mRNA_L-elsbetiae_contig9585.18561.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9585.18561.1
Unique NamemRNA_L-elsbetiae_contig9585.18561.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: D7FM94_ECTSI (P-type ATPase (PMID 12707717) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM94_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.770e-38
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDVSPSTALR 204
            MSFA+SYLFYKSVSWAVPLF+YAF+NGLSGQ FYDWVNS LWAL+YTGLPIVLLG+YDMDV PSTALR
Sbjct:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 68          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: A0A7S4DCU9_HETAK (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCU9_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 8.040e-11
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDVSPSTALR 204
            MS    Y+FYK++  ++P+F +AF  G  GQ FY  V    + L YT LPI+L+GIYD D+S   ALR
Sbjct:  302 MSKLVCYVFYKNILMSLPMFWFAFAAGFGGQKFYVEVGIQFYNLFYTSLPIILIGIYDRDISADLALR 369          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: A0A7S3LVN7_9EUKA (Phospholipid-transporting ATPase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LVN7_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 3.880e-10
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   10 ASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDVSPSTALR 204
            A +Y+FYK+V   + LFL+ F+NG SG   Y+ + S  + +++T LP+++LGI D DVSP  AL 
Sbjct:  520 AINYIFYKNVMNTLVLFLFCFFNGFSGSSLYESLTSAAYNVVWTSLPVIVLGIIDKDVSPKHALE 584          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: UPI000854440D (phospholipid-transporting ATPase IC-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854440D)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   16 SYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDVSPSTALR 204
            SY FYK+ ++ +  F YAF+ G SGQ  YD V  TL+ L+Y+ LP++++G+ D DVS   +++
Sbjct:  948 SYFFYKNFAYTLVHFWYAFFCGFSGQTVYDTVFMTLYNLLYSSLPVIIVGLQDQDVSDKVSMQ 1010          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: A0A0L0H983_SPIPD (Phospholipid-transporting ATPase n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H983_SPIPD)

HSP 1 Score: 60.8 bits (146), Expect = 3.490e-9
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   25 FYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDVSPSTAL 201
            F K+V W + LF Y F+ G S Q  YD+  + L+ +++TGLP++++G++D D+SP + L
Sbjct:  965 FVKNVVWVMVLFWYQFYAGFSAQSVYDFTYTLLYNIVFTGLPVIMIGVFDQDLSPRSIL 1023          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: A0A821B8Q9_9NEOB (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821B8Q9_9NEOB)

HSP 1 Score: 60.5 bits (145), Expect = 4.720e-9
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   16 SYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDVSPSTALR 204
            SY FYK+ ++ +  F Y+F+NG SGQ  YD V   L+ L+Y+ LPI+++G+ D DV    +++
Sbjct:  583 SYFFYKNFAYTLVHFWYSFFNGFSGQTVYDTVFIALYNLLYSSLPIIIVGLQDQDVGDKLSMQ 645          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: UPI001ABE5FBE (phospholipid-transporting ATPase IC n=1 Tax=Bufo bufo TaxID=8384 RepID=UPI001ABE5FBE)

HSP 1 Score: 60.5 bits (145), Expect = 4.760e-9
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   16 SYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDVSPSTALR 204
            +Y FYK+ ++ +  F YAF+NG SGQ  YD V   L+ L+Y+ LPI+++G+ D DV    +++
Sbjct:  943 TYFFYKNFAYTLVHFWYAFFNGFSGQTVYDTVFMALYNLLYSSLPIIVVGLQDQDVGDKLSMQ 1005          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: A0A2T7C6T6_9POAL (Phospholipid-transporting ATPase n=27 Tax=Panicoideae TaxID=147369 RepID=A0A2T7C6T6_9POAL)

HSP 1 Score: 60.1 bits (144), Expect = 6.510e-9
Identity = 25/63 (39.68%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   16 SYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDVSPSTALR 204
            +Y FYK++++ +  F + F  G SGQ FYD  N +L+ +++T LP++++G++D DVS S + R
Sbjct:  933 TYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWNQSLYNVIFTALPVIIVGLFDKDVSASLSKR 995          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: F0WPS0_9STRA (Phospholipid-transporting ATPase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WPS0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.220e-8
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDV 183
            MS    Y+FYK++   +  F Y F++G SGQ FY      L+  MYT LPI++LG++DMDV
Sbjct:  959 MSVLVGYMFYKNILMVLAQFYYTFYSGASGQKFYSEFYFQLYNAMYTTLPILVLGVFDMDV 1019          
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Match: A0A024GGU9_9STRA (Phospholipid-transporting ATPase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGU9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.220e-8
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLPIVLLGIYDMDV 183
            MS    Y+FYK++   +  F Y F++G SGQ FY      L+  MYT LPI++LG++DMDV
Sbjct:  961 MSVLVGYMFYKNILMVLAQFYYTFYSGASGQKFYSEFYFQLYNAMYTTLPILVLGVFDMDV 1021          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9585.18561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM94_ECTSI5.770e-3888.24P-type ATPase (PMID 12707717) n=2 Tax=Ectocarpus T... [more]
A0A7S4DCU9_HETAK8.040e-1147.06Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A7S3LVN7_9EUKA3.880e-1044.62Phospholipid-transporting ATPase n=1 Tax=Palpitomo... [more]
UPI000854440D1.360e-942.86phospholipid-transporting ATPase IC-like n=1 Tax=N... [more]
A0A0L0H983_SPIPD3.490e-940.68Phospholipid-transporting ATPase n=1 Tax=Spizellom... [more]
A0A821B8Q9_9NEOB4.720e-941.27Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
UPI001ABE5FBE4.760e-941.27phospholipid-transporting ATPase IC n=1 Tax=Bufo b... [more]
A0A2T7C6T6_9POAL6.510e-939.68Phospholipid-transporting ATPase n=27 Tax=Panicoid... [more]
F0WPS0_9STRA1.220e-845.90Phospholipid-transporting ATPase n=1 Tax=Albugo la... [more]
A0A024GGU9_9STRA1.220e-845.90Phospholipid-transporting ATPase n=1 Tax=Albugo ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9585contigL-elsbetiae_contig9585:6185..6982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D7FM94
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
Hectar predicted targeting categorysignal peptide
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Ec32 ortholog descriptionP-type ATPase (PMID 12707717)
Ec32 orthologEc-00_002770.1
Exons2
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817024.4408538-CDS-L-elsbetiae_contig9585:6184..62631622817024.4408538-CDS-L-elsbetiae_contig9585:6184..6263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9585 6185..6263 +
1691683990.764314-CDS-L-elsbetiae_contig9585:6184..62631691683990.764314-CDS-L-elsbetiae_contig9585:6184..6263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9585 6185..6263 +
1622817024.4519758-CDS-L-elsbetiae_contig9585:6857..69821622817024.4519758-CDS-L-elsbetiae_contig9585:6857..6982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9585 6858..6982 +
1691683990.7820094-CDS-L-elsbetiae_contig9585:6857..69821691683990.7820094-CDS-L-elsbetiae_contig9585:6857..6982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9585 6858..6982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9585.18561.1prot_L-elsbetiae_contig9585.18561.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9585 6185..6982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9585.18561.1

>prot_L-elsbetiae_contig9585.18561.1 ID=prot_L-elsbetiae_contig9585.18561.1|Name=mRNA_L-elsbetiae_contig9585.18561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDWVNSTLWALMYTGLP
IVLLGIYDMDVSPSTALR
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mRNA from alignment at L-elsbetiae_contig9585:6185..6982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9585.18561.1 ID=mRNA_L-elsbetiae_contig9585.18561.1|Name=mRNA_L-elsbetiae_contig9585.18561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig9585:6185..6982+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTTTGCGTCCAGCTACCTCTTCTACAAGTCGGTCAGCTGGGCTGT TCCTCTATTCCTCTACGCCTTCTGGAACGGTAAGTCCGATTGGCATGCGC ACTTACGGCGCCGCCCGGGGTAGACAGGCGTACAGACAGACCTGCGGTGA TGCTGCTGGTGACCAGCCTCTTCTTAATCTGTAACTTGAAATTTTGCATC CGGTTGGTTGGCTTCATGTTAACCTCCTTTTTCTCGAGGTATTTGTCTGT GCATATCCGGGGTGAGTTTTCCCGAAGGACGACACCGGTGGTGGTTCTGG GACTTGGGATTTCCAGTATCGCGAGCTTTCCTTGTGTACTACCTCCCCCC CCCCCCACGGCTATCCTACTGGGTACATGGTGGCCACTTTAGAGGCCAAA AACACGACAAAGGCAAAAGGCACAGCAGCGCAATTCGGCGCGGCGTAAAA CCCAACCCAACCGTGGTGGGGAAGAGAGCGGCCCCGTGTTTGGTGGCGTC TCGAGCACTTAAATAGCAGCAGGAAAAGGTAGGTGCTCTGTCAATGAACG TCTCGGCAGAGATGCGTGACGATCATAACTGAGAACAACTCGGGGCAGAG ATTTCTGCATCATAATAACACAACTGCGTCCCCCCCCCCCCCCCCCCGCA ACGCCGCGCGCGCGGGACCCCAGGACTGAGCGGGCAAGTTTTTTACGACT GGGTGAACTCTACCCTGTGGGCCCTCATGTACACGGGGTTACCGATCGTC CTTCTTGGGATCTACGATATGGATGTCTCGCCCTCCACCGCTCTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9585:6185..6982+

>mRNA_L-elsbetiae_contig9585.18561.1 ID=mRNA_L-elsbetiae_contig9585.18561.1|Name=mRNA_L-elsbetiae_contig9585.18561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig9585:6185..6982+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTTTGCGTCCAGCTACCTCTTCTACAAGTCGGTCAGCTGGGCTGT
TCCTCTATTCCTCTACGCCTTCTGGAACGATGAGCTTTGCGTCCAGCTAC
CTCTTCTACAAGTCGGTCAGCTGGGCTGTTCCTCTATTCCTCTACGCCTT
CTGGAACGGACTGAGCGGGCAAGTTTTTTACGACTGGGTGAACTCTACCC
TGTGGGCCCTCATGTACACGGGGTTACCGATCGTCCTTCTTGGGATCTAC
GATATGGATGTCTCGCCCTCCACCGCTCTGAGGGACTGAGCGGGCAAGTT
TTTTACGACTGGGTGAACTCTACCCTGTGGGCCCTCATGTACACGGGGTT
ACCGATCGTCCTTCTTGGGATCTACGATATGGATGTCTCGCCCTCCACCG
CTCTGAGG
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