mRNA_L-elsbetiae_contig9536.18519.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9536.18519.1
Unique NamemRNA_L-elsbetiae_contig9536.18519.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9536.18519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9536contigL-elsbetiae_contig9536:864..1391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9536.18519.1prot_L-elsbetiae_contig9536.18519.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9536 898..1284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817020.389923-UTR-L-elsbetiae_contig9536:863..8971622817020.389923-UTR-L-elsbetiae_contig9536:863..897Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9536 864..897 +
1691683987.9260867-UTR-L-elsbetiae_contig9536:863..8971691683987.9260867-UTR-L-elsbetiae_contig9536:863..897Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9536 864..897 +
1622817020.422271-UTR-L-elsbetiae_contig9536:1284..13911622817020.422271-UTR-L-elsbetiae_contig9536:1284..1391Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9536 1285..1391 +
1691683987.9516306-UTR-L-elsbetiae_contig9536:1284..13911691683987.9516306-UTR-L-elsbetiae_contig9536:1284..1391Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9536 1285..1391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817020.4045677-CDS-L-elsbetiae_contig9536:897..12841622817020.4045677-CDS-L-elsbetiae_contig9536:897..1284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9536 898..1284 +
1691683987.9395106-CDS-L-elsbetiae_contig9536:897..12841691683987.9395106-CDS-L-elsbetiae_contig9536:897..1284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9536 898..1284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9536.18519.1

>prot_L-elsbetiae_contig9536.18519.1 ID=prot_L-elsbetiae_contig9536.18519.1|Name=mRNA_L-elsbetiae_contig9536.18519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MLVQPERKRGCLMSREGVRVPSLSAFPCPTCYILQQMHATPIRLVPLVVV
VVRPIRWSCRKIGNAFIAAQSTRGYVVDSQQYRVSIGDPPMSCLPVNSQK
HQGGCLTAVCVNYRLDEQQTTPMTQPRR*
back to top

mRNA from alignment at L-elsbetiae_contig9536:864..1391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9536.18519.1 ID=mRNA_L-elsbetiae_contig9536.18519.1|Name=mRNA_L-elsbetiae_contig9536.18519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig9536:864..1391+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGAGCATATCTATCTGTGTATACTACTGCTGCATGCTTGTGCAACCAG
AACGAAAACGGGGGTGCTTGATGTCAAGAGAGGGTGTGCGTGTGCCTTCG
CTCTCTGCTTTTCCGTGTCCTACATGCTACATCCTACAGCAGATGCACGC
TACTCCTATTCGTCTTGTACCTTTGGTCGTGGTCGTGGTCAGGCCAATAC
GCTGGTCTTGTCGGAAGATAGGCAATGCTTTCATTGCAGCGCAAAGTACA
CGCGGGTATGTTGTGGATTCCCAGCAGTACAGAGTGTCCATCGGCGACCC
GCCCATGTCATGCTTGCCCGTCAACTCTCAAAAGCATCAAGGTGGATGTC
TCACGGCAGTTTGTGTAAATTATCGTCTGGATGAACAACAGACGACCCCG
ATGACGCAACCTCGGCGGTAATTTCGCCTGCAAATTAGTAGGTATAGGCT
GCGACTCGCTGCTTTTTCGGGAAATTGAAAATTGCGGGTGAGGAACAGGT
ATAGGCTGCGACTCGCTGCTTTTTCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9536:864..1391+

>mRNA_L-elsbetiae_contig9536.18519.1 ID=mRNA_L-elsbetiae_contig9536.18519.1|Name=mRNA_L-elsbetiae_contig9536.18519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig9536:864..1391+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGTGCAACCAGAACGAAAACGGGGGTGCTTGATGTCAAGAGAGGG
TGTGCGTGTGCCTTCGCTCTCTGCTTTTCCGTGTCCTACATGCTACATCC
TACAGCAGATGCACGCTACTCCTATTCGTCTTGTACCTTTGGTCGTGGTC
GTGGTCAGGCCAATACGCTGGTCTTGTCGGAAGATAGGCAATGCTTTCAT
TGCAGCGCAAAGTACACGCGGGTATGTTGTGGATTCCCAGCAGTACAGAG
TGTCCATCGGCGACCCGCCCATGTCATGCTTGCCCGTCAACTCTCAAAAG
CATCAAGGTGGATGTCTCACGGCAGTTTGTGTAAATTATCGTCTGGATGA
ACAACAGACGACCCCGATGACGCAACCTCGGCGGTAAATGCTTGTGCAAC
CAGAACGAAAACGGGGGTGCTTGATGTCAAGAGAGGGTGTGCGTGTGCCT
TCGCTCTCTGCTTTTCCGTGTCCTACATGCTACATCCTACAGCAGATGCA
CGCTACTCCTATTCGTCTTGTACCTTTGGTCGTGGTCGTGGTCAGGCCAA
TACGCTGGTCTTGTCGGAAGATAGGCAATGCTTTCATTGCAGCGCAAAGT
ACACGCGGGTATGTTGTGGATTCCCAGCAGTACAGAGTGTCCATCGGCGA
CCCGCCCATGTCATGCTTGCCCGTCAACTCTCAAAAGCATCAAGGTGGAT
GTCTCACGGCAGTTTGTGTAAATTATCGTCTGGATGAACAACAGACGACC
CCGATGACGCAACCTCGGCGGTAA
back to top