mRNA_L-elsbetiae_contig956.18546.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig956.18546.1
Unique NamemRNA_L-elsbetiae_contig956.18546.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig956.18546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig956contigL-elsbetiae_contig956:27878..28961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig956.18546.1prot_L-elsbetiae_contig956.18546.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig956 27878..28961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817022.5900013-CDS-L-elsbetiae_contig956:27877..279681622817022.5900013-CDS-L-elsbetiae_contig956:27877..27968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 27878..27968 -
1691683989.4303489-CDS-L-elsbetiae_contig956:27877..279681691683989.4303489-CDS-L-elsbetiae_contig956:27877..27968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 27878..27968 -
1622817022.5998657-CDS-L-elsbetiae_contig956:28477..286141622817022.5998657-CDS-L-elsbetiae_contig956:28477..28614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 28478..28614 -
1691683989.441155-CDS-L-elsbetiae_contig956:28477..286141691683989.441155-CDS-L-elsbetiae_contig956:28477..28614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 28478..28614 -
1622817022.6117477-CDS-L-elsbetiae_contig956:28889..289611622817022.6117477-CDS-L-elsbetiae_contig956:28889..28961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 28890..28961 -
1691683989.451046-CDS-L-elsbetiae_contig956:28889..289611691683989.451046-CDS-L-elsbetiae_contig956:28889..28961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 28890..28961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig956.18546.1

>prot_L-elsbetiae_contig956.18546.1 ID=prot_L-elsbetiae_contig956.18546.1|Name=mRNA_L-elsbetiae_contig956.18546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
QHLRPGADTGIVFSRRIVSINRRQDGSANVTTEAVHPFHAFEKIQYQLDW
TPTPKKRLKRRAYPHHSRDRRLELDMSMCGEDKTLAQYLDPLNIELRDG*
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mRNA from alignment at L-elsbetiae_contig956:27878..28961-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig956.18546.1 ID=mRNA_L-elsbetiae_contig956.18546.1|Name=mRNA_L-elsbetiae_contig956.18546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1084bp|location=Sequence derived from alignment at L-elsbetiae_contig956:27878..28961- (Laminarionema elsbetiae ELsaHSoW15)
CAGCATCTTCGTCCTGGCGCGGATACAGGAATCGTCTTTTCTAGGCGCAT
TGTATCGATAAACAGACGCCAGGTAATGTTTCCAGCGGTGAAACCTTGTC
GGGGGTCAGCTTTTGCCCGATAGTGGAGCCCAAATCTATCTATGTAGTAG
CATCGTGAGAAATATGCCAATCCCGATATGCTTCAACCAGGGCGAGTGAC
CCCTACAGACAGGAGTATTCTGTTGCAAATGAACCTGGCTGCATTTGGAC
GCATAATGGCGGCAAGTTCCACAGAAAAGTATTTCCCAGGTACCTAAAAA
TGTCTGCGGGTTCTCCGTGTCAACTCTTCGCTTCTTCCGTTGCGCAGGAC
GGTTCTGCCAACGTGACGACAGAGGCAGTGCACCCTTTCCATGCCTTCGA
AAAGATCCAGTACCAGCTCGATTGGACCCCAACCCCGAAGAAACGGCTGA
AACGGCGAGCATATCCACACCATAGTCGTGACAGGTAGGCGACGAAGTCT
GTAGGATGATGTTGAGGACTAGCTTGCCTTTTGTCGCTGCACTTTGTTTC
TCCAGCGACGACGAACACACATGGATCTGATGCCGCTTCGTTCGATTTTC
TGTGTGCAAGACAAGACGTCGTTCGATGGATCGATTATGTGCCGGATTGG
ATACATTCATTGGCATTCCACCTGTTTCTTTAGCGGCGTCGAGGCTACCC
TGCTTTGGTTGCACGGGACCCGTCGACGTTCTGGACCGGAGAGAGAGAGA
GAGCTGATGTGATCAGCAGCTTACACCACCACCACCACCAGCAACAACAG
CACCAGCAACATCAGCAACAACAGCACCACCACCACCACCACCACCACCA
CCACCAACAACGACAACAACAACAACAACAACAGCTCAGCAGCAGCGGTA
ACAGCAACAGCATAGACGCAACTTTTAAAATTCGATGCGTGTTCATCATC
ATTTTTAACGCCATAAAATCACCTCTCTCGGCGTCGTTGTAAGGCGCCTG
GAACTAGATATGTCGATGTGCGGAGAAGACAAGACCTTGGCCCAATACCT
CGACCCGTTAAACATCGAGCTTCGCGACGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig956:27878..28961-

>mRNA_L-elsbetiae_contig956.18546.1 ID=mRNA_L-elsbetiae_contig956.18546.1|Name=mRNA_L-elsbetiae_contig956.18546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig956:27878..28961- (Laminarionema elsbetiae ELsaHSoW15)
CAGCATCTTCGTCCTGGCGCGGATACAGGAATCGTCTTTTCTAGGCGCAT
TGTATCGATAAACAGACGCCAGCAGCATCTTCGTCCTGGCGCGGATACAG
GAATCGTCTTTTCTAGGCGCATTGTATCGATAAACAGACGCCAGGACGGT
TCTGCCAACGTGACGACAGAGGCAGTGCACCCTTTCCATGCCTTCGAAAA
GATCCAGTACCAGCTCGATTGGACCCCAACCCCGAAGAAACGGCTGAAAC
GGCGAGCATATCCACACCATAGTCGTGACAGGACGGTTCTGCCAACGTGA
CGACAGAGGCAGTGCACCCTTTCCATGCCTTCGAAAAGATCCAGTACCAG
CTCGATTGGACCCCAACCCCGAAGAAACGGCTGAAACGGCGAGCATATCC
ACACCATAGTCGTGACAGGCGCCTGGAACTAGATATGTCGATGTGCGGAG
AAGACAAGACCTTGGCCCAATACCTCGACCCGTTAAACATCGAGCTTCGC
GACGGGTGAGCGCCTGGAACTAGATATGTCGATGTGCGGAGAAGACAAGA
CCTTGGCCCAATACCTCGACCCGTTAAACATCGAGCTTCGCGACGGGTGA
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