mRNA_L-elsbetiae_contig954.18527.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig954.18527.1
Unique NamemRNA_L-elsbetiae_contig954.18527.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: D7FM38_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM38_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 1.070e-149
Identity = 208/292 (71.23%), Postives = 244/292 (83.56%), Query Frame = 2 
Query:   32 ARLPHGSKHLLFGLLIGTAYGIALSGLWRSKESVWSQATSLTKH-REAVRPKVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVPGTAAPVKLVTIFLGANDCVLAGNDQHVPLEEYKSNLRQMAAHIRAANPEARVMFITPPPIHERKWMEHRNYQAREMDRQQEVTKAYATACAEVGKEVGAKVVDTYRLMGSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPALE--GGEASMQCPHFSEIDPINPRESVLQGL 898
            A+L  G KH+  GLL GTA+G+ALS + RSK   ++ +  + K  REAVRPKV+CFGDSLTQ+GFDAERLGWL+LLAHWWERRFDVVNRG+SGYNTRWL+PL++RLFVPG   PVKLVTIFLGANDCVL GN Q+VPL+EYK NL+ MAAH+R  + EAR+M ITPPPIHERKWMEHR +QAR+MDR+QE T +YA ACAEVGKE+GAKVVD YRLMGSG +  AD YLHDGVHFTAEGNR+LFEG+++EI  S+PEL P  E  GG  SMQ PHFSE+DP NPR+SVL+GL
Sbjct:    2 AKLSPGGKHVAMGLLFGTAFGMALSAVLRSK---YTASKGVKKQQREAVRPKVICFGDSLTQFGFDAERLGWLSLLAHWWERRFDVVNRGFSGYNTRWLMPLMDRLFVPGGNTPVKLVTIFLGANDCVLPGNAQYVPLQEYKENLKLMAAHVRTVHKEARLMLITPPPIHERKWMEHRQFQARDMDRKQEATMSYAVACAEVGKEIGAKVVDAYRLMGSGAEDAADEYLHDGVHFTAEGNRRLFEGVKAEIRASFPELVPDTEEEGGVVSMQAPHFSEVDPTNPRDSVLRGL 290
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BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: A0A836CKV6_9STRA (SGNH hydrolase-type esterase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV6_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.140e-58
Identity = 108/261 (41.38%), Postives = 148/261 (56.70%), Query Frame = 2 
Query:  167 EAVRPKVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVPGTAAPVKLVTIFLGANDCVLAGNDQHVPLEEYKSNLRQMAAHIRAANPEA-----------------RVMFITPPPIHERKWMEHRNYQAREMDRQQEVTKAYATACAEVGKEVGAKVVDTYRLMGSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPALEGGEASMQCPHFSEIDPINPRESVLQGL 898
            E+  P+++ FGDS+TQYGFDAE++GWLA           V N      + R  + +++RLF  G A P  LVT+FLG ND VL G  QHVPL EY++N+  +  H+R A P+A                 +++ I P P+H  KW  HR  Q R +DR QE T  YA AC  + +++G   VD +  +GSGDQ LAD YLHDG+H +AEGN  LF  ++  IL +YP L+P        MQ P    +D  +P ES+L+ L
Sbjct:   41 ESAPPRMIAFGDSVTQYGFDAEKMGWLA----------QVCN-----VHLRLHVIMLDRLFKAGAAQPTALVTVFLGINDAVLPGEKQHVPLPEYRANMNAIVNHLRTAYPDAAKRLMVPSQCPSAPFCVQLVLIAPAPVHLGKWEAHRAKQGRPLDRSQEHTLQYARACLALARDMGVPAVDLHTALGSGDQELADKYLHDGLHLSAEGNAVLFTELQRTILAAYPHLDP----DTMKMQAPWHGHVDEDSPEESILRDL 282
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BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: UPI001ABE0209 (isoamyl acetate-hydrolyzing esterase 1 homolog n=6 Tax=Bufo TaxID=8383 RepID=UPI001ABE0209)

HSP 1 Score: 174 bits (440), Expect = 2.690e-49
Identity = 104/248 (41.94%), Postives = 146/248 (58.87%), Query Frame = 2 
Query:  179 PKVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVPG---TAAPVKLVTIFLGANDCVLAGND--QHVPLEEYKSNLRQMAAHIRAAN-PEARVMFITPPPIHERKWMEHRNYQAREMDRQQEVTKAYATACAEVGKEVGAKVVDTYRLM--GSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPALEGGEASMQCPHFSEIDPINPRESVLQGL 898
            P+V+ FGDS+TQ+ F+    GW A LA+   R+ DV+NRG SGYNTRW   ++ +L   G   +AA +  VTIF GAND  +   +  QHVPLEEY  NLR M  ++++ N  E +++ I PPPIHE  W +H   +  +++R   VT+AYA ACA+VG E GA VVD + LM  G  D T+   YL DG+H + EGN+ L   +       +P L   L  G      P+++++D  NP  S+ Q L
Sbjct:    5 PRVLLFGDSITQFAFETN--GWGATLANKLVRKCDVLNRGLSGYNTRWAKQILPKLIPDGARASAADIAAVTIFFGANDSSIREQNPQQHVPLEEYAENLRSMVQYLKSVNIKEEKIVLIAPPPIHEPSWEKHCFMKGYKLNRLNAVTEAYARACAQVGNEYGADVVDLWTLMQEGGSDYTV---YLSDGLHLSEEGNQFLESKL-------WPLLEKKL--GTLPFILPYWNDVDNNNPESSLFQNL 238
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BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: A0A0D2UC08_GOSRA (SGNH_hydro domain-containing protein n=7 Tax=Gossypium TaxID=3633 RepID=A0A0D2UC08_GOSRA)

HSP 1 Score: 174 bits (441), Expect = 4.040e-49
Identity = 106/250 (42.40%), Postives = 140/250 (56.00%), Query Frame = 2 
Query:  167 EAVRPKVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVPGTAAPVKLVTIFLGANDCVLAGND---QHVPLEEYKSNLRQMAAHIRAANPEARVMFITPPPIHERKWMEH--RNYQAREM---DRQQEVTKAYATACAEVGKEVGAKVVDTYRLMGSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPALEGGEASMQCPHFSEIDPINPRESVLQ 892
            E +RP +V FGDS+TQ  F +   GW A LA  + R+ DVV RGY GYNTRW L L++ LF  G+  P    TIFLGAND  LAG     QHVP+EEYK NLR++  H++  +P   ++ ITPPPI E   ME+    Y  + M   +R  E T  YA  C E+  E+G + ++ +  M   D      YL DG+H TAEGN  +FE    E++  + E    L+  E     PH SEID  NP ++  Q
Sbjct:   26 ETMRPNIVLFGDSITQESFRSG--GWGASLADTYSRKADVVLRGYGGYNTRWALFLLHHLFPLGSTKPPVATTIFLGANDAALAGRTSERQHVPVEEYKENLRKIVRHLKECSPTMLIVLITPPPIDEEGRMEYARETYGEKAMTLPERTNETTGVYAKGCIELAGELGVRSINLWSKMQETDGWQKK-YLRDGLHLTAEGNAVVFE----EVVKVFKEA--WLDASEMPYDFPHHSEIDGKNPEKAFQQ 266
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BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: K8Z6E0_NANGC (Isoamyl acetate-hydrolyzing esterase 1-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z6E0_NANGC)

HSP 1 Score: 176 bits (447), Expect = 4.430e-49
Identity = 94/234 (40.17%), Postives = 137/234 (58.55%), Query Frame = 2 
Query:  176 RPKVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVPGTAA--PVKLVTIFLGANDCVLAGNDQHVPLEEYKSNLRQMAAHIRAANPE----ARVMFITPPPIHERKWMEHRNYQAREMDRQQEVTKAYATACAEVGKEVGAKVVDTYRLMGSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPALEGGEASMQCPHFSEI 859
            RPK++ FGDSLTQ GF+    GW A LAH + RR D+VNRG+SGY T+W   +  RLF  G  A     L  +FLGAND  L   +QHVP+ EY+ +LR++ +H++    E     RV+ +TPPP+ E +W  H   + R +DR+ EVT+ YA A   V +E+   VVD +R +G          L DG+H +A+G+  ++E + + I  +YP+L P+    +  MQ P   E+
Sbjct:  110 RPKILLFGDSLTQRGFEGPGQGWAAGLAHAYGRRADIVNRGFSGYTTKWCALMAPRLFPAGDPAWEVPALAIVFLGANDAALPSREQHVPVHEYEQHLRRIVSHLQGRRREDGSATRVLLLTPPPVDEARWEVHCQSRGRPLDRKNEVTRLYARASKGVAREMQVPVVDLWRRLGGRSPEAVAPNLGDGLHLSAQGSVLVYEAVLTAIEENYPDLAPS----QLPMQAPEHFEL 339
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BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: A0A5M6BTK6_9TREE (SGNH_hydro domain-containing protein n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BTK6_9TREE)

HSP 1 Score: 172 bits (437), Expect = 1.740e-48
Identity = 108/271 (39.85%), Postives = 154/271 (56.83%), Query Frame = 2 
Query:  170 AVRPKVVCFGDSLTQYGFDAERLGWLAL-LAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVP------GTAAPVKLVTIFLGANDCVLAGNDQHVPLEEYKSNLRQMAAHIRAAN-----PEARVMFITPPPIHERKWMEHRNYQAR---------EMDRQQEVTKAYATACAEVGKEVGAKVVDTYRLM-----GSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPALEGGEASMQCPHFSEIDPINPR---ESVLQG 895
            A    ++ FGDSLTQ   D    G LA   A ++ RR DVVNRG+ GY + W +P+  ++F        G A  VKL+TI+LGAND  LA + QHVPLEEYKSNL ++ + I++ +     PE +++ I PPP+ E KW++ R  +           + +R  +V K YA AC +V +E G  VVD ++ +     G GD  L D YL+DG+H T+EG   LF+ + + +   YPELNP        M+ PH+S++DP +PR   E V  G
Sbjct:    5 AYTDAIMLFGDSLTQAWSD----GSLAQRTAEYYSRRLDVVNRGFGGYTSTWAIPVFEQVFATKEAREKGYAQNVKLITIWLGANDACLAPSPQHVPLEEYKSNLHRLISLIQSPDSAYYAPETKIVLINPPPMIESKWLDSRIEKWESFGKEGPKPDQNRDAKVAKEYAEACKDVARETGVPVVDLWQAVVEAAGGEGDDQL-DPYLYDGLHLTSEGYAVLFKALTALLDEKYPELNPET----LPMRMPHWSDVDPEDPRPAFEKVKNG 266
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BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: A0A218XZL7_PUNGR (SGNH_hydro domain-containing protein n=4 Tax=Punica granatum TaxID=22663 RepID=A0A218XZL7_PUNGR)

HSP 1 Score: 171 bits (432), Expect = 3.750e-48
Identity = 100/249 (40.16%), Postives = 136/249 (54.62%), Query Frame = 2 
Query:  173 VRPKVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVPGTAAPVKLVTIFLGANDCVLAGND---QHVPLEEYKSNLRQMAAHIRAANPEARVMFITPPPIHERKWMEHRNYQAR------EMDRQQEVTKAYATACAEVGKEVGAKVVDTYRLMGSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPALEGGEASMQCPHFSEIDPINPRESVLQ 892
            +RP++V FGDS+T+  F +   GW A L   + R+ DVV RGY GYNTRW L L++ +F   ++ P    T+F GAND  L G     QHVP+EEYK NLR++A H++  NP   +  ITPPP+ E    E R   AR        +R  E T  YA  C EV KE+G   VD +  M    +     YL DG+H T EGNR +++ + S    ++      L   E  + CPH SEI+P NP ++  Q
Sbjct:    1 MRPQIVLFGDSITEQSFRSG--GWGASLTDTYSRKADVVVRGYGGYNTRWALFLLHHIFPLDSSKPPVATTVFFGANDAALLGRSSESQHVPIEEYKDNLRKIACHLKECNPTMLIALITPPPVDE----ERRKNSARLSNSSCHAERTNEATGTYAKGCIEVAKELGLFSVDLWSKMQE-TEGWQKKYLSDGLHLTPEGNRVVYKEVISLFSEAW------LSAEEMPLDCPHSSEINPKNPEKAFQQ 236
[Close]
BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: Q5KCM4_CRYNJ (SGNH_hydro domain-containing protein n=6 Tax=Cryptococcus TaxID=5206 RepID=Q5KCM4_CRYNJ)

HSP 1 Score: 168 bits (425), Expect = 1.740e-46
Identity = 108/273 (39.56%), Postives = 154/273 (56.41%), Query Frame = 2 
Query:  170 AVRPKVVCFGDSLTQY---GFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVP------GTAAPVKLVTIFLGANDCVLAGNDQHVPLEEYKSNLRQMAAHIR-AANP----EARVMFITPPPIHERKWMEHRNYQAR---------EMDRQQEVTKAYATACAEVGKEVGAKVVDTYRLM-----GSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPALEGGEASMQCPHFSEIDPINPR---ESVLQG 895
            A    V+ FGDSLTQ    G  A+R+      + ++ RR DV+NRG+ GYN+ W +P+  ++F        G    VKL+TI+LGAND  L  + QHVPL++YKSN++ +   IR  ++P    E R++ I+PPPI E  W+E R  + +         E +R  EVTK YA  C EVG E+G  VVD +  +     G  D+ LA  Y +DG+H T+EG   LF+ +   IL +YPELNP        M+ PH++++D  NPR   E V +G
Sbjct:   23 AYTDAVMLFGDSLTQAWSAGSFAQRM------SEFYLRRADVINRGFGGYNSEWAIPVFEQVFATKKDREQGGIQQVKLITIWLGANDACLPSSPQHVPLDKYKSNVKHIVNLIRDPSSPYHSQETRIVLISPPPIIETAWIESRLEKWKSFGCEGPEPEQNRDAEVTKQYAEGCKEVGAELGVPVVDFWTAVVEAAGGEKDEQLAP-YFYDGLHLTSEGYAVLFKAVSGLILATYPELNPET----MPMRMPHWADVDTENPRAAFEKVKKG 284
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BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: A0A2J6LB29_LACSA (SGNH_hydro domain-containing protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6LB29_LACSA)

HSP 1 Score: 166 bits (420), Expect = 2.520e-46
Identity = 98/249 (39.36%), Postives = 136/249 (54.62%), Query Frame = 2 
Query:  173 VRPKVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRWLLPLVNRLFVPGTAAPVKLVTIFLGANDCVLAGND---QHVPLEEYKSNLRQMAAHIRAANPEARVMFITPPPIHERKWMEHRN--YQAREM---DRQQEVTKAYATACAEVGKEVGAKVVDTYRLMGSGDQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNPA-LEGGEASMQCPHFSEIDPINPRESVLQ 892
            +RP++V FGDS+T   F     GW A L   + R+ D+V RGY GYNTRW L L+N +F   +  P    T+F GAND  L+G     QHVPLEEYK NLR++  H++  +P   ++ ITPPP+ E   +E+    Y  + M   +R  EVT+ Y   C EV KE+G   V+ +  M    Q     +L DG+H T +GNR ++E +          LN A L   E  +  PH S+IDP NP ++  Q
Sbjct:    1 MRPQIVLFGDSITDQSFRYG--GWGASLTDAYSRKADIVVRGYGGYNTRWALFLLNHIFPLDSTTPPIATTVFFGANDAALSGRTSERQHVPLEEYKENLRKIVHHLKECSPTMLIVLITPPPVDEEGRLEYAKSLYGEKAMKIPERTNEVTRTYVNGCVEVAKELGVASVNIWSKMQE-TQGWQKKFLSDGLHLTGDGNRVVYEEV-------IKVLNGAWLSASEMPLDFPHHSQIDPHNPEKAFQQ 239
[Close]
BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Match: A0A0L0HIV6_SPIPD (SGNH_hydro domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HIV6_SPIPD)

HSP 1 Score: 166 bits (419), Expect = 5.600e-46
Identity = 90/217 (41.47%), Postives = 128/217 (58.99%), Query Frame = 2 
Query:  182 KVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRW---LLPLVNRLFVPGTAAPVKLVTIFLGANDCVLA-GNDQHVPLEEYKSNLRQMAAHIRAANPEARVMFITPPPIHERKWMEHRNYQAREMDRQQEVTKAYATACAEVGKEVGAKVVDTYRL-MGSG---DQTLADGYLHDGVHFTAEGNRKLFEGIRSEILLSYPELNP 808
            +++ FGDSLTQ+ F+ E  GW A L++ + R+ DVVNRG+SGYNT W   ++  + R  +P   A ++LVT+FLGAND  L     QHVPL  Y+ NL  + A IR  +   R++ ITPPPIHE KW +H   + R ++     T  Y  AC EV +E    ++DT+ +  G G   ++  AD  L DGVH    GNR L   + ++IL  +P+L P
Sbjct:   18 QILLFGDSLTQWSFNPEIEGWGAFLSNSYVRKLDVVNRGFSGYNTEWCKHIIAPILRTVLPSPGAQIRLVTVFLGANDATLPFWPQQHVPLSAYRDNLHSIIASIRNFSSNTRILLITPPPIHEGKWQKHCGQKGRSINLSVSNTLQYRNACIEVAREAKVPLLDTWEVYFGEGATYNEEKADAVLSDGVHLANLGNRLLGHAVLAKILTEWPDLAP 234
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig954.18527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM38_ECTSI1.070e-14971.23SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CKV6_9STRA1.140e-5841.38SGNH hydrolase-type esterase domain-containing pro... [more]
UPI001ABE02092.690e-4941.94isoamyl acetate-hydrolyzing esterase 1 homolog n=6... [more]
A0A0D2UC08_GOSRA4.040e-4942.40SGNH_hydro domain-containing protein n=7 Tax=Gossy... [more]
K8Z6E0_NANGC4.430e-4940.17Isoamyl acetate-hydrolyzing esterase 1-like protei... [more]
A0A5M6BTK6_9TREE1.740e-4839.85SGNH_hydro domain-containing protein n=1 Tax=Kwoni... [more]
A0A218XZL7_PUNGR3.750e-4840.16SGNH_hydro domain-containing protein n=4 Tax=Punic... [more]
Q5KCM4_CRYNJ1.740e-4639.56SGNH_hydro domain-containing protein n=6 Tax=Crypt... [more]
A0A2J6LB29_LACSA2.520e-4639.36SGNH_hydro domain-containing protein n=3 Tax=Lactu... [more]
A0A0L0HIV6_SPIPD5.600e-4641.47SGNH_hydro domain-containing protein n=1 Tax=Spize... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig954contigL-elsbetiae_contig954:10876..16263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score433.7
Seed ortholog evalue6.7e-119
Seed eggNOG ortholog2880.D7FM38
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.lipid catabolic process
EggNOG OGsCOG0214@1,KOG3035@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size983
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig954.18527.1prot_L-elsbetiae_contig954.18527.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig954 10958..16241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817020.9529846-UTR-L-elsbetiae_contig954:10875..109571622817020.9529846-UTR-L-elsbetiae_contig954:10875..10957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig954 10876..10957 -
1691683988.2860944-UTR-L-elsbetiae_contig954:10875..109571691683988.2860944-UTR-L-elsbetiae_contig954:10875..10957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig954 10876..10957 -
1622817021.0363846-UTR-L-elsbetiae_contig954:16241..162631622817021.0363846-UTR-L-elsbetiae_contig954:16241..16263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig954 16242..16263 -
1691683988.357833-UTR-L-elsbetiae_contig954:16241..162631691683988.357833-UTR-L-elsbetiae_contig954:16241..16263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig954 16242..16263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817020.9665596-CDS-L-elsbetiae_contig954:10957..112271622817020.9665596-CDS-L-elsbetiae_contig954:10957..11227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 10958..11227 -
1691683988.297172-CDS-L-elsbetiae_contig954:10957..112271691683988.297172-CDS-L-elsbetiae_contig954:10957..11227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 10958..11227 -
1622817020.9780223-CDS-L-elsbetiae_contig954:11788..118781622817020.9780223-CDS-L-elsbetiae_contig954:11788..11878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 11789..11878 -
1691683988.3066077-CDS-L-elsbetiae_contig954:11788..118781691683988.3066077-CDS-L-elsbetiae_contig954:11788..11878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 11789..11878 -
1622817020.9905562-CDS-L-elsbetiae_contig954:12162..122691622817020.9905562-CDS-L-elsbetiae_contig954:12162..12269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 12163..12269 -
1691683988.3160105-CDS-L-elsbetiae_contig954:12162..122691691683988.3160105-CDS-L-elsbetiae_contig954:12162..12269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 12163..12269 -
1622817021.001091-CDS-L-elsbetiae_contig954:12614..128291622817021.001091-CDS-L-elsbetiae_contig954:12614..12829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 12615..12829 -
1691683988.3254497-CDS-L-elsbetiae_contig954:12614..128291691683988.3254497-CDS-L-elsbetiae_contig954:12614..12829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 12615..12829 -
1622817021.0128748-CDS-L-elsbetiae_contig954:13168..132271622817021.0128748-CDS-L-elsbetiae_contig954:13168..13227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 13169..13227 -
1691683988.3357117-CDS-L-elsbetiae_contig954:13168..132271691683988.3357117-CDS-L-elsbetiae_contig954:13168..13227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 13169..13227 -
1622817021.026195-CDS-L-elsbetiae_contig954:16103..162411622817021.026195-CDS-L-elsbetiae_contig954:16103..16241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 16104..16241 -
1691683988.3468094-CDS-L-elsbetiae_contig954:16103..162411691683988.3468094-CDS-L-elsbetiae_contig954:16103..16241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig954 16104..16241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig954.18527.1

>prot_L-elsbetiae_contig954.18527.1 ID=prot_L-elsbetiae_contig954.18527.1|Name=mRNA_L-elsbetiae_contig954.18527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=293bp
MSSARLPHGSKHLLFGLLIGTAYGIALSGLWRSKESVWSQATSLTKHREA
VRPKVVCFGDSLTQYGFDAERLGWLALLAHWWERRFDVVNRGYSGYNTRW
LLPLVNRLFVPGTAAPVKLVTIFLGANDCVLAGNDQHVPLEEYKSNLRQM
AAHIRAANPEARVMFITPPPIHERKWMEHRNYQAREMDRQQEVTKAYATA
CAEVGKEVGAKVVDTYRLMGSGDQTLADGYLHDGVHFTAEGNRKLFEGIR
SEILLSYPELNPALEGGEASMQCPHFSEIDPINPRESVLQGL*
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mRNA from alignment at L-elsbetiae_contig954:10876..16263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig954.18527.1 ID=mRNA_L-elsbetiae_contig954.18527.1|Name=mRNA_L-elsbetiae_contig954.18527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5388bp|location=Sequence derived from alignment at L-elsbetiae_contig954:10876..16263- (Laminarionema elsbetiae ELsaHSoW15)
ACACACGCACGCAAGAGAAAGAATGAGCTCGGCACGCCTACCCCATGGAT
CGAAACATTTGTTGTTCGGGTTGCTGATCGGCACCGCCTACGGGATAGCT
TTATCAGGTCTATGGAGGAGCAAAGAATCAGTGTGGTCGCAAGCAACATC
ATTGACGAAGGCGAGTCATTCCAAGCCGACATGTGGGAGTAGGCGACATA
CCGGCGGCCCACCACCCGGTTCTTTGTGTCGTGCGTTAGAATGGCAGCAC
CTCGATTTATCAGAACCTGATGCTTTCCAGAATACTGCATATGACCCGAT
GCGGGGCGATCTTTCTGCACGCGTGTTGTGTATGTTCGGTTAGATGTTAG
ATAGCTGTATCCCTGTCTGCTGTCAAGTACCCATTCCGAGCAGGTTACAT
TAGATCCCTTATGAATTACGTTTTAGCCGAATGGCCCGGAATGTCGGCCA
CGAGGTGCGAGTATTTGCCCGGCAAATGTTCTGAGAATTCTCTCTGCTGC
GGTCTCCCGCACACGCCGTTTTTTCTGTATGTGTTCCCTTCAGCACCTCC
CCGTTCGCAGTCCACACGTTGGCTTCATTCAGCCCCCACTCAGCTTTCTC
GTTGTCGTCTCTTCCTACCTCTCTTCTTTTTCACGTCCTTGCTTTTCTCT
GGCTTTTCGTGTCTTTCTTCTCTCGATGAAGTTTGATTCTTTTAGAATTG
TTTTCGGAACGTTTATGCGCGAGCCAAATGTGTACCCGGCGAGGCACTCT
ACACACCCTTCACAGTACAAATCATGACTTCTCACTCTCGCTCACTTCCC
CGCTACTATACTACAGGTTCCTCTCTTTCCGCCTCTGTCTCTTCTGTCTG
TCACCCTCTAGACATACATGGAGGAAATTTGACTCTGCCGGCGGATCTCT
GTCGAACCTAACGTTCTGCCGGTCGGAGTGTCGGCATTTTGTTTTGAACC
TTTCGTTCGAGCCCGGTGTCCACGGTATCTACCTATGACTGAGCACGACA
CGGCTCTTCTCTCTTTATTTGTGTGGATCTCTCGATGTGCGTCTTTTTAT
AGTTGTCTCACGCATTCCATGTCTCCGTCCCTCTCGATGCGGAAATCCTG
TGTAGATTGTAGATTGCCTAGGGTCTGTAGGTTACCCTAGGCTGCTTCCT
TACTTTTTTTGTTTGTATTAGTTGTGGGTTAGGGTTAGGTGTGCTCTCGC
TACACACATAGTCTGGCGTATTTCCAGTTTCCAGAGGGAGATACATGCAA
ACGGGAGCGACGAAAAAAACAAGTGTTGTGTGTACAGGTCTGAGCGACAC
AAGGCGTACGGGTATGCTAGAAACAGGAACCCACGTACGTATGCGCGTCG
TATGTAGCTGTTGTGAACGTGTCTAGGAGGTTTTTAAATATCACACAAAA
AGGGGGTTAGTATGCCTACAACAGATCCCTCTGGAACGATATTTTCACAG
ACCGGACGTAGACTGCTGACATTTGTATACATTAATTAAAAATATGGAAG
GCTGGCGATGAAAAACCATGTGAGTCTGTGTTAAAGGCTGAGCGACGCAA
AAATGATTGATTAGCTGGAAACAGGAACCCAAACGCACGCGCGTCGTACC
TCAGATCCACGCGATATGTATCTACATAAAAATGTGGACGACCGGCGTCA
AAAAAACCAAAGTGTGTAGACAGGACTGAACAACGCAAGGCGTAGTGGTA
TGCTGGAAGCAGGAACCCACGCACGCATGCGTGTTGCCGCTATTGTGCAT
GTGGCCCGGAGGTTGAACATGGTCGATGAAAAATAAATCGTGGATGAAAG
TTGATCGAAATAATTTTGAATTCGCGGAAGGTACGTGGAGTGCGCCGCAA
GAAAGATTGGCAACACCGGTTCGAAGTCAGTCGCGAAAATTCTTAATGAG
ACCTAGAAAATCAGAATCGAAAGGCAATCTTGATACAAGGTAAGCCGTCA
AGAGCGAATCCGTCGAAGCCACATTCAGAAGAAACGAATCTTGGTGCACA
ATTGAAGTCCAATAATAACAAACACCTGCAAACCACAACTCTATCTGCAC
CTGAAAGATAGGGGAAAGATAAATTCAACCGAGGGTCGAATTCTAGGCAC
AAACAAGATAATTAAAACAAAAAACAACGTGAACAGGCTACACGCGGGCC
CTCTTGGCGGGGCTCTTGTAAGTTATAGGAGCCGGCGGGTTTAGCAGTAG
GTCGCGGGCCTGATCCATGCGACCGAAGCGTCCAGCGCCACGGCAGGTGG
TGCAGAACACTCCATTTTTGGGCATGGTAACCAGGCCCGGACTGGTGTCG
GAGCACTGGTCGCAAGTGCCTCCGACATTGTGGTCGATGGGAGTTCCCCG
ACACTCGTGTAGTCTGCGTGCATGTAGCACCCCTTTCCGCCAGAGGTAGT
AGGGCGTGGAAGGCTCGACGCGTTCATCGCACAGGGTGAAAATGATGGGT
CCCAGCTTCCTGGCGTCGGCCATAGCCTGGGTAGCCTATTTTACCCGTGT
ACTCCGGGATGCCATGCACGAGAAGGCTCAATTCCGGAATTGTTCCGAGG
TTGCTCTCGCTGCTCTGCTCCCGTCAGCACCTCCTCGTTGGTTGCACACC
ACCCGTTACAGTAAGTAGTGCAATTCAATCCTTCTCGCTCTCACTCTCTT
CTCCACTACTGCTGTACAGCTTCATGTTTCTCTTTCCGTCTCCGTCTGTC
ACGCTCAATCAACTGCTCTGTCTTGCAGGATGTTTTAGAAAAACTGACTA
TGTGTAGCTTGGGAATCTGCTGTTGTTCGCCGGATGGTTCTTTCTACCGC
CACACCTTCCTCTCTATTGAACATCATTTTTCGACGACAGCGACAGCACT
TCACAAGAAGTGGTTGTTTATCGTTGCCTTGGATTCGCTTTCAATAAAGC
GGGGCCGCGTGAGCGGCCAACCCTTGTATATGTACGTCCCATGCTCTCCA
AAGGACAGGAATAGCACTCGTTGCCTGATATTCGCTCTTAATCTGTGCCC
GTTTTCTGTTCCGCTCTACCGTCGAACGTTTGATAGCATCGTGAGGCTGT
TCGGCCCAAGGTGGTCTGCTTCGGCGACAGCCTCACCCAGTACGGGTGAG
ACCGGGAGACGACTGACTCAAAACGTGCTCGTGGTAGTGCTACAGATACG
TGCCTCATCTACTCCAGTTTATCGATCGGGAGGCACCGCGGTATCTAAGG
CTATCGGTTGTTGTCGGTTGGTGTTGTGCAGAGACCAATTCCTGCCTCTG
GGTCACGAGACTGCTTTCATGGACGAGCAGCAGAAGTTGTCGCTGCTGTT
GCGCTTGCTTCTTGTCTCTAGGCGCGAAACAAACAGCACCATCGTCGCAA
AACCATACCCACTCGCACATAGTTATAGGTATTCGACACCGCGCGTGAAG
ATCAATGAAGAAATTAACATTTTTTTCCCGACAGTTTTGACGCTGAGAGG
CTGGGCTGGCTTGCGCTGCTGGCGCACTGGTGGGAGCGCCGCTTCGACGT
GGTCAACCGCGGCTACAGCGGCTACAACACCCGGTGGCTCCTCCCGCTCG
TCAACAGGCTTTTTGTGCCCGGCACCGCCGCCCCGGTCAAGCTCGTCACC
ATATTTCTCGGCGCCAACGATTGCGTGCTTGCTGGGAATGATCAGCATGG
TGCGTGCGTGTGCGTGTGCGTGCGCTTGATACTTGCGACGGCGCGTGTGC
AACCGATAAATCTCGCCCGCACTGCCACCCTCGCCGAAAGCGAACAACTG
GAGCCAAAAGAAAGAAGTACTCCGTATCACGTTTTTATCACAGCACCAAA
TACTGTAGTTTGCAGTTTGCGTATCCAATCTTTACAGAAACTTCAAACTC
GACTCAGCAGAAGGCAGTCGCCAGGCAGCAGCAGTAGTGGCTCCGAAAAA
ATGAAAAAATGCCCCCGGCCCGAACGATGAACGTGATCGCATGCTAATGC
ACCCCCCGGAACTCCCCCCCACCCACCCACCCCCCGCCCCAAAGTACCCC
TCGAGGAATACAAGTCAAACCTGAGACAGATGGCGGCGCACATCCGCGCT
GCCAACCCGGAAGCGAGGGTGATGTTCATCACCCCCCCGCCCATCCACGA
GGTGCGTCGCCCCCATCGTCGTGCCGGCGCGCGCGCGCTTGCTAAGTTGT
ACTCGTAGCTGAAAAGCGTGTTTTTTTAGTTCCCATGCCTTTTTTGTGTT
GCGCCGTGCCCGGCTGCTGCGGCTGAATGCAGGTGCTTGTGTAAGACCCC
CGCACAAGAGTCTGCGTACGTGGTGTTCTTGCCGGTTCAGCTTTTTTAGC
ACCCCCCTCCGCCTGCAGTGTGGTGACCAAACTAATCAAAAGAGGACATG
CCTGTTCTGCCGTGGACGTTTGATCCCCGCCGCAGAGGAAGTGGATGGAG
CACCGAAACTACCAGGCCAGGGAGATGGATCGACAGCAAGAGGTCACAAA
GGCCTACGCTACGGCGTGCGCAGAGGTGAGCTGTATGCTCGTAAGGAACA
CAAAACCTTCCAACACGTACATGTGTATGTGTGTGCAGCCTCTTACAGAA
ACCCACAAGATCTACCCGTAAAGCTTCGCTGTAGTGTGCACGTCCCAGTT
CCAGGCTCGGTGTTTTCCCATGCTGGCGGACTCCTTACACCCGCCTGCTT
CAATGCAGACGGCAGTTTTTTGTTTTTGTGCGCAGAGGGGCAGAGGGGCA
GAGCCATCAAAGCTCATACCGCACGCCTCAGCTCACACCGCAAGCCTCAG
CTTTTCCGGCACCAACACCCGGGCGCGCTTGCTGCTCCACAATAATGAAG
GCATCGCCACTATATGATACCAACAGGGCAGACCGCCTTCACGGAAGAAA
TTAAGTGCGTCTAGGAAATAGAGGCAAAGGGGTTCCGTAACCCTAATCCT
ACCCTTAACCCCAAACCCCGACCCCTTTCCTATTTCCTGTGCCGTTTGCT
GAACACAAAACCTGCGGAGGCTACCGAAAAATCCGCCACACTACTGAGCC
CCCCCCCCGCGCGCGCGACGACCACCCCCTCAACAGGTGGGCAAAGAAGT
CGGCGCCAAGGTGGTGGACACTTACCGGCTCATGGGCTCGGGAGACCAGA
CCCTCGCGGACGGGTACCTCCACGACGGCGTCCACTTCACGGCCGAGGGT
AACCGAAAGTTATTCGAGGGGATTCGATCGGAGATACTCCTGTCGTACCC
GGAGTTAAACCCGGCGCTGGAGGGCGGGGAGGCTTCCATGCAGTGCCCGC
ACTTCTCGGAGATTGATCCGATCAATCCGAGGGAAAGCGTGCTTCAGGGT
CTGTAGGGCTGGTCTCGCGTGTAAGGTTTTTACTTTGGGGATGCGTGATG
TGTGGGTGTCAGTGAGTTTCTCGGTGAACGGAGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig954:10876..16263-

>mRNA_L-elsbetiae_contig954.18527.1 ID=mRNA_L-elsbetiae_contig954.18527.1|Name=mRNA_L-elsbetiae_contig954.18527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1758bp|location=Sequence derived from alignment at L-elsbetiae_contig954:10876..16263- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTCGGCACGCCTACCCCATGGATCGAAACATTTGTTGTTCGGGTT
GCTGATCGGCACCGCCTACGGGATAGCTTTATCAGGTCTATGGAGGAGCA
AAGAATCAGTGTGGTCGCAAGCAACATCATTGACGAAGATGAGCTCGGCA
CGCCTACCCCATGGATCGAAACATTTGTTGTTCGGGTTGCTGATCGGCAC
CGCCTACGGGATAGCTTTATCAGGTCTATGGAGGAGCAAAGAATCAGTGT
GGTCGCAAGCAACATCATTGACGAAGCATCGTGAGGCTGTTCGGCCCAAG
GTGGTCTGCTTCGGCGACAGCCTCACCCAGTACGGCATCGTGAGGCTGTT
CGGCCCAAGGTGGTCTGCTTCGGCGACAGCCTCACCCAGTACGGTTTTGA
CGCTGAGAGGCTGGGCTGGCTTGCGCTGCTGGCGCACTGGTGGGAGCGCC
GCTTCGACGTGGTCAACCGCGGCTACAGCGGCTACAACACCCGGTGGCTC
CTCCCGCTCGTCAACAGGCTTTTTGTGCCCGGCACCGCCGCCCCGGTCAA
GCTCGTCACCATATTTCTCGGCGCCAACGATTGCGTGCTTGCTGGGAATG
ATCAGCATGTTTTGACGCTGAGAGGCTGGGCTGGCTTGCGCTGCTGGCGC
ACTGGTGGGAGCGCCGCTTCGACGTGGTCAACCGCGGCTACAGCGGCTAC
AACACCCGGTGGCTCCTCCCGCTCGTCAACAGGCTTTTTGTGCCCGGCAC
CGCCGCCCCGGTCAAGCTCGTCACCATATTTCTCGGCGCCAACGATTGCG
TGCTTGCTGGGAATGATCAGCATGTACCCCTCGAGGAATACAAGTCAAAC
CTGAGACAGATGGCGGCGCACATCCGCGCTGCCAACCCGGAAGCGAGGGT
GATGTTCATCACCCCCCCGCCCATCCACGAGTACCCCTCGAGGAATACAA
GTCAAACCTGAGACAGATGGCGGCGCACATCCGCGCTGCCAACCCGGAAG
CGAGGGTGATGTTCATCACCCCCCCGCCCATCCACGAGAGGAAGTGGATG
GAGCACCGAAACTACCAGGCCAGGGAGATGGATCGACAGCAAGAGGTCAC
AAAGGCCTACGCTACGGCGTGCGCAGAGAGGAAGTGGATGGAGCACCGAA
ACTACCAGGCCAGGGAGATGGATCGACAGCAAGAGGTCACAAAGGCCTAC
GCTACGGCGTGCGCAGAGGTGGGCAAAGAAGTCGGCGCCAAGGTGGTGGA
CACTTACCGGCTCATGGGCTCGGGAGACCAGACCCTCGCGGACGGGTACC
TCCACGACGGCGTCCACTTCACGGCCGAGGGTAACCGAAAGTTATTCGAG
GGGATTCGATCGGAGATACTCCTGTCGTACCCGGAGTTAAACCCGGCGCT
GGAGGGCGGGGAGGCTTCCATGCAGTGCCCGCACTTCTCGGAGATTGATC
CGATCAATCCGAGGGAAAGCGTGCTTCAGGGTCTGTAGGTGGGCAAAGAA
GTCGGCGCCAAGGTGGTGGACACTTACCGGCTCATGGGCTCGGGAGACCA
GACCCTCGCGGACGGGTACCTCCACGACGGCGTCCACTTCACGGCCGAGG
GTAACCGAAAGTTATTCGAGGGGATTCGATCGGAGATACTCCTGTCGTAC
CCGGAGTTAAACCCGGCGCTGGAGGGCGGGGAGGCTTCCATGCAGTGCCC
GCACTTCTCGGAGATTGATCCGATCAATCCGAGGGAAAGCGTGCTTCAGG
GTCTGTAG
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