mRNA_L-elsbetiae_contig956.18544.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig956.18544.1
Unique NamemRNA_L-elsbetiae_contig956.18544.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig956.18544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig956contigL-elsbetiae_contig956:20285..22827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig956.18544.1prot_L-elsbetiae_contig956.18544.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig956 20285..22827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817022.4749975-CDS-L-elsbetiae_contig956:20284..203561622817022.4749975-CDS-L-elsbetiae_contig956:20284..20356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 20285..20356 -
1691683989.3539796-CDS-L-elsbetiae_contig956:20284..203561691683989.3539796-CDS-L-elsbetiae_contig956:20284..20356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 20285..20356 -
1622817022.4861372-CDS-L-elsbetiae_contig956:21162..212961622817022.4861372-CDS-L-elsbetiae_contig956:21162..21296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 21163..21296 -
1691683989.368947-CDS-L-elsbetiae_contig956:21162..212961691683989.368947-CDS-L-elsbetiae_contig956:21162..21296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 21163..21296 -
1622817022.497297-CDS-L-elsbetiae_contig956:22727..228271622817022.497297-CDS-L-elsbetiae_contig956:22727..22827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 22728..22827 -
1691683989.385659-CDS-L-elsbetiae_contig956:22727..228271691683989.385659-CDS-L-elsbetiae_contig956:22727..22827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 22728..22827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig956.18544.1

>prot_L-elsbetiae_contig956.18544.1 ID=prot_L-elsbetiae_contig956.18544.1|Name=mRNA_L-elsbetiae_contig956.18544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
GTAGLNFSVNAYAGAGAEYKKNSNADVGTWDLFAEANWGYSYNVYNNLYD
PTMELRATFTPTCYLRFSFLKSLHLTSTVSRSPYRGVLFYAASDALFRAT
MT
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mRNA from alignment at L-elsbetiae_contig956:20285..22827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig956.18544.1 ID=mRNA_L-elsbetiae_contig956.18544.1|Name=mRNA_L-elsbetiae_contig956.18544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2543bp|location=Sequence derived from alignment at L-elsbetiae_contig956:20285..22827- (Laminarionema elsbetiae ELsaHSoW15)
GGTACTGCTGGCCTGAACTTTTCCGTCAATGCCTATGCCGGGGCCGGCGC
GGAGTATAAAAAGAACAGCAACGCGGATGTGGGGACATGGGACCTGTTTG
GTACGTTCTTCGCATCACTTAACCCTTTTGGGTCTTGAAGTGTGCTTTTA
TTGATCACAGAAGTTGATCATTGGAAAGCCCCTCTGCGGACCGGGCTTGT
CGGTACATCAGGGGTGATAATACAGACAGCGCCAGGTGACAAGAAACGTG
AAATATGGGCTGAGGCTCTATTTCTTATTAATTCGCCACTGTCGAGCGTA
GGGGTTTGTGTAGGGTTTAGTGTAGGATCCATGACTGAGGTGTGTTTCTT
AATCCAAATTTCTTGTTTTTCGCGGAAAACCCAGCCTCAAGTTCTCATGA
GAGTATTTCTTGTCAGCGGGCGCTGCCTGTATGAACCCCCTGAAATGGCC
ACGCACGCAGTCGTGCAGCAGCAGCAGCAGCAGCATCAGTGGAGTCTATA
TGCTACAGAGGTTTCATCTCCACAAACCAAATGCTTGCTGCTGCCGCAGC
CACTGCTGCTGCTGGGTATTATTATATTTACTTACTACTACAGCAGTGTG
GCGTCGTCTGTCTCACACACCACGACATCAATAGCACAAACCAACCAAAC
CCGTCCACGCACACACCATAACTACACATGCATCACCATAAATACCTAGA
CTCGCCTTCTACGTTAACACCAGCAATCAATCTGTATAGTCTAGATCAAT
CTCCTCGCGGCCTTTGGCTATTTACGATTTGACTGAGCGCTATGTAGTAA
GGCATGTAGTAAGGCAGGACTGTCAGAGAAGTAGAGAAATCCGCTACCGT
AGGGGACTTCTCTATACAATACCAAAAATTGAGAAAAATGGTCATCTTCT
TGAGTAGTCAAAACCTAGATGATTCCCAGGTTGTCCTCTACCTGAGACCA
CCCAGCCAATGACTATGACATAAATTAACTGTTTAGTTATGTCATAGTCA
TTGCACCCAGCCTTGAGTGAGAACTCGAGAACTACCGGTGGCATTTTGAA
GGCCCTGGAGCTATTCTAGTGTCCCACCGAACATCTGAAGCCTGTTGCCG
GCTCGCGACATCGCCGCGGTGCGTGTTCAGATTTTGGCGGGGACTTCCGG
AGAGAAAAATCTCTTCTAAACAGAGAAGTTTGAAAGTAAAACAGTTAATC
AAAAATGGAACCTAACCCGCATTGGAGACGGGGCTCCCGTGAGATTCGAC
CGGTATTCCATATAGTGCCGTAATATTGGTCCAACCTGGTAAAAAAACAC
CTCAAATGTGGAAGAAAGTTTATTTCTGTGTGTGCGGCAGGTGCGGCCAC
AAATGTGCACAGTCCCAGGCTGCTCGACCTGCGGCAGGTCGAGGAGCATA
GTCTCAGAGCAACCAACCAAACAAGCACCTTTATCCACACCGTAGCCCTC
AATTAACACCCATAAACTTTCGCTTAACAAGCGCCATCCTGTTTTAACCC
GACCGTTCGTCCGCGCTTCATCGGTGAACAGCGGAAGCGAACTGGGGATA
TTCGTACAATGTGTACAACAATTTGTACGACCCGACCATGGAACTGAGGG
CCACTTTTACTCCGACCTGTTACCTGCGATTCTCCTTCTTGAAGTCGCTC
CATCTGACCTCGACGGTGAGCAGTTCGACTTGCGAAATAAGGCTTTCAGC
GCAAAGGCTCTGAATTTACCCGGAAAAAGTAATTTTAACACTGCGTCATT
GGGGTAGCCCGCAGATCGTTTCCCGTACGATGGGGCATGATTTGTCTCCG
ACCCAAGAGCAACGCTTATGTAGATAGACGGCTGTGTTGTCCGCTATGAA
GCGTGCAACTTCGCGAACATTGTACTCGGAATGTCGCATCCGCTACGTTT
CCCACCGGTACCGAAATTGGGAGCTGTTCGTCAACACATTTTTCACCTTT
TTCGTAGCTTTGCAAAGAAAGGTAATCTGTTTTCGCGGATCAAGCAGGTA
GCTGGCAACGCTTTTCGATAAGCATCTTGTTAGCTTGTGCTGTTGCATAG
GCCAGGTATTAGAAGTCCTGGATGTGTTACTGGACGTGGTACCTCATGTG
TTGTGTTCTTGTCGTGGGGCGTGCACGTTCTCGTATCTCGCAGAGATGGA
GCACTGATGGTCGTGGGACCAGTGTGTATGGAGACCCTTGATGTTGTTAA
GTGCCGCTTCTGGGACTTGCACCTGCTACATACTGCGAGCCATGTTCAGG
CTGCAGCTTAGGTGTGACCAAGGTAGAAAGGTCGGAGCTGAGGAGTGAGA
GAGCTGGGGGCTTTCTCCCTCTGATCTCGCTACAACTACAGTAGTACAAT
CAAAAAATTTAGTCGCTCGTTGAAACTGTTCAGTACATTATCAACCGTCA
CAAGCAACAAGCAGCAGTACTTGATCTGCTGTACGCATCCTCCAACACAC
TGCGCTGTATTCCAACACCAGGTTTCCCGATCTCCATACCGGGGGGTATT
GTTCTACGCTGCGTCCGACGCGCTATTTCGAGCTACCATGACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig956:20285..22827-

>mRNA_L-elsbetiae_contig956.18544.1 ID=mRNA_L-elsbetiae_contig956.18544.1|Name=mRNA_L-elsbetiae_contig956.18544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig956:20285..22827- (Laminarionema elsbetiae ELsaHSoW15)
GGTACTGCTGGCCTGAACTTTTCCGTCAATGCCTATGCCGGGGCCGGCGC
GGAGTATAAAAAGAACAGCAACGCGGATGTGGGGACATGGGACCTGTTTG
GGTACTGCTGGCCTGAACTTTTCCGTCAATGCCTATGCCGGGGCCGGCGC
GGAGTATAAAAAGAACAGCAACGCGGATGTGGGGACATGGGACCTGTTTG
CGGAAGCGAACTGGGGATATTCGTACAATGTGTACAACAATTTGTACGAC
CCGACCATGGAACTGAGGGCCACTTTTACTCCGACCTGTTACCTGCGATT
CTCCTTCTTGAAGTCGCTCCATCTGACCTCGACGCGGAAGCGAACTGGGG
ATATTCGTACAATGTGTACAACAATTTGTACGACCCGACCATGGAACTGA
GGGCCACTTTTACTCCGACCTGTTACCTGCGATTCTCCTTCTTGAAGTCG
CTCCATCTGACCTCGACGGTTTCCCGATCTCCATACCGGGGGGTATTGTT
CTACGCTGCGTCCGACGCGCTATTTCGAGCTACCATGACCGTTTCCCGAT
CTCCATACCGGGGGGTATTGTTCTACGCTGCGTCCGACGCGCTATTTCGA
GCTACCATGACC
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