mRNA_L-elsbetiae_contig9548.18535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9548.18535.1
Unique NamemRNA_L-elsbetiae_contig9548.18535.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.930e-56
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDLS 295
            VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPA+MMEIGE+SVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCR VDLS
Sbjct:  240 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPADMMEIGEISVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRMVDLS 337          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A835Z4V1_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.730e-36
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAA-----KDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDLS 295
            V  DL  H+H+FMASLVE SNQ +GKTV+YLP E+ ++     AA      DKDLVQHLES+VIHWTRQIKDV++N+D AL AE LGPLEE++FWR RTVDLS
Sbjct:   62 VTKDLVSHYHKFMASLVEASNQVEGKTVLYLPRELEDMATYDAAAIAARATDKDLVQHLESVVIHWTRQIKDVISNYDMALDAETLGPLEEVQFWRSRTVDLS 164          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A482UHI3_9ARCH (DHC_N1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UHI3_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 2.650e-30
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNAL-SAEILGPLEEIEFWRCRTVDLS 295
            V+ D  G  HRFMAS+VE + Q +GKTV+YLPAE +     +VAA DKDLVQ LE+ VIHWTRQIK+VV+N DNA  S+E  GPLEEIEFW  RT DLS
Sbjct:  164 VRKDFVGQMHRFMASVVETNFQLQGKTVLYLPAESVSADPAAVAA-DKDLVQRLEATVIHWTRQIKEVVSNQDNATTSSETGGPLEEIEFWSSRTQDLS 261          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A2R5GWD4_9STRA (Dynein heavy chain 2, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWD4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.670e-30
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDLS 295
            V+ D  G  H+F+ASL E +NQ+KGKT++Y+P E ++  E   AA+DKDLVQ LES +I WTRQIK+VVNN D A + E  GPLEEI+FWR RT DLS
Sbjct:  258 VRKDFAGQLHKFVASLTETTNQSKGKTILYIPLEAVDDPEA--AARDKDLVQRLESTMIRWTRQIKEVVNNQDMAANTETSGPLEEIQFWRSRTQDLS 353          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A388K173_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K173_CHABU)

HSP 1 Score: 120 bits (300), Expect = 1.800e-29
Identity = 60/97 (61.86%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    5 KNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDLS 295
            K +  G  HRFMASL E +   KGKTV+Y+P E +E    S   KDKDLVQ LES +IHWTRQIK+VVNN DNA   E  GPL EIEFWR R+VDLS
Sbjct:  284 KKEFMGQLHRFMASLTECTYHVKGKTVLYIPQEDLESMTESRLKKDKDLVQRLESALIHWTRQIKEVVNNQDNAELGEEAGPLAEIEFWRSRSVDLS 380          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A2P6NRV5_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NRV5_9EUKA)

HSP 1 Score: 117 bits (294), Expect = 1.160e-28
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDLS 295
            VK + TGH  +FMASL E++ Q++G TV+Y+P E   + + ++AA +KDLV  LESI+IHWTRQIK+VV N DNA   E  GPL EIEFWR RTVDLS
Sbjct:  153 VKKEFTGHAQKFMASLTEVAFQSQGSTVLYIPNE--NLTDPNLAANEKDLVHRLESILIHWTRQIKEVVTNQDNAELVENAGPLSEIEFWRLRTVDLS 248          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A0G4IMY8_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMY8_PLABS)

HSP 1 Score: 116 bits (290), Expect = 4.030e-28
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDL 292
            V+ D +G  H+FMA+L E  N +KG T++Y+P E  ++ +V  A  DKDL+Q LES +IHWTRQIK+VV N D +   E  GPLEEIEFWR RTVDL
Sbjct:  205 VRKDFSGQLHKFMANLTETVNHSKGSTILYMPDE--DLSDVEAAVADKDLIQRLESTLIHWTRQIKEVVTNQDTSQHVEESGPLEEIEFWRSRTVDL 299          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A5B8MZU6_9CHLO (Heavy chain of dynein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZU6_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 5.490e-28
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDLS 295
            VK   TG  H+FMASL E++ + KGKTV+Y+P E       +   KDKDL+Q LESI+IHWTRQ+K+VVNN DN+   E  GPL EIEFWR R+VDL 
Sbjct:  153 VKKQFTGQLHKFMASLTEVTYERKGKTVLYIPQE------TTGKKKDKDLIQRLESILIHWTRQVKEVVNNQDNSELGEDAGPLAEIEFWRSRSVDLG 244          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A8J6CA31_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CA31_DIALT)

