYDPTDLGQGNQHWR 211
            MDHW  VG+KLTAEKHLA++ KK VLV+ +  SLRRL+DDISEDNWMYDP DLGQG+ H R
Sbjct:    1 MDHWALVGEKLTAEKHLAEDAKK-VLVSDIKSSLRRLMDDISEDNWMYDPIDLGQGHPHGR 60
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9593.18565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL89_9PHAE9.650e-2974.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQD5_ECTSI1.670e-2372.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9593contigL-elsbetiae_contig9593:620..1585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_006520.1
Exons2
Model size214
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9593.18565.1prot_L-elsbetiae_contig9593.18565.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9593 648..1585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817024.9772031-UTR-L-elsbetiae_contig9593:619..6471622817024.9772031-UTR-L-elsbetiae_contig9593:619..647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9593 620..647 +
1691683991.1593637-UTR-L-elsbetiae_contig9593:619..6471691683991.1593637-UTR-L-elsbetiae_contig9593:619..647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9593 620..647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817024.9886515-CDS-L-elsbetiae_contig9593:647..7161622817024.9886515-CDS-L-elsbetiae_contig9593:647..716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9593 648..716 +
1691683991.1791782-CDS-L-elsbetiae_contig9593:647..7161691683991.1791782-CDS-L-elsbetiae_contig9593:647..716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9593 648..716 +
1622817024.9995368-CDS-L-elsbetiae_contig9593:1468..15851622817024.9995368-CDS-L-elsbetiae_contig9593:1468..1585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9593 1469..1585 +
1691683991.1979885-CDS-L-elsbetiae_contig9593:1468..15851691683991.1979885-CDS-L-elsbetiae_contig9593:1468..1585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9593 1469..1585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9593.18565.1

>prot_L-elsbetiae_contig9593.18565.1 ID=prot_L-elsbetiae_contig9593.18565.1|Name=mRNA_L-elsbetiae_contig9593.18565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
MDHWVAVGQKLTAEKHLADEVKKKVLVTRVNESLRRLLDDISEDNWMYDP
TDLGQGNQHWR*
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mRNA from alignment at L-elsbetiae_contig9593:620..1585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9593.18565.1 ID=mRNA_L-elsbetiae_contig9593.18565.1|Name=mRNA_L-elsbetiae_contig9593.18565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig9593:620..1585+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCAAGGGAGAGGCGGAAGCACAAAGCATGGACCACTGGGTGGCGGTAG
GGCAGAAGCTGACGGCTGAGAAGCACCTGGCCGACGAAGTTAAGAAGGTG
TGTGGTGTGGGCGGTGGAGGGGGAAGGGCACGGGAGAGAGCCGGTTGTTT
TATCATCCAGTATTTTATCTTCTACATTTTGTACCGTGAGTGGGGCCACG
GGGTCGGTAGTTCCTCGGTTGATATTGTTGAAACGGGCTGGCTAGCGTAT
GTAGAGCCAGTTCAGAGAGCAAGTTATTATCGTAAGACGAAGCAAAGGTA
GAAGAGGACATTGCAGTCTCTGTGTGCTGCGAAGCCCGTGTGTGCAGAGC
GAGCACTGCTGTCCTGCTGTCCTGGTGGGGTTCAAAACAGAACCCAAACC
ATCGAAGTGTCCGGAGGGCATGATCTCGTATAGATACATATGCCCTTCAA
CCCCGCTGAAGGCGAAACAGCCCATTTGTCATCGAGTTGAGCAATTGCCT
CAACGAGTATGCGTGCGGGTCGCGAAAATGTTCACGACGTGTGCAGCGGT
GTTGTAAGACGCTCCAACCCGCAGCCTACCTTGTGTGAGGGCATGCCTGC
CTACCCATGGTGTTGGAACATGTAGCGAATATATGGCCGTGGGGCGCATC
CCGATGTAAGTACTGCTGTTTCCGCGGCTCGCCTTGGTTGCCATCTTCAT
AAGAAAACCCCAATGAAACGCTGCTGAGCGCCCCCCTCCCCGCGTCCCCC
ACGCCCTTCTTCTAACACTCTCGACTGCATGGCATCGGTGCCTTGTGTAT
GTATTTTGCCGGGCTGCTTTGCTTTTGTAAACCCTTGTGCGTGATCGAGA
AGGTGCTAGTCACGAGAGTCAACGAGAGCCTGCGGAGGCTTCTAGATGAC
ATCAGCGAGGACAACTGGATGTACGATCCGACCGACTTGGGTCAGGGAAA
CCAGCACTGGAGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9593:620..1585+

>mRNA_L-elsbetiae_contig9593.18565.1 ID=mRNA_L-elsbetiae_contig9593.18565.1|Name=mRNA_L-elsbetiae_contig9593.18565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig9593:620..1585+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCACTGGGTGGCGGTAGGGCAGAAGCTGACGGCTGAGAAGCACCT
GGCCGACGAAGTTAAGAAGATGGACCACTGGGTGGCGGTAGGGCAGAAGC
TGACGGCTGAGAAGCACCTGGCCGACGAAGTTAAGAAGAAGGTGCTAGTC
ACGAGAGTCAACGAGAGCCTGCGGAGGCTTCTAGATGACATCAGCGAGGA
CAACTGGATGTACGATCCGACCGACTTGGGTCAGGGAAACCAGCACTGGA
GATGAAAGGTGCTAGTCACGAGAGTCAACGAGAGCCTGCGGAGGCTTCTA
GATGACATCAGCGAGGACAACTGGATGTACGATCCGACCGACTTGGGTCA
GGGAAACCAGCACTGGAGATGA
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