mRNA_L-elsbetiae_contig9530.18514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9530.18514.1
Unique NamemRNA_L-elsbetiae_contig9530.18514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9530.18514.1 vs. uniprot
Match: D7FVD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD1_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.720e-30
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:   40 VTTLEAEFERARKKRMLELQTAKKVMAVEEYDPVLKQWNADEASITQAHESELAERKCKFAFLNREDSKSIQQAANAAKYA 282
            V T+EAEFER R+KR+ ELQTAKKVMA +EY PVLKQWN DEASIT+AHESELAERK KFAFLNREDSK+IQ AANAAKYA
Sbjct:   89 VVTMEAEFERGRQKRITELQTAKKVMAADEYGPVLKQWNIDEASITKAHESELAERKYKFAFLNREDSKNIQHAANAAKYA 169
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BLAST of mRNA_L-elsbetiae_contig9530.18514.1 vs. uniprot
Match: A0A6H5K633_9PHAE (Clu domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K633_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.500e-19
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:  115 MAVEEYDPVLKQWNADEASITQAHESELAERKCKFAFLNREDSKSIQQAANAAKYA 282
            MA EEY PVLKQWN DEASIT+AHESELAERK KFAFLNREDSK+IQ AANAAKYA
Sbjct:    1 MAAEEYGPVLKQWNIDEASITKAHESELAERKYKFAFLNREDSKNIQHAANAAKYA 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9530.18514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVD1_ECTSI1.720e-3082.72Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K633_9PHAE1.500e-1987.50Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9530contigL-elsbetiae_contig9530:1114..2368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue7.4e-27
Seed eggNOG ortholog2880.D7FVD1
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons4
Model size282
Cds size282
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9530.18514.1prot_L-elsbetiae_contig9530.18514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9530 1114..2368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817019.969302-CDS-L-elsbetiae_contig9530:1113..11801622817019.969302-CDS-L-elsbetiae_contig9530:1113..1180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 1114..1180 -
1691683987.5984535-CDS-L-elsbetiae_contig9530:1113..11801691683987.5984535-CDS-L-elsbetiae_contig9530:1113..1180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 1114..1180 -
1622817019.9803746-CDS-L-elsbetiae_contig9530:1341..14451622817019.9803746-CDS-L-elsbetiae_contig9530:1341..1445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 1342..1445 -
1691683987.6131291-CDS-L-elsbetiae_contig9530:1341..14451691683987.6131291-CDS-L-elsbetiae_contig9530:1341..1445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 1342..1445 -
1622817019.9934864-CDS-L-elsbetiae_contig9530:1994..20661622817019.9934864-CDS-L-elsbetiae_contig9530:1994..2066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 1995..2066 -
1691683987.6232493-CDS-L-elsbetiae_contig9530:1994..20661691683987.6232493-CDS-L-elsbetiae_contig9530:1994..2066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 1995..2066 -
1622817020.0043104-CDS-L-elsbetiae_contig9530:2329..23681622817020.0043104-CDS-L-elsbetiae_contig9530:2329..2368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 2330..2368 -
