mRNA_L-elsbetiae_contig9539.18522.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 375 bits (962), Expect = 2.730e-119 Identity = 258/260 (99.23%), Postives = 258/260 (99.23%), Query Frame = 1 Query: 25 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGKASTGSRAYVNMDHGSLPETYD 804 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQG KAST SRAYVNMDHGSLPETYD Sbjct: 399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGRKASTDSRAYVNMDHGSLPETYD 658
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 300 bits (767), Expect = 2.400e-94 Identity = 201/269 (74.72%), Postives = 213/269 (79.18%), Query Frame = 1 Query: 1 MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGKASTGSRAYVNMDHGSLPETYDN 807 MPSTLSKASGSVER +ATTDIDRRCGDTN TPLMVASVIGSSRVV+DLLRQGASVS+ADSDGY ALHH+VYH+HLAVS LIEAGADL+ARPG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NPLLSA ELV+WYGTD CT+DGG LALATAASR VDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGG + +RAYVNM HG+LPETYD+ Sbjct: 1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGNINVSTRAYVNMAHGTLPETYDD 269
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 278 bits (710), Expect = 5.530e-82 Identity = 196/268 (73.13%), Postives = 204/268 (76.12%), Query Frame = 1 Query: 1 MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGKASTGSRAYVNMDHGSLPETYD 804 MPSTLSKASGS + IATTDIDRRCG TNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHHAVYHKHLAVSK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NPLLSA ELV+WYGTD CTSDGGALALATAASR VDIV FLC+AGVVDTEGVALCAAIEGCSEACVYLLLRRQGG A+TG+RAYVNMDHG+LPETY+ Sbjct: 422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGNANTGTRAYVNMDHGTLPETYE 689
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 243 bits (621), Expect = 2.800e-72 Identity = 207/316 (65.51%), Postives = 212/316 (67.09%), Query Frame = 1 Query: 1 MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSA-DXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAI-----------------------------------------------EGCSEACVYLLLRRQGGKASTGSRAYVNMDHGSLPETYD 804 MPSTLSKASGS + IATTDIDRRCGDTNQTPLMVASVIG SRVVRDLLRQGASVS+ADSDGY ALHHAVYHKHLAVSK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSA XXXXXXXXXX ELVYWYG D CTSDGGALAL TAASR VDIVTFL DAGVVDTEGVALCAAI EGCSEACVYLLLRRQGG A+TG+RAYVNMDHG+LPETYD Sbjct: 7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGVVDTEGVALCAAIXWRCTMDIWKWSASLCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEGCSEACVYLLLRRQGGNANTGTRAYVNMDHGTLPETYD 322
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 186 bits (473), Expect = 9.330e-54 Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 1 Query: 1 MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEM 333 MPSTLSKASGS++ IATT IDR CGDTNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDG ALHH+VYH HLAVSKDLIEAGADL+AR GG DTPLHVAATKGFCQ M Sbjct: 1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGM 111
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 159 bits (402), Expect = 5.120e-41 Identity = 108/243 (44.44%), Postives = 129/243 (53.09%), Query Frame = 1 Query: 103 VASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPG-----GID-TPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSA--DXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGKASTGSRAYVNMDHGSLPETYDN 807 VAS +G RVVR LLR GA VS AD+DG ALH ++ +KHLAVSK L++AGADL+AR G+ TPLHVAA KGF + M NP+L+A EL +G DGC+ DGGA AL AAS+NQVDIVTFL D GVVD EG+ALCAA+EG E C+ LLLR QG A+ +RAY NM H + Y N Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKA-------------------------NPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDTTLPMYSN 254
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 152 bits (385), Expect = 2.100e-38 Identity = 101/267 (37.83%), Postives = 134/267 (50.19%), Query Frame = 1 Query: 22 ASGSVERPI-----ATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGI---------DTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGKASTGSRAYVNMDH 780 +SGSVER + T+IDRRC + T LM A+ G R+VR LLR GA VS++ DG+ ALH A+ ++LAV+K LI+AGA+++A+ + TPLH+AA +GFC+ M NPLL ELV +G DGC +G AL TAA N I+TFL DAGV+DT+G ALC AIEG +EAC+ LL+ R+GG R Y N+D+ Sbjct: 26 SSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDN 292
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 113 bits (282), Expect = 4.830e-24 Identity = 90/278 (32.37%), Postives = 112/278 (40.29%), Query Frame = 1 Query: 1 MPSTLSKA-----SGSVERPI-----ATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGI---------DTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGKASTGSRAYVNMD 777 MPST S +GSVER + T+IDRRC + T LM A+ G R+VR LLR GA VS++ DG+ + + TPLH+A +GFC M NP+L ELV +G DGC+ +G AL TAA N I+TFL DAGV DT+G ALC AIEG SEAC+ LL+ R+GG A Y N D Sbjct: 1 MPSTTSTLYNAAWTGSVERTLDLLSDGFTEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRGGNAHMAESHYTNTD 278
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: D8LPL4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL4_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.920e-10 Identity = 99/237 (41.77%), Postives = 123/237 (51.90%), Query Frame = 1 Query: 91 TPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDAR---PGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCT-SDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGKASTGSRAYVNMDHGSL 789 TPLM+A+ G SR+V LL +GA + +G ALH + + H+ VS LI AGAD+ GG XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX + + + ELV G +GC SDGG +AL AA +DI+ L + GVVD+ G+ALCAA+ E V LLL+R S G +Y N GS+ Sbjct: 48 TPLMLAADGGYSRIVSFLLHKGAIAGIMGDEGVTALHVSARNGHVVVSLMLIRAGADVGLSCFTSGGXXXXXXXXXXXXXXXXXXXXXXXXXVDRRLEDGAXXXXXXXXXXXXXXXXXXXXXXXXXXIATMEGYVPLDVATEKFRVDIVRELVDDVGIEGCGGSDGGMVALRLAAQNGHLDILHILHERGVVDSSGLALCAALMHGGEKTVKLLLQRAAEYFSCGGSSYANSAVGSI 284
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Match: Q8QN90_ESV1K (EsV-1-199 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN90_ESV1K) HSP 1 Score: 69.3 bits (168), Expect = 3.450e-9 Identity = 110/237 (46.41%), Postives = 133/237 (56.12%), Query Frame = 1 Query: 91 TPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLD---ARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTS-DGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGKASTGSRAYVNMDHGSL 789 TPLM+A+ G SR+V LL +GA + +G ALH + + H+ VS LI AG D+ +R GG XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX ELV G +GC DGG +AL AA +DI+ L GVVD+ G+ALCAA+ E V LLL+R +S G +Y N G++ Sbjct: 48 TPLMLAADGGYSRIVSFLLNKGAIARIMGDEGVTALHVSAKNGHVLVSIMLIRAGVDVGLSCSRSGGYXXXXXXXXXXXXXXXXXXXXXXXXVDRCLEDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIVRELVERVGIEGCGGFDGGMVALRLAAQNGHLDILDILHKKGVVDSSGLALCAALMHGGEKTVKLLLQRSAEYSSPGGSSYANSALGAI 284 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9539.18522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9539.18522.1 >prot_L-elsbetiae_contig9539.18522.1 ID=prot_L-elsbetiae_contig9539.18522.1|Name=mRNA_L-elsbetiae_contig9539.18522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=331bp MPSTLSKASGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRback to top mRNA from alignment at L-elsbetiae_contig9539:2627..3881- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9539.18522.1 ID=mRNA_L-elsbetiae_contig9539.18522.1|Name=mRNA_L-elsbetiae_contig9539.18522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1255bp|location=Sequence derived from alignment at L-elsbetiae_contig9539:2627..3881- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9539:2627..3881- >mRNA_L-elsbetiae_contig9539.18522.1 ID=mRNA_L-elsbetiae_contig9539.18522.1|Name=mRNA_L-elsbetiae_contig9539.18522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1986bp|location=Sequence derived from alignment at L-elsbetiae_contig9539:2627..3881- (Laminarionema elsbetiae ELsaHSoW15)back to top |