mRNA_L-elsbetiae_contig9530.18515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9530.18515.1
Unique NamemRNA_L-elsbetiae_contig9530.18515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9530.18515.1 vs. uniprot
Match: D7FVD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.570e-5
Identity = 53/173 (30.64%), Postives = 67/173 (38.73%), Query Frame = 1 
Query:   73 MSGEASSTGTTLMTSHQPESRVNYAAVQLEWHELFHAVLDADTQREQSTRLRRQWHVAARGYAMVKKDEFIEAPQTTSCSEEFGTDTPTPGHTDDEASDEEGGQTPLASDDEINNATTGDQLTTRQWTRSPRDSTANQDDSMASFGYDAAVVSPIFFGYTSTTDADLDAADAK 591
            M GEAS+T          + +++ A VQLEWHELF AVLDAD +RE STR          G A+                                                                        +Q D+  +FG DAAVVSP+FFGY STT+AD+DA +AK
Sbjct:    1 MPGEASAT-----RGEHADGQIDLAEVQLEWHELFRAVLDADEEREHSTR--------NLGGAI------------------------------------------------------------------------SQHDTEVTFGCDAAVVSPVFFGYMSTTEADVDAENAK 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9530.18515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVD1_ECTSI2.570e-530.64Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9530contigL-elsbetiae_contig9530:2326..4991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog2880.D7FVD1
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_000650.2
Exons5
Model size720
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9530.18515.1prot_L-elsbetiae_contig9530.18515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9530 2327..4991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817020.0361388-CDS-L-elsbetiae_contig9530:2326..24521622817020.0361388-CDS-L-elsbetiae_contig9530:2326..2452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 2327..2452 -
1691683987.6509326-CDS-L-elsbetiae_contig9530:2326..24521691683987.6509326-CDS-L-elsbetiae_contig9530:2326..2452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 2327..2452 -
1622817020.0495746-CDS-L-elsbetiae_contig9530:2962..30951622817020.0495746-CDS-L-elsbetiae_contig9530:2962..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 2963..3095 -
1691683987.6691387-CDS-L-elsbetiae_contig9530:2962..30951691683987.6691387-CDS-L-elsbetiae_contig9530:2962..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 2963..3095 -
1622817020.060182-CDS-L-elsbetiae_contig9530:3318..35551622817020.060182-CDS-L-elsbetiae_contig9530:3318..3555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 3319..3555 -
1691683987.6889045-CDS-L-elsbetiae_contig9530:3318..35551691683987.6889045-CDS-L-elsbetiae_contig9530:3318..3555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 3319..3555 -
1622817020.0759442-CDS-L-elsbetiae_contig9530:4668..47961622817020.0759442-CDS-L-elsbetiae_contig9530:4668..4796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 4669..4796 -
1691683987.7018816-CDS-L-elsbetiae_contig9530:4668..47961691683987.7018816-CDS-L-elsbetiae_contig9530:4668..4796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 4669..4796 -
1622817020.0869892-CDS-L-elsbetiae_contig9530:4898..49911622817020.0869892-CDS-L-elsbetiae_contig9530:4898..4991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 4899..4991 -
1691683987.7161152-CDS-L-elsbetiae_contig9530:4898..49911691683987.7161152-CDS-L-elsbetiae_contig9530:4898..4991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 4899..4991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9530.18515.1

>prot_L-elsbetiae_contig9530.18515.1 ID=prot_L-elsbetiae_contig9530.18515.1|Name=mRNA_L-elsbetiae_contig9530.18515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
IEDVEVVLDRFRARIGLDEDPSKDMSGEASSTGTTLMTSHQPESRVNYAA
VQLEWHELFHAVLDADTQREQSTRLRRQWHVAARGYAMVKKDEFIEAPQT
TSCSEEFGTDTPTPGHTDDEASDEEGGQTPLASDDEINNATTGDQLTTRQ
WTRSPRDSTANQDDSMASFGYDAAVVSPIFFGYTSTTDADLDAADAKERA
SLEQEEARIIEKQRAGRDCQLAKEREEASKRREARERTV
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mRNA from alignment at L-elsbetiae_contig9530:2326..4991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9530.18515.1 ID=mRNA_L-elsbetiae_contig9530.18515.1|Name=mRNA_L-elsbetiae_contig9530.18515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2666bp|location=Sequence derived from alignment at L-elsbetiae_contig9530:2326..4991- (Laminarionema elsbetiae ELsaHSoW15)
ATCGAGGATGTCGAAGTTGTCCTGGATCGCTTTCGCGCCCGTATTGGCCT
GGATGAAGACCCGAGCAAGGACATGTCTGGCGAAGCGTCATCGGTAAGTG
GTGTGCACCATGATGTTGACCGTCGGTAGCCAGGCTATGTTTATCGGGGA
AGGTTGTCCTAGCGTCACAATGTGTGCGCCACGTTTTTGCTGCAGACGGG
CACCACGCTGATGACTAGCCACCAACCAGAGAGCCGGGTCAACTATGCAG
CGGTGCAACTGGAATGGCACGAGCTTTTTCACGCCGTCCTGGACGCGGAC
ACACAAAGAGAACAATCCACTAGGTGAGTTCGCTTAATTTCGTTTGGGAG
GGTGATTAACCTCTAGAGGTATACCTAGCGAAACCTTTCCACCTATATAG
GACAGCGCCCGCTGACAAGAGACGTATAATATGGGCTGGAGGTTCTATTT
CTTATTTCGTCGCCACTGTCGAGCGTGGGGTTTTGTATAGGGTTTAGTGT
AGGGTCCATGATTGAGGCGTCTTTCTTAGTCCAAATTTCTTGTTTTTCGC
GGAAAACCCAGCCTCAATTTCTTATGAGAGTATTTCTTGTCAGCGGGTGC
TGTCTGTATACAACCTGCATGTAGGATGGACACTACTTTATCACATCCTG
AGCCCAGGGTACTAACATTTAGGGGTTTAGGGGGCTGCGGGCTGTTCTAC
GAGCTAAAGGGCCAGGTAGCACTCATTCGTTGGGTGCGATGCGCATGTTC
ATTTAGGGAATAGAACAGGAACCAGCCAGGGAACCCACCTCGGCGGTGTG
GAAGTGTCCTGTGCCGAGTTTCGAGCTCCAGACAAGGCTTTTGACCAACA
TACAGTACATGTACATAGCACGTTTCATAGGAGTAGTTCGCAGCCAACTC
AGAATATACGAAAAGCACGTGTTGACAAGCGTACCATTCCACACACAAGT
GAATTTGAGTACCCGTAAACAGCGTGCAGCGAGCCCTTCGGAGCTGCTCT
TTCCACGAAAATCGAACAATATAAGTTGTTGTCCGTACTGTTAAAGCCGA
ACTGGGGTTCAGCATTGCCCATGTTTGGAATCAGAAGTATTCAGACCTTA
AGAACATTTGTAGATTGTATTCGTGTATTGTATTTCAAGTTACAGTATCT
GCTTTATGCATTCCCCTTGACACTGCTGTAGCGCAGCTCTTTTTATCGGT
ATCGCACCTATGTAGTAAGGCTGATGGCACTGCCCTACTGACGCTACGTG
ATATGCTTATTGGGAGAGAAAAGGTGAAGTGCCGTCTCCACGTCCGCCGC
TGTCTGCTATTCTGTCACAATTTGTCACAATAACAAGTCGCGATCTCTCC
TATCAGATCTGAAACTATAAATTGGTACGAGTACTCGTTTACCAGAGCAG
TTTCTCCCAACATGGTTCCGCCGCGTGCGCATCAAGGTTACGGCGGCAGT
GGCACGTTGCGGCAAGGGGCTACGCGATGGTGAAGAAAGACGAATTTATT
GAAGCTCCGCAAACAACGTCTTGCTCTGAAGAATTCGGCACCGACACGCC
TACTCCTGGCCATACGGACGACGAAGCCAGTGACGAGGAAGGAGGACAAA
CGCCGCTTGCATCTGACGACGAAATAAATAACGCAACGACCGGAGACCAA
CTAACCACGCGCCAGTGGACTAGGCAAGATGGCTTGGGTTTCGCGAGGCG
ATGTGCGCCCAGACAAATCTTAAAAAAACTGGTTGTAGCCTCGTGAATAC
CACTCGTAGATGTGTTGAGGCTTTGGGCCTATGTATTCTGGCTACACAAA
ACGGGAGAAGAGTTGGGGTGTCTAAATAAGTGAATCATTTTTGACAACAA
AGAGACTCATGGGGTGGCTTTTTCCGTGCACTACTTCGCCTGGCAGGAGC
CCGCGCGATTCAACCGCAAATCAGGACGATTCAATGGCTTCCTTTGGATA
CGATGCCGCTGTGGTCAGCCCGATTTTCTTCGGATATACGTCGACAACAG
ACGCAGATTTGGATGCGGCGGACGCAAAGGTTGGAGCGTGCTGCCTTGCG
TACTCATCAAGACTATGTTTTCCGGCGAGATTGTTGCGTTGAGACTTCGT
AGTTGTCGGATTATTTCTCCGAACACGTTCTTCCGCACCTCTCACGTTGT
TCAAGCCCCCCTCTGATCGCTGCTACATACTGCGCGCTTCGTTGTGTGCA
TTTGTGGTATAATTTCAATCTGCCCATGAGCGATGAGTCAGAGGCATGCC
CATTCTTCTGATTTGACAAGCAAATCAGCTGGGAGTACTTTGTAAGACAG
GCATCTGGGAAGAAGGGTTACGTGGAGTAAGCGAGTTCCCAAATAGGCGT
GCCCATTCTTCTGATTTGACAAGCAAATCAGCTGGGAGTACTTTGTAAGA
CAGGCATCTGGGAAGAAGGGTTACGTGGAGTAAGCGAGTTCCCAAATCTT
GTTGGCCCTACGTGTGACAAAACGTACTCATATTTAGTCTCTTGTTTTGG
GCAGATGCTAACGAAAAGTAATTCCTGTGCTTGCGACAGGAACGAGCATC
GCTGGAGCAGGAAGAAGCTCGGATCATTGAAAAACAGAGGGCTGGGCGAG
ATTGCCAGCTTGCCAAAGAGAGGGAAGAAGCATCAAAACGGAGGGAAGCT
CGCGAAAGAACGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9530:2326..4991-

>mRNA_L-elsbetiae_contig9530.18515.1 ID=mRNA_L-elsbetiae_contig9530.18515.1|Name=mRNA_L-elsbetiae_contig9530.18515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig9530:2326..4991- (Laminarionema elsbetiae ELsaHSoW15)
ATCGAGGATGTCGAAGTTGTCCTGGATCGCTTTCGCGCCCGTATTGGCCT
GGATGAAGACCCGAGCAAGGACATGTCTGGCGAAGCGTCATCGATCGAGG
ATGTCGAAGTTGTCCTGGATCGCTTTCGCGCCCGTATTGGCCTGGATGAA
GACCCGAGCAAGGACATGTCTGGCGAAGCGTCATCGACGGGCACCACGCT
GATGACTAGCCACCAACCAGAGAGCCGGGTCAACTATGCAGCGGTGCAAC
TGGAATGGCACGAGCTTTTTCACGCCGTCCTGGACGCGGACACACAAAGA
GAACAATCCACTAGACGGGCACCACGCTGATGACTAGCCACCAACCAGAG
AGCCGGGTCAACTATGCAGCGGTGCAACTGGAATGGCACGAGCTTTTTCA
CGCCGTCCTGGACGCGGACACACAAAGAGAACAATCCACTAGGTTACGGC
GGCAGTGGCACGTTGCGGCAAGGGGCTACGCGATGGTGAAGAAAGACGAA
TTTATTGAAGCTCCGCAAACAACGTCTTGCTCTGAAGAATTCGGCACCGA
CACGCCTACTCCTGGCCATACGGACGACGAAGCCAGTGACGAGGAAGGAG
GACAAACGCCGCTTGCATCTGACGACGAAATAAATAACGCAACGACCGGA
GACCAACTAACCACGCGCCAGTGGACTAGGTTACGGCGGCAGTGGCACGT
TGCGGCAAGGGGCTACGCGATGGTGAAGAAAGACGAATTTATTGAAGCTC
CGCAAACAACGTCTTGCTCTGAAGAATTCGGCACCGACACGCCTACTCCT
GGCCATACGGACGACGAAGCCAGTGACGAGGAAGGAGGACAAACGCCGCT
TGCATCTGACGACGAAATAAATAACGCAACGACCGGAGACCAACTAACCA
CGCGCCAGTGGACTAGGAGCCCGCGCGATTCAACCGCAAATCAGGACGAT
TCAATGGCTTCCTTTGGATACGATGCCGCTGTGGTCAGCCCGATTTTCTT
CGGATATACGTCGACAACAGACGCAGATTTGGATGCGGCGGACGCAAAGG
AGCCCGCGCGATTCAACCGCAAATCAGGACGATTCAATGGCTTCCTTTGG
ATACGATGCCGCTGTGGTCAGCCCGATTTTCTTCGGATATACGTCGACAA
CAGACGCAGATTTGGATGCGGCGGACGCAAAGGAACGAGCATCGCTGGAG
CAGGAAGAAGCTCGGATCATTGAAAAACAGAGGGCTGGGCGAGATTGCCA
GCTTGCCAAAGAGAGGGAAGAAGCATCAAAACGGAGGGAAGCTCGCGAAA
GAACGGTGGAACGAGCATCGCTGGAGCAGGAAGAAGCTCGGATCATTGAA
AAACAGAGGGCTGGGCGAGATTGCCAGCTTGCCAAAGAGAGGGAAGAAGC
ATCAAAACGGAGGGAAGCTCGCGAAAGAACGGTG
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