1691683987.6351407-CDS-L-elsbetiae_contig9530:2329..23681691683987.6351407-CDS-L-elsbetiae_contig9530:2329..2368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9530 2330..2368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9530.18514.1

>prot_L-elsbetiae_contig9530.18514.1 ID=prot_L-elsbetiae_contig9530.18514.1|Name=mRNA_L-elsbetiae_contig9530.18514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
EEASKRREARERTVTTLEAEFERARKKRMLELQTAKKVMAVEEYDPVLKQ
WNADEASITQAHESELAERKCKFAFLNREDSKSIQQAANAAKYA
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mRNA from alignment at L-elsbetiae_contig9530:1114..2368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9530.18514.1 ID=mRNA_L-elsbetiae_contig9530.18514.1|Name=mRNA_L-elsbetiae_contig9530.18514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1255bp|location=Sequence derived from alignment at L-elsbetiae_contig9530:1114..2368- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAAGCATCAAAACGGAGGGAAGCTCGCGAAAGAACGGTGATATCGCA
TGCATCCAACAGTTGTACCTATCGGATGACCTTTATCCAATTTTTCATTC
TCTAGTCGTTGTTCGGTCAGTTGCAGTAGATGACGCGTGCACTCTGCCGA
GGGGTTTGGTGGAGCCAAGCGCTCGCCTTTGTCTCTTCGTTGACGTTCGA
AGTCGTTTGACCTTTCACGATTATCTCTTCCAAACCTACCCACCCCGCAC
TCAACCTTGCTGCAGTTTTAAACGGAAACACACAACGACACCTTAACGGC
AGGTGACAACTCTTGAAGCGGAGTTCGAACGAGCACGGAAGAAACGGATG
TTGGAGCTACAGACAGCGAAAAAGGTGATTTCAATTATGGTCTCTGAGGC
ATGAAGCAATTGTGAGGACACCACGGGAGTTAAATAGTTGTTCGCCCAGG
GTGTTCATGAAATATTCGGTGGTTCGTGTATCCAGTAGCTCAACTCCTTT
TTTTTTCACATTTATTTCCAGTGCTCGATGGGCCCCCTGTCACGAGGACA
TCTTGCCAGATTACTGAACCGTGGTCACACAGAAGGGCCCCTTTCCCCAA
GGCCCCCACTCCCTCGTCTGCGGTGCTTGCGTAAGATTTTTGTCGCGAGA
AGGGTTCAGCCGTCCCTTTCCCTCGTCGACGGTGAGGTCGAAGTTTGTGT
ACACACGCCAAGCGCTATCCACTGACAGGGACGGAAGCGAGAGAAAAAAC
TCACTTCGCAAGAAAAAGTCGCTTCCGCTGAGATTCGAACTCGCGACCTG
CCTGCTAGAAGGTTCTGGGGTACCAACTAGACCACCGGGGCGACCGGCTA
CTGAAGGCGTTTATTTGTTATCCACGTGGATGCGTTTACTGGCGTGGTGT
TGACGGTCCTGGGCATTTGACAGGTAATGGCGGTGGAAGAATACGATCCC
GTGCTCAAGCAGTGGAACGCCGATGAGGCATCAATAACACAAGCACATGA
ATCGGAGCTCGCTGAAAGGAAGTGCAAGTGAGCGAGCGCTGGTCAGAACA
TCCAAGACCCGAACATCGGCCAAGTTGTTTATTAAGTCTAGTTCGAATAC
GATAAGAGTTCAGAATTGCAGAGGTGGGCGTGCCGACTTCAACCCTTACA
TCCCTTCTCGCCCCCCTTGCTTCCTGCTGACACGAAAGGTTCGCTTTCCT
GAATAGAGAAGACTCAAAAAGTATCCAACAAGCGGCAAACGCTGCCAAAT
ACGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9530:1114..2368-

>mRNA_L-elsbetiae_contig9530.18514.1 ID=mRNA_L-elsbetiae_contig9530.18514.1|Name=mRNA_L-elsbetiae_contig9530.18514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig9530:1114..2368- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAAGCATCAAAACGGAGGGAAGCTCGCGAAAGAACGGAAGAAGCATC
AAAACGGAGGGAAGCTCGCGAAAGAACGGTGACAACTCTTGAAGCGGAGT
TCGAACGAGCACGGAAGAAACGGATGTTGGAGCTACAGACAGCGAAAAAG
GTGACAACTCTTGAAGCGGAGTTCGAACGAGCACGGAAGAAACGGATGTT
GGAGCTACAGACAGCGAAAAAGGTAATGGCGGTGGAAGAATACGATCCCG
TGCTCAAGCAGTGGAACGCCGATGAGGCATCAATAACACAAGCACATGAA
TCGGAGCTCGCTGAAAGGAAGTGCAAGTAATGGCGGTGGAAGAATACGAT
CCCGTGCTCAAGCAGTGGAACGCCGATGAGGCATCAATAACACAAGCACA
TGAATCGGAGCTCGCTGAAAGGAAGTGCAAGTTCGCTTTCCTGAATAGAG
AAGACTCAAAAAGTATCCAACAAGCGGCAAACGCTGCCAAATACGCGGTT
CGCTTTCCTGAATAGAGAAGACTCAAAAAGTATCCAACAAGCGGCAAACG
CTGCCAAATACGCG
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