mRNA_L-elsbetiae_contig953.18511.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig953.18511.1
Unique NamemRNA_L-elsbetiae_contig953.18511.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig953.18511.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.600e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 2 
Query:  110 EEGAAAGVASCWRLHVGLLLDILLRIPAAADDSVAMVNHVALPCLETVAALCLNGVDYPALREEE 304
            EE      A+CWRLHVGLLL+IL R+PAAAD S+AMV HV LPCL+TVAALCL+GVDYP LRE+E
Sbjct: 5984 EEPEGREAAACWRLHVGLLLEILRRMPAAADASLAMVKHVVLPCLDTVAALCLDGVDYPDLREKE 6048
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BLAST of mRNA_L-elsbetiae_contig953.18511.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 9.020e-21
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 2 
Query:  134 ASCWRLHVGLLLDILLRIPAAADDSVAMVNHVALPCLETVAALCLNGVDYPALREEE 304
            A+CWRLHVGLLL+IL RIPAAAD S+AMV HV LPCL+TVAALCL+GVDYP LR++E
Sbjct: 6802 AACWRLHVGLLLEILRRIPAAADASLAMVKHVVLPCLDTVAALCLDGVDYPDLRKKE 6858
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BLAST of mRNA_L-elsbetiae_contig953.18511.1 vs. uniprot
Match: A0A835Z9Y3_9STRA (E3 ubiquitin-protein ligase UBR4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.800e-6
Identity = 29/66 (43.94%), Postives = 35/66 (53.03%), Query Frame = 2 
Query:   95 QPGSGEEGAAAGVASCWRLHVGLLLDILLRIPAAADDSVAMVNHVALPCLETVAALCLNGVDYPAL 292
            Q  S E        +CWR H+ LL D+L        DS A+  HVALPCL+T+AA CL     PAL
Sbjct: 4940 QAASSELQEEHNATACWRQHMRLLQDVLSEAATLLRDSPAVAQHVALPCLQTLAAACLKADLTPAL 5005
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig953.18511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLX0_ECTSI2.600e-2172.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J981_9PHAE9.020e-2178.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9Y3_9STRA1.800e-643.94E3 ubiquitin-protein ligase UBR4-domain-containing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig953contigL-elsbetiae_contig953:8087..15093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817019.6192906-CDS-L-elsbetiae_contig953:8086..81861622817019.6192906-CDS-L-elsbetiae_contig953:8086..8186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig953 8087..8186 +
1691683987.331009-CDS-L-elsbetiae_contig953:8086..81861691683987.331009-CDS-L-elsbetiae_contig953:8086..8186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig953 8087..8186 +
1622817019.635611-CDS-L-elsbetiae_contig953:14838..150921622817019.635611-CDS-L-elsbetiae_contig953:14838..15092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig953 14839..15092 +
1691683987.3448138-CDS-L-elsbetiae_contig953:14838..150921691683987.3448138-CDS-L-elsbetiae_contig953:14838..15092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig953 14839..15092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig953.18511.1prot_L-elsbetiae_contig953.18511.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig953 8087..15092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig953.18511.1

>prot_L-elsbetiae_contig953.18511.1 ID=prot_L-elsbetiae_contig953.18511.1|Name=mRNA_L-elsbetiae_contig953.18511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
VKKAPTQKHHRRYIVSNINQRRSEPCENEHRTARVGGRGSGGRGGLVLEA
SRRPPPGHPASNPRGGGRQRRDGEPRCAALPRDGGGAVPERCRLPCTPGR
RRRSRRRGGTNERRQNGG
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mRNA from alignment at L-elsbetiae_contig953:8087..15093+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig953.18511.1 ID=mRNA_L-elsbetiae_contig953.18511.1|Name=mRNA_L-elsbetiae_contig953.18511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7007bp|location=Sequence derived from alignment at L-elsbetiae_contig953:8087..15093+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAAGAAAGCACCAACACAAAAGCACCATCGTCGATATATAGTCTCCAA
CATAAATCAAAGAAGATCCGAGCCGTGTGAAAACGAGCACCGGACAGCCC
GCGCCGAGTTCTTCAATGGTGTATTTTTCAATGCAGAAATCCCACCTTCA
ATACTCCGCTGCTACTGCTGTCGTCACGCGGCTCGACAACAAACCTGAAT
ACGGAAACAGCTACGCCTGCTGTTGCATCGAAATTAAATCCTGAAACGCA
CGAATGAACCAAGCACTCAATGTTCAGATCCGGGCCAGTCTGACTTGCTA
AGCACAGAGCACTCGCCCAGCCTCGTTCACAACCACAAGGCTAAATTAAA
CTTTCATGGGTGTCTCCTTCATGCCGCCTAAