mRNA_L-elsbetiae_contig9569.18551.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9569.18551.1
Unique NamemRNA_L-elsbetiae_contig9569.18551.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: D7FQB4_ECTSI (U-box domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB4_ECTSI)

HSP 1 Score: 491 bits (1263), Expect = 7.740e-166
Identity = 249/313 (79.55%), Postives = 262/313 (83.71%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTGEYHCLVIIADGQVTKERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHRRLKYGDAEALALSALAEVPDQYRAIQALGIMGAPGVPGRASSSVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQEYVCPLTLEVMIDPVVCEDGHSYERGGIEAWLRNHDTSPMSNAHLNSKMVVPNHALRNSIEAFRRERGY 941
            QEVL+GVGRGLGPLNRA+KIWCYGFGDE+TRDE+VFCFMADDQPCANL QALDRYASIAPAV+LSGPTSFAPLIRKAIEIVQDT EYHCLVIIADGQVTKERDTVRAIQDASNYPLSIIM+GVGEGPW+TCREFDNRLPGRRYDNFRFVEHRRLKYGDAEALALSALAEVPDQYRAI+ALGIM   G PG   +SVAA                           XXX             VPQ+++CPLTLEVMIDPVVCEDGHSYERG +EAWLRNHDTSPMSNAHLNSKM VPNHALRNSIEAFRRERGY
Sbjct:  132 QEVLRGVGRGLGPLNRAEKIWCYGFGDENTRDEAVFCFMADDQPCANLAQALDRYASIAPAVSLSGPTSFAPLIRKAIEIVQDTREYHCLVIIADGQVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGRRYDNFRFVEHRRLKYGDAEALALSALAEVPDQYRAIRALGIMEGAGAPGSGPTSVAASVAGGGVSGSAPSMAPVNMVMSGSAPPXXXPSELDEDEG----VPQDFICPLTLEVMIDPVVCEDGHSYERGALEAWLRNHDTSPMSNAHLNSKMAVPNHALRNSIEAFRRERGY 440          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: A0A8J4F4Y0_9CHLO (U-box domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F4Y0_9CHLO)

HSP 1 Score: 206 bits (523), Expect = 1.410e-55
Identity = 168/370 (45.41%), Postives = 224/370 (60.54%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTG-EYHCLVIIADGQVTK------------ERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHRRLKYGDA------EAL-ALSALAEVPDQYRAIQALGIMGA-------------------PGVP-----GRASSSVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV----------PQE---YVCPLTLEVMIDPVVCEDGHSYERGGIEAWLRNHDTSPMSNAHL-NSKMVVPNHALRNSIEAFRRERG 938
            ++ +  +GR L   +    I CYGFGD +T D SVF F+  D+PC  L Q L RY  + P V ++GPTSFAP IR+A  IV+ +G +YH L+++ADGQV++            E+DT+ AI +AS+ PLSIIM+GVG+GPWD  ++FD+ LP R++DNF+FV    +    +      EAL AL AL E+P+QY+ IQ LG+M                     P VP     G  S +  +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             PQ    +VCP+T +VM DPV+  DG++YER  I  WL+N   SPM+NA +     ++PNHALR+SI  ++++ G
Sbjct:  103 EDAIGAIGRTLSAFDDDGLIPCYGFGDVTTGDRSVFSFLPGDKPCEGLEQVLWRYRELCPYVRMAGPTSFAPAIRQACRIVEQSGYQYHILLLVADGQVSRSSDLLPGQYSDQEQDTIAAIVEASHLPLSIIMVGVGDGPWDLMKDFDDALPERQFDNFQFVNFTDVMANSSGNLARREALFALRALMEIPEQYQMIQRLGLMSRNSIVRTRAPHRKPINPVLDPPVPPSIMNGLGSGASVSKPPKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSTGARTAEDRKGPQPDSMFVCPITQDVMTDPVIATDGYTYERSAIMQWLKNKTISPMTNAPMPGGTTLIPNHALRSSILQWKQDHG 472          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: A0A8J4C8P0_9CHLO (U-box domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C8P0_9CHLO)

HSP 1 Score: 206 bits (523), Expect = 1.440e-55
Identity = 131/370 (35.41%), Postives = 186/370 (50.27%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTG-EYHCLVIIADGQVTK------------ERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHRRLKYGDA------EAL-ALSALAEVPDQYRAIQALGIMGA-------------------PGVPGRASSSVA---------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQE---YVCPLTLEVMIDPVVCEDGHSYERGGIEAWLRNHDTSPMSNAHL-NSKMVVPNHALRNSIEAFRRERG 938
            ++ +  +GR L   +    I CYGFGD +T D SVF F+  D+PC  L Q L RY  + P V ++GPTSFAP IR+A  IV+ +G +YH L+++ADGQV++            E DT+ AI +AS+ PLSIIM+GVG+GPWD  ++FD+ LP R++DNF+FV    +    +      EAL AL AL E+P+QY+ IQ LG+M                     P VP    S +                A                                            PQ    ++CP+T +VM DPV+  DG++YER  I  WL+N   SPM+NA +     ++PNHALR+SI  ++++ G
Sbjct:  103 EDAIGAIGRTLSAFDDDGLIPCYGFGDVTTGDRSVFSFLPGDKPCEGLEQVLWRYRELCPYVRMAGPTSFAPAIRQASRIVEQSGYQYHILLLVADGQVSRSSDLLPGQHSDQEADTIAAIVEASHLPLSIIMVGVGDGPWDLMKDFDDALPERQFDNFQFVNFTEVMASTSGNVERREALFALRALMEIPEQYQMIQRLGLMSTNSIVRARAPRRKPANPVLDPPVPPSIMSGLGSGGSVPKQLTKTTPIAEPLSAAAVGVITGGGKSGAQAGGDGLGVGFGGSTRVGTTDDRKGPQPDPMFLCPITQDVMTDPVIATDGYTYERSAIMQWLKNKTISPMTNAPMPGGTTLIPNHALRSSILQWKQDNG 472          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: A0A835WNU3_9CHLO (U-box domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WNU3_9CHLO)

HSP 1 Score: 203 bits (516), Expect = 3.330e-54
Identity = 137/392 (34.95%), Postives = 188/392 (47.96%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTG-EYHCLVIIADGQVTK------------ERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHRRLK---YGDA---EAL-ALSALAEVPDQYRAIQALGIMGA---------------------PGVPGRASSSVA-------------------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQE-YVCPLTLEVMIDPVVCEDGHSYERGGIEAWLRNHDTSPMSNAHL-NSKMVVPNHALRNSIEAFRRERG 938
            +E +  +GR L   +    I CYGFGD +T D SVF F+ADDQPC  L QAL RY  + P + ++GPTSFAP IR+A  IV+ +G +YH L+++ADGQV++            E+DT+ AI +AS+ PLSIIM+GVG+GPWD  ++FD+ LP R +DNF+FV    L     GD    EAL AL AL E+P+QY AIQ +GI+G                      P VP    +  A                                     A                                           VP   +VCP+T +VM DPV+  DG++YER  I  WL     SP++N  +    +++PNH LR+SI  +R++ G
Sbjct:  118 EEAIGVIGRTLSAFDDDGLIPCYGFGDVTTGDSSVFSFLADDQPCRGLEQALWRYRELCPYIRMAGPTSFAPAIRQASRIVEASGGQYHILLLVADGQVSRPSGLPDNVKSEQEQDTIDAIVEASSLPLSIIMVGVGDGPWDLMKDFDDALPERAFDNFQFVNFSELMSSTQGDRSRREALFALRALMEIPEQYNAIQRMGILGRTAAAQVARGRTQRRPGNPPLDPPVPPHLMAGTASGPSTTTTCGPAGGAXXXXXXXXXXXXXXXXXXXXSGAGDAAAAPSKGTQSARTSGTGYGVAAGGGGPTGPTPMAPAAGGPVPDPMFVCPITQDVMKDPVIATDGYTYERAAITDWLARKAVSPLTNQRMPGGNVLIPNHNLRSSIMEWRQKHG 509          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: UPI00106C93F7 (E3 ubiquitin-protein ligase RGLG5-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C93F7)

HSP 1 Score: 196 bits (499), Expect = 2.690e-53
Identity = 102/191 (53.40%), Postives = 135/191 (70.68%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTGEYHCLVIIADGQVTKERD--TVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHRRLKYG----DAEA-LALSALAEVPDQYRAIQALGIMG 554
            Q V++ +G GL  L+    I  +GFGDE T+D SVF  M D+ PC  +   L RY     +VALSGPTSFAP+IRK+I+IVQ TG+YH L+IIADG+V  E+D  T  AI +ASNYPLSI+++GVG+GPW+   E+D++LP RR+DNF+FVE    K      DAE   A+ AL E+PDQYRAI++LG++G
Sbjct:  133 QRVIRAIGEGLQDLDEDHLIPVFGFGDERTKDHSVFSLM-DESPCKGVEDVLARYTRTVGSVALSGPTSFAPIIRKSIQIVQQTGKYHVLLIIADGRVENEQDFDTRAAIVEASNYPLSIVLVGVGDGPWEVMHEYDDKLPQRRFDNFQFVEFLEKKSSRFSRDAEEDFAVQALMEIPDQYRAIRSLGLLG 322          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: A0A7D9LQJ9_PARCT (E3 ubiquitin- ligase RGLG4-like (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LQJ9_PARCT)

HSP 1 Score: 193 bits (491), Expect = 8.630e-53
Identity = 101/191 (52.88%), Postives = 133/191 (69.63%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTGEYHCLVIIADGQVTKERD--TVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHRRLKYG----DAEA-LALSALAEVPDQYRAIQALGIMG 554
            Q V++ +G  L   N  + I  YGFGD+ T+  SVF  + D+ PC  + + L RY     +V+LSGPTSFAP+IRKAIEIVQ TG+YH L+IIADG+V  E D  T  AI DASNYPLSI+++GVG+GPW+   E+D++LP RR+DNF+FVE    K      D EA  A+ AL E+PDQYRAI++LG++G
Sbjct:   67 QRVIRAIGETLQEFNEDNLIPVYGFGDDRTKGHSVFPLI-DESPCKGVDEVLTRYTRTVGSVSLSGPTSFAPIIRKAIEIVQQTGKYHVLLIIADGRVENEHDLETRSAIVDASNYPLSIVLVGVGDGPWEVMHEYDDKLPQRRFDNFQFVEFVEKKNSRFSRDIEAEFAVQALMEIPDQYRAIRSLGLLG 256          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: A0A250WT19_9CHLO (U-box domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WT19_9CHLO)

HSP 1 Score: 196 bits (498), Expect = 2.750e-52
Identity = 128/352 (36.36%), Postives = 169/352 (48.01%), Query Frame = 3
Query:   21 VGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTG-EYHCLVIIADGQVTK------------ERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHRRLKYGDAEA-------LALSALAEVPDQYRAIQALGIMGA-----PGV-----PGRASSSVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------VPQEYVCPLTLEVMIDPVVCEDGHSYERGGIEAWLRNHDTSPMSNAHLNSKMVVPNHALRNSIEAFRRE 932
            + R L   +    I  +GFGD +T D  VF F     P   L     RY  +AP V L+GPTSFAP I +A+  V D+G +YH LVIIADGQVT+            ER+T+ AI +AS  PLSI+M+GVG+GPWD  REFD+R+P RR+DNF+FV    +    +          AL  L E+P+QY+ IQ LG++G       G+     PG  S   AA                                                              P  ++CP+T E+M DPV+  DG+SY+R  I  WL+ H TSPM+N  L  K + PNHALR+SI  +  E
Sbjct:   91 IARTLQSFDDDGLIPAFGFGDATTGDAGVFHFFRGGIPAQGLEALAYRYRELAPHVKLAGPTSFAPAIYQAMRTVCDSGGQYHILVIIADGQVTRPTDTPPNYCSKQERETIDAIVNASELPLSIVMVGVGDGPWDVMREFDDRIPQRRWDNFQFVNFTEIAAAYSSMPQRMETIFALRTLMEIPEQYKIIQKLGLLGRRTARIAGIKVMDPPGPVSGYGAAVQPSVAPPQQANFVNPSPVAAAGPSLLPEPGNTSIQNPGSASMRALFTKGSSMLRESTPEGPPPMFICPITQEIMKDPVMAADGYSYDRSSITQWLQTHHTSPMTNTQLPHKTLTPNHALRSSIMEYLEE 442          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: A0A8B8EAA8_CRAVI (E3 ubiquitin-protein ligase RGLG4-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EAA8_CRAVI)

HSP 1 Score: 192 bits (488), Expect = 3.930e-52
Identity = 97/187 (51.87%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTGEYHCLVIIADGQVTKERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHR----RLKYGDAEALALSALAEVPDQYRAIQALGIM 551
            Q+V+  + + L P +  + I  +GFGD  T  +SVF FM+D  PC   G+ LD+Y+ IA  V  SGPT+FAPLI KAIEIV+ T +YH L+IIADGQV +E  TV AI +ASNYPLSI+++GVG+GPWDT  EFD+ LP R++DN +FV++     ++K+ DA   AL AL E+P QYR I+ LG +
Sbjct:  130 QKVISVIAQTLEPFDDDNYIPAFGFGDTKTLGDSVFPFMSDGSPCKGFGEVLDKYSDIATRVVFSGPTNFAPLIHKAIEIVKTTKKYHILIIIADGQVNEEERTVEAIVEASNYPLSIVVVGVGDGPWDTMDEFDDCLPNRKFDNCQFVDYHAVTSKVKHPDAN-FALHALMEIPLQYRTIKKLGYL 315          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: A0A7S4D2N9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D2N9_9EUGL)

HSP 1 Score: 191 bits (484), Expect = 5.070e-52
Identity = 95/187 (50.80%), Postives = 133/187 (71.12%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTGEYHCLVIIADGQVTKERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHRRLK--YGDAEA-LALSALAEVPDQYRAIQALGIMG 554
            Q+V+  +G+ L   +  + I  +GFGD +T+D SVF FM D +PC  L   L RY  I PAV+LSGPTSFAP+I +A++I  +  E++ L+IIADGQVT E+ T+RAI+ AS YPL IIM+GVG+GPWD  + FD++LP R++DNF+FV++  L   +G  EA  AL AL E+P Q+ AI+ LG++G
Sbjct:  106 QKVISIIGKTLSAFDEDNLIPVFGFGDATTKDRSVFPFMPDARPCQGLEDVLHRYTQITPAVSLSGPTSFAPIIDEAVKICAEHMEFNILLIIADGQVTNEKATIRAIERASQYPLCIIMVGVGDGPWDMMKAFDDKLPYRQFDNFQFVDYHSLMAMHGQTEARFALMALMEIPQQFNAIKRLGLLG 292          
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Match: UPI00148A77D2 (E3 ubiquitin-protein ligase RGLG4-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A77D2)

HSP 1 Score: 190 bits (483), Expect = 1.930e-51
Identity = 94/185 (50.81%), Postives = 131/185 (70.81%), Query Frame = 3
Query:    3 QEVLKGVGRGLGPLNRADKIWCYGFGDESTRDESVFCFMADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTGEYHCLVIIADGQVTKERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRLPGRRYDNFRFVEHR----RLKYGDAEALALSALAEVPDQYRAIQALG 545
            Q+V+  + + L P +  + I  +GFGD  T  +SVF FM+D  PC    + LDRY+ IA  V  SGPT+FAPL+ KAIEIV+ T +YH L+I+ADGQV +E+ TV AI +ASN+PLSI+++GVG+GPWDT  EFD+ LP R++DNF+FV++     ++K+ DA   AL AL E+P QY+ I+ LG
Sbjct:  128 QKVISVIAQTLEPFDDDNYIPAFGFGDTKTLGDSVFPFMSDGSPCKGFAEVLDRYSDIATKVTFSGPTNFAPLVYKAIEIVKTTQKYHILIIVADGQVNEEQQTVEAIVEASNHPLSIVVVGVGDGPWDTMDEFDDCLPNRKFDNFQFVDYHAVTSKVKHPDAN-FALHALMEIPLQYKTIRKLG 311          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9569.18551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB4_ECTSI7.740e-16679.55U-box domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A8J4F4Y0_9CHLO1.410e-5545.41U-box domain-containing protein n=2 Tax=Volvox afr... [more]
A0A8J4C8P0_9CHLO1.440e-5535.41U-box domain-containing protein n=1 Tax=Volvox ret... [more]
A0A835WNU3_9CHLO3.330e-5434.95U-box domain-containing protein n=1 Tax=Chlamydomo... [more]
UPI00106C93F72.690e-5353.40E3 ubiquitin-protein ligase RGLG5-like n=1 Tax=Den... [more]
A0A7D9LQJ9_PARCT8.630e-5352.88E3 ubiquitin- ligase RGLG4-like (Fragment) n=2 Tax... [more]
A0A250WT19_9CHLO2.750e-5236.36U-box domain-containing protein n=1 Tax=Chlamydomo... [more]
A0A8B8EAA8_CRAVI3.930e-5251.87E3 ubiquitin-protein ligase RGLG4-like n=1 Tax=Cra... [more]
A0A7S4D2N9_9EUGL5.070e-5250.80Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
UPI00148A77D21.930e-5150.81E3 ubiquitin-protein ligase RGLG4-like n=1 Tax=Cra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9569contigL-elsbetiae_contig9569:2708..6626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.8
Seed ortholog evalue8e-114
Seed eggNOG ortholog2880.D7FQB4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of response to water deprivation
EggNOG OGsKOG1327@1,KOG1327@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-01_006740.1
Exons5
Model size1964
Cds size828
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817023.0269854-UTR-L-elsbetiae_contig9569:2707..37271622817023.0269854-UTR-L-elsbetiae_contig9569:2707..3727Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9569 2708..3727 -
1691683989.687483-UTR-L-elsbetiae_contig9569:2707..37271691683989.687483-UTR-L-elsbetiae_contig9569:2707..3727Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9569 2708..3727 -
1622817023.0996099-UTR-L-elsbetiae_contig9569:6510..66261622817023.0996099-UTR-L-elsbetiae_contig9569:6510..6626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9569 6511..6626 -
1691683989.7557228-UTR-L-elsbetiae_contig9569:6510..66261691683989.7557228-UTR-L-elsbetiae_contig9569:6510..6626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9569 6511..6626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817023.0420065-CDS-L-elsbetiae_contig9569:3727..39101622817023.0420065-CDS-L-elsbetiae_contig9569:3727..3910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 3728..3910 -
1691683989.6992176-CDS-L-elsbetiae_contig9569:3727..39101691683989.6992176-CDS-L-elsbetiae_contig9569:3727..3910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 3728..3910 -
1622817023.0549257-CDS-L-elsbetiae_contig9569:4474..46801622817023.0549257-CDS-L-elsbetiae_contig9569:4474..4680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 4475..4680 -
1691683989.7115896-CDS-L-elsbetiae_contig9569:4474..46801691683989.7115896-CDS-L-elsbetiae_contig9569:4474..4680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 4475..4680 -
1622817023.0681133-CDS-L-elsbetiae_contig9569:5084..52151622817023.0681133-CDS-L-elsbetiae_contig9569:5084..5215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 5085..5215 -
1691683989.7216742-CDS-L-elsbetiae_contig9569:5084..52151691683989.7216742-CDS-L-elsbetiae_contig9569:5084..5215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 5085..5215 -
1622817023.080155-CDS-L-elsbetiae_contig9569:5686..58171622817023.080155-CDS-L-elsbetiae_contig9569:5686..5817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 5687..5817 -
1691683989.7314327-CDS-L-elsbetiae_contig9569:5686..58171691683989.7314327-CDS-L-elsbetiae_contig9569:5686..5817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 5687..5817 -
1622817023.0898654-CDS-L-elsbetiae_contig9569:6333..65101622817023.0898654-CDS-L-elsbetiae_contig9569:6333..6510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 6334..6510 -
1691683989.741667-CDS-L-elsbetiae_contig9569:6333..65101691683989.741667-CDS-L-elsbetiae_contig9569:6333..6510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9569 6334..6510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9569.18551.1prot_L-elsbetiae_contig9569.18551.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9569 3728..6510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9569.18551.1

>prot_L-elsbetiae_contig9569.18551.1 ID=prot_L-elsbetiae_contig9569.18551.1|Name=mRNA_L-elsbetiae_contig9569.18551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
MADDQPCANLGQALDRYASIAPAVALSGPTSFAPLIRKAIEIVQDTGEYH
CLVIIADGQVTKERDTVRAIQDASNYPLSIIMIGVGEGPWDTCREFDNRL
PGRRYDNFRFVEHRRLKYGDAEALALSALAEVPDQYRAIQALGIMGAPGV
PGRASSSVAASVAVGGIAGEVPGMAPMQATMNVPMVASAPPSAPSSDMDM
DEDVPQEYVCPLTLEVMIDPVVCEDGHSYERGGIEAWLRNHDTSPMSNAH
LNSKMVVPNHALRNSIEAFRRERGY*
back to top

mRNA from alignment at L-elsbetiae_contig9569:2708..6626-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9569.18551.1 ID=mRNA_L-elsbetiae_contig9569.18551.1|Name=mRNA_L-elsbetiae_contig9569.18551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3919bp|location=Sequence derived from alignment at L-elsbetiae_contig9569:2708..6626- (Laminarionema elsbetiae ELsaHSoW15)
ACCAGGAAGTTCTAAAGGGCGTGGGTCGCGGCCTGGGGCCCCTGAACCGC GCCGACAAGATCTGGTGCTACGGCTTCGGGGACGAGAGCACGCGGGACGA GTCGGTGTTCTGCTTCATGGCGGACGACCAGCCGTGCGCGAACCTTGGCC AGGCGCTGGACCGCTACGCGAGCATCGCGCCGGCGGTCGCGCTCTCGGGG CCCACCTCCTTCGCGCCGCTCATCCGCAAGGCCATCGAGATCGTGCAGGA CACGGGGGAGTACCACTGCCTCGTCATCATCGCCGACGGCCAGGTCTGGT TTGGATGCCCTCTTGATGTTGTTACGGGGGGGTATATTGGGGTATTGAGT GTTTGTTGTTGAGGTTTCGATTGGAATTGGGATTTTTTGGGGGATGTGGG CTGGCTGGGTTGTTGGAGGTTTTTCTCTTAGTTTGTTTTGTCGTTTTTTT TTTTTTCTTTTTTTTCTGAGGTTCACTCGGCTGGACTGTTCGTAGGTCGT ACGTGTGGGCGGGTCGCCTGATGAAGATTTGGTGTGTACACATGCGATGG ATTCCGGGTGTGTATCTCGTGGCAATCGCAGCACTACCCAGCAGTGGTTA GATGGAGGGCCGGGGCTGTCGGGATGGGCTCTATTGGTTGGAAAGTCATT GAGACTGCTGTTGTTTTGCTCGGTGTTCAGGTTTGAGGTTCGTTTCAAGC GTACCGACCGAGCCAGGCGGCGTGTGTGCATGCGTGACTGATGGCTTTTT TATGTTTGTGCGTCTATTCTGTTTCATGCGCGCCACGTACCTCTACCTAC ATACCTTAGGTGACGAAAGAGCGCGACACGGTCAGGGCAATCCAGGACGC GAGCAACTACCCTCTCAGCATAATCATGATCGGGGTTGGGGAGGGCCCGT GGGACACGTGCAGAGAGTTCGACAACCGTCTCCCCGGAAGGTGAGGGCAC GCAAAAGAGCACCACCCCCCACACCGCACCCGCTTCCCTCTCACACGGAG ACCCCCCCAACAGTGCAAAAGAAAAGCAGGCCTTCGAGACATCGAGGGTA AATGAATGCGTCCACAGACCAACCAGCGCCGGGTAGACGAATACTTGCCT AACTACAATACTTACAGGGAATTGTTAATGTTGTAAAATTAGCCCCGCAC CACCGTTACAGAAGGGAATACCCGTGTCGCCCGCTTGCTGGGGGGTCGCT TGATCGCTTGCGCCCCCCCCCCCCCCCCCCCCGGTCTTCTCATTGTTCCA AATCTGGTGTCCTCGCCGCCGCGTTGTGGTATGAGCTAATTTAGAGATGG ATCGCGACACAACTCATGTCCCCGGCGTTGTATGTGTATGTGTGTGTGTG TATGTGTGCGTTTCGCTGTCTTCCTCGTGGCTCGTTTCGTGTGGCACCTT TTTTATTCAAGGCGGTACGACAACTTCCGCTTCGTGGAGCACAGGCGGCT CAAGTACGGGGACGCAGAGGCACTGGCGTTGTCTGCCCTCGCCGAGGTGC CAGACCAGTACCGCGCCATCCAGGCGCTTGGCATCATGGGAGGTGTGCAA GACTTGTACCGACATTGAGTGGAGGGGGGGGGGAGGGAAGGGACTCCGAA AGAGGACTCGGGCCTTTCGACCTGACTCGGGGTCTGTTTTGGTTCCAGGC TTAGCAAGATCGATGGTTGGTTAATCGATTTTGCATCATGCTGCACGCAA AGCATGATTCACACCGCCGAACAGTTTTTTTTTGTGTCGTACAACATGTA CGTGTTTGCCCACGGCTTGTTATTGTTGCTGTGGTTGTTGTTGCTTTCAC TCGCCCGCTCCAACACTCCGCGCACCCCCCACCCCGGACCCGTGCTCACG CACCGCGTCTCTCCTTGTGTTTGTTTTGTGCCGCATGACACAAAATTATA ATTATAATATTTTCACCATATGTACTACACCCGTCGGGGAGAGAAGCTCC CGGTGTTCCTGGGCGTGCCTCGTCCTCTGTGGCCGCCTCGGTTGCGGTTG GAGGAATCGCTGGTGAGGTGCCTGGCATGGCCCCGATGCAGGCGACCATG AACGTGCCCATGGTGGCGAGCGCTCCCCCGAGCGCCCCGTCTTCTGACAT GGACATGGACGAGGACGTTCCTCAGGAGTACGTGTGCCCTCTCACTCTCG AGGTGCGCGCGTGTAGTTGGTCAGAGTTTTAGGGGAATGGAGGCGAGACT GCAGAGGTTTTCGCGAATATATATGGAATATTTTTCCAGTGCGTGCATGA TGAAGTTAGCAATGATCCCGCAACTTCCCGATTCTGCTCTACATACAGCG TGTAGAGTGGTATCGTATCGTTTTGTACCTAAATACACAAAAAATGTCCC GACTGTTTCAACAGCTCATTGCTACGAACGGTGGGATTCCACCGTTAAGC CCTCGACCTCTGACCAATATGCACTGCCCCTCCCCTCCCCCTCTCTCGAT GCCCCCAAAAGTCTACTTCTTTTTGGGTCCACACGACCATCGTTTAACAC TGGGGTGTCCTAGCTGTTCCCATCCTACAACGTAGTCACTCTACTGATCG ATATCACGTATTTGCCGTTTGGTTTATAAACAGGCATTCTTGGCAGCCCC ACCCGAATAACTGGCACGAAGTAGTTACTCTTTGCGACCCCTTCGAGTTT CGCTCTTTTTCGACCCCATCGTGCTTTGCTCCGCTTCATGCCACGATTCT CCCCTCTAATTTGCAGGTGATGATTGACCCCGTGGTCTGCGAAGACGGGC ACTCCTACGAGCGTGGTGGAATAGAGGCGTGGTTGCGGAACCACGACACC AGTCCCATGTCCAACGCGCACCTCAACAGCAAGATGGTGGTGCCCAACCA CGCTCTTCGCAACAGTATTGAGGCGTTCCGCAGGGAGCGGGGGTACTAAA TTAGCATGCGTGGTGTTGCCACGGGCGTGTATGTATGGTCCATGTACCAG AGGACCAGCGCGCAGATGCTGGTCTAGGGGTGTGAAAGCGATTCTTGTGT GCAGGGAATCGATGGATTTTTTCTTGATGGCTCCCGCGCCCGCGAGAAGC AGGCCGACACCTTGGATAGTGTTTCATGGCAAGTGTTTATTGCTTGTGGC CAGGCGATCAATGCCAACGCACGTTGCTCGAAGCCTGATGGGCACGCCCA AGGTGCTGTTCTCGCCGCGAGGCTAGGCTTCGTTGTCTGTACGAGTAATG TAGCTCTGATATTGTAGTTTGTCGAATCCCTTGTAGTACATACAATTGGA GCACCAGTAGCGTGGGTCCGAACGAGTAGTTGTGTGTCTTGCTGTTTTCT CTAATGGAGTTGGCACTCGTGCACGGCGGGTGTCCGTACATGCACGAACG GCATGGACGGCGGCGTGCCTTGACCCAAAGTCCCCCGTGCTGTGGTGGGC TTGGTTTTATTTTTACAGTTGGCCTAGGGTTTGCAGGTTACCCTAGGCTG CTTCCTTGTTTTATTTTGTAGTTATCAGGTGCATCACCGGCGAAGAAAAA ACAAAGCGTGTGTGTGTATCTATAAGCCTGAGCTTTGCTAAGCAGTAGTG GTGGCTGCTCGAAGCAGGAACCCACGTACGCGCGTCAAAGTTCTGGTGCA TCGAGCTGGAAGCTTTTGCTGTGATCGTAAAATCACTAGATGAAGACAGG TGTTCAAAAACGATCTGCTTGGCGCAAGGTGTGTCAAATAGAAAGACCAA GCAGTATAAAAGCACAGAAATGTGTGTCGCTGGCGAAGAAAAAACAAAGT GTTTGTAAGGCCATTTCTTAAGGTTGTTATTTTTCGAATTTTATTTGGAA AGGGAGGGTCGATTATTTCCCTCGGAAGGATTTGCAAGACAAATAATAAG CTGAGCCAAGAGGCCTTCTTACGGCTTGTGGAGCATTTTTTTTTCGTGGG GGAAAAAATGCTATTGTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9569:2708..6626-

>mRNA_L-elsbetiae_contig9569.18551.1 ID=mRNA_L-elsbetiae_contig9569.18551.1|Name=mRNA_L-elsbetiae_contig9569.18551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig9569:2708..6626- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGACGACCAGCCGTGCGCGAACCTTGGCCAGGCGCTGGACCGCTA
CGCGAGCATCGCGCCGGCGGTCGCGCTCTCGGGGCCCACCTCCTTCGCGC
CGCTCATCCGCAAGGCCATCGAGATCGTGCAGGACACGGGGGAGTACCAC
TGCCTCGTCATCATCGCCGACGGCCAGATGGCGGACGACCAGCCGTGCGC
GAACCTTGGCCAGGCGCTGGACCGCTACGCGAGCATCGCGCCGGCGGTCG
CGCTCTCGGGGCCCACCTCCTTCGCGCCGCTCATCCGCAAGGCCATCGAG
ATCGTGCAGGACACGGGGGAGTACCACTGCCTCGTCATCATCGCCGACGG
CCAGGTGACGAAAGAGCGCGACACGGTCAGGGCAATCCAGGACGCGAGCA
ACTACCCTCTCAGCATAATCATGATCGGGGTTGGGGAGGGCCCGTGGGAC
ACGTGCAGAGAGTTCGACAACCGTCTCCCCGGAAGGTGACGAAAGAGCGC
GACACGGTCAGGGCAATCCAGGACGCGAGCAACTACCCTCTCAGCATAAT
CATGATCGGGGTTGGGGAGGGCCCGTGGGACACGTGCAGAGAGTTCGACA
ACCGTCTCCCCGGAAGGCGGTACGACAACTTCCGCTTCGTGGAGCACAGG
CGGCTCAAGTACGGGGACGCAGAGGCACTGGCGTTGTCTGCCCTCGCCGA
GGTGCCAGACCAGTACCGCGCCATCCAGGCGCTTGGCATCATGGGAGGCG
GTACGACAACTTCCGCTTCGTGGAGCACAGGCGGCTCAAGTACGGGGACG
CAGAGGCACTGGCGTTGTCTGCCCTCGCCGAGGTGCCAGACCAGTACCGC
GCCATCCAGGCGCTTGGCATCATGGGAGCTCCCGGTGTTCCTGGGCGTGC
CTCGTCCTCTGTGGCCGCCTCGGTTGCGGTTGGAGGAATCGCTGGTGAGG
TGCCTGGCATGGCCCCGATGCAGGCGACCATGAACGTGCCCATGGTGGCG
AGCGCTCCCCCGAGCGCCCCGTCTTCTGACATGGACATGGACGAGGACGT
TCCTCAGGAGTACGTGTGCCCTCTCACTCTCGAGCTCCCGGTGTTCCTGG
GCGTGCCTCGTCCTCTGTGGCCGCCTCGGTTGCGGTTGGAGGAATCGCTG
GTGAGGTGCCTGGCATGGCCCCGATGCAGGCGACCATGAACGTGCCCATG
GTGGCGAGCGCTCCCCCGAGCGCCCCGTCTTCTGACATGGACATGGACGA
GGACGTTCCTCAGGAGTACGTGTGCCCTCTCACTCTCGAGGTGATGATTG
ACCCCGTGGTCTGCGAAGACGGGCACTCCTACGAGCGTGGTGGAATAGAG
GCGTGGTTGCGGAACCACGACACCAGTCCCATGTCCAACGCGCACCTCAA
CAGCAAGATGGTGGTGCCCAACCACGCTCTTCGCAACAGTATTGAGGCGT
TCCGCAGGGAGCGGGGGTACTAAGTGATGATTGACCCCGTGGTCTGCGAA
GACGGGCACTCCTACGAGCGTGGTGGAATAGAGGCGTGGTTGCGGAACCA
CGACACCAGTCCCATGTCCAACGCGCACCTCAACAGCAAGATGGTGGTGC
CCAACCACGCTCTTCGCAACAGTATTGAGGCGTTCCGCAGGGAGCGGGGG
TACTAA
back to top