HSP 1 Score: 115 bits (288), Expect = 7.500e-28
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDLS 295
            +K + +G  H+FMASL E + +AKGKT +Y+P E +  G+   A+++KDLVQ LES +IHWTRQIKDVVN  D+   A+ +GPL EI+FWR RT++L 
Sbjct:  183 IKKEFSGQLHKFMASLTETTFEAKGKTTLYIPEEAL--GDADAASREKDLVQRLESTLIHWTRQIKDVVNRQDDGEQADDVGPLAEIQFWRSRTINLG 278          
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Match: A0A250X4L5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4L5_9CHLO)

HSP 1 Score: 115 bits (288), Expect = 7.500e-28
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 VKNDLTGHFHRFMASLVEMSNQAKGKTVMYLPAEMMEIGEVSVAAKDKDLVQHLESIVIHWTRQIKDVVNNHDNALSAEILGPLEEIEFWRCRTVDLS 295
            V+ D T   H+FMA+L E   +A+GKT++Y+P E  + G+   +AK KDLVQ LESI+IHWTRQIK+VVN  D+  S+E  GPL EIEFWR R+VDLS
Sbjct:  169 VRADFTAQLHKFMATLTETVYEARGKTILYIPQE--DYGDAKSSAKQKDLVQRLESIIIHWTRQIKEVVNQQDSQDSSEHSGPLSEIEFWRERSVDLS 264          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9548.18535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX3_ECTSI1.930e-5696.94Axonemal 1-beta dynein heavy chain dynein heavy ch... [more]
A0A835Z4V1_9STRA1.730e-3665.05Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482UHI3_9ARCH2.650e-3063.64DHC_N1 domain-containing protein n=1 Tax=archaeon ... [more]
A0A2R5GWD4_9STRA9.670e-3059.18Dynein heavy chain 2, axonemal n=1 Tax=Hondaea fer... [more]
A0A388K173_CHABU1.800e-2961.86Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2P6NRV5_9EUKA1.160e-2859.18Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A0G4IMY8_PLABS4.030e-2855.67Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A5B8MZU6_9CHLO5.490e-2857.14Heavy chain of dynein n=1 Tax=Chloropicon primus T... [more]
A0A8J6CA31_DIALT7.500e-2853.06Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A250X4L5_9CHLO7.500e-2857.14Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9548contigL-elsbetiae_contig9548:3310..5662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size298
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9548.18535.1prot_L-elsbetiae_contig9548.18535.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9548 3310..5661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817021.655295-CDS-L-elsbetiae_contig9548:3309..33761622817021.655295-CDS-L-elsbetiae_contig9548:3309..3376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9548 3310..3376 +
1691683988.7229023-CDS-L-elsbetiae_contig9548:3309..33761691683988.7229023-CDS-L-elsbetiae_contig9548:3309..3376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9548 3310..3376 +
1622817021.6667848-CDS-L-elsbetiae_contig9548:4145..42231622817021.6667848-CDS-L-elsbetiae_contig9548:4145..4223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9548 4146..4223 +
1691683988.7356787-CDS-L-elsbetiae_contig9548:4145..42231691683988.7356787-CDS-L-elsbetiae_contig9548:4145..4223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9548 4146..4223 +
1622817021.6799295-CDS-L-elsbetiae_contig9548:4901..50211622817021.6799295-CDS-L-elsbetiae_contig9548:4901..5021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9548 4902..5021 +
1691683988.7485723-CDS-L-elsbetiae_contig9548:4901..50211691683988.7485723-CDS-L-elsbetiae_contig9548:4901..5021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9548 4902..5021 +
1622817021.690976-CDS-L-elsbetiae_contig9548:5629..56611622817021.690976-CDS-L-elsbetiae_contig9548:5629..5661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9548 5630..5661 +
1691683988.762417-CDS-L-elsbetiae_contig9548:5629..56611691683988.762417-CDS-L-elsbetiae_contig9548:5629..5661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9548 5630..5661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9548.18535.1

>prot_L-elsbetiae_contig9548.18535.1 ID=prot_L-elsbetiae_contig9548.18535.1|Name=mRNA_L-elsbetiae_contig9548.18535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
RQERPHRTLSPLHGLAGRNVQPGQRQDGHVFAGGDDGNRRGVCGRERQGP
GAAPGEHCHPLDAADQRRREQPRQRPERGDSRPPRGDRVLALPNGGPER
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mRNA from alignment at L-elsbetiae_contig9548:3310..5662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9548.18535.1 ID=mRNA_L-elsbetiae_contig9548.18535.1|Name=mRNA_L-elsbetiae_contig9548.18535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2353bp|location=Sequence derived from alignment at L-elsbetiae_contig9548:3310..5662+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCAAGAACGACCTCACCGGACACTTTCACCGCTTCATGGCCTCGCTGG TCGAAATGTCCAACCAGGTGCGTGGGGAGATTTCCCAAAAGTCAGCAGAA ACGACCAGGATGGTAGGGTTCAGTTGCTGCAACGGGGAATGGCAGGAACG ACAGTTGGTTTCGATGGTGAGGCTCTTCTGGGTGAGAAATGGCACAGCGT ATCTTGGGGCAAAAGTGGTGTGTTCTCTCAACCCCCGGTCCCAGCGTGGA AAAATGCTCATGCCAAGGTTAAGAATATGCGGCAGTAGAAGTAGACAGAA AATACGTAACCAACAAGACCAGCGAGGTTTTTCAGTCGGATTTTGGTGGC CGCCGCCAGCAAGATCTGGCTACAGCACGTGCCTTGTACGGCGCGTTGCC CTCATACACGTCGGCGTTTAATAGCTGTTGCGCTGCCATGGTTGTAACCT GCGCGGTTATGTCCAGCCAAGCGAGTGGCTCCATCCTACGGCCGACGGCT TAGGGTATGGTGCTGGCCAGAGCTTTAGATAATCGGTCCGTTTATCGTTT ATCCCGCACTTCTACAGGGATCTACCCTTTAAAGCCTGCCCGCGAAGCGT TTTCGTACATCATCAATGTCGCATGGTTGGCTGCCCCAAGATGTAGTGAA GTCTTGCAGAATACGTGTGGTGCATCCTTTCGATCATCTATAGATATTCC CGCGCCCCCGCATGAGGCACATGACTGCTTCTAACCGTTTCAACTTTGGC TCGTTCACCGCCGAAACATTTTCCCGCTTAGGTGAACGATACATTTCCCC CCCTAACCTTTGATGCCCCCTCTCGAAATAATTCAGGCCAAAGGCAAGAC GGTCATGTATTTGCCGGCGGAGATGATGGAAATCGGCGAGGTGTCTGTGG CCGCGAAAGACAAGGCGAGCTAAGACGGTGCACATATCGCGGGGGGGGGT GGGGCCCATGAAATAAGTTGTTACGTCAAGTCGATTGACTATCTGGATAC AATACGAGGCTTTTCAGTCCACCAGCTCCTCGCTGCTGCTGGTGGAGTGC AACGCTAAATGTAACAACACTGAGTCCATTGCTTTCAAGATATTATACGA ACTCAATCGATCTAGCCCACATCTTCACCCAAACCTCAGACCCAAGCCCC AAGATCAAACGCTCACGCGAATGTTCTTTTATTCGGCTTTGGGCACGCGA ACGCTGGGACATACCGACAGAAACCCACGAAGCTTACTCTCATCGCTGAA GTTATGGTAACGTCGGCGAAGTGCAGGGGCCGCATCCCAAACTTTTGAGT CGGCGTATTTCCCAGGAAACCCACACGATTTATAGTCATGACCGATGTGC TTTCACGGCATATTCGACCGGGGGGGCTTCACTCACGACTGCAGGTTGTG AGACGTTTCGCTGATTGCTTCATCCATCCGAGCTGCGAGTCTTGAACGCC CCCCACCAGCTCGGCCAACCCACCGTCCACCACTTTGCCACTCCTGCTCC GCCTAGCTCCGACCCCTGCCTGGGCGCTGCCACGTCGACCGCAGCCATCA TCACACCTATTGATAACACCTCGCGTAAATCTCGATCGGCAGGACCTGGT GCAGCACCTGGAGAGCATTGTCATCCACTGGACGCGGCAGATCAAAGACG TCGTGAACAACCACGACAACGCCCTGAGCGCGGAGATTCTCGGCCCCCTC GAGGAGATCGAGGTGCGTACGGAGGTGCTGTACTCTGGACAGTCGCATCA GATCAAAGAGACTGCGCGTGTGTGTAAAGTGTGTAATATTTGTCCCGGGG CTCTTTCTCTACAACATGCTATGCTAGTTCTGCCTTCAAACATGCCCCCC CCAACATGGTTTCGGGGTGGCGAGGTTTGGTTTTTGCTCTTCGATGTCTC TACATAAAGGAAACCGGGGGTGCTACTGTACGTTCTTTCTGTTCAAGTTC TCTGGAAACTTCGGGGGAGCGGTTTACGGTTCCGTTAAAGTTCTCAGATG CGAGTATGTATGTATGAACAAGAAGTAGAACCAAGGGCATGTTTGTGTGA GTTAGTTCCCTGCAAGGCCCTCGTTTGACGTCCCGAAATCCCAACCCACA TCTCCTCACCCGGGGCCCCTTCACTGCTGCCTCAGGCTATATATTGTTTC CATCGCTTCTTTATCAGGCCAGCCAATCAATCAACCATCAGCAACACTCC CTGATTTCAAAGCTGGCTCGTCTTCACAATTTCAATATCGTTGGTTTGTT TCCTTTGCGGGCACTTTTGTTGTTTGTGTGTGTTACGCATGTCGCACTCG TTCCAAATCCTACTCTTTAGTTCTGGCGTTGCCGAACGGTGGACCTGAGC GGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9548:3310..5662+

>mRNA_L-elsbetiae_contig9548.18535.1 ID=mRNA_L-elsbetiae_contig9548.18535.1|Name=mRNA_L-elsbetiae_contig9548.18535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig9548:3310..5662+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCAAGAACGACCTCACCGGACACTTTCACCGCTTCATGGCCTCGCTGG
TCGAAATGTCCAACCAGCGTCAAGAACGACCTCACCGGACACTTTCACCG
CTTCATGGCCTCGCTGGTCGAAATGTCCAACCAGGCCAAAGGCAAGACGG
TCATGTATTTGCCGGCGGAGATGATGGAAATCGGCGAGGTGTCTGTGGCC
GCGAAAGACAAGGCCAAAGGCAAGACGGTCATGTATTTGCCGGCGGAGAT
GATGGAAATCGGCGAGGTGTCTGTGGCCGCGAAAGACAAGGACCTGGTGC
AGCACCTGGAGAGCATTGTCATCCACTGGACGCGGCAGATCAAAGACGTC
GTGAACAACCACGACAACGCCCTGAGCGCGGAGATTCTCGGCCCCCTCGA
GGAGATCGAGGACCTGGTGCAGCACCTGGAGAGCATTGTCATCCACTGGA
CGCGGCAGATCAAAGACGTCGTGAACAACCACGACAACGCCCTGAGCGCG
GAGATTCTCGGCCCCCTCGAGGAGATCGAGTTCTGGCGTTGCCGAACGGT
GGACCTGAGCGGTTCTGGCGTTGCCGAACGGTGGACCTGAGCGG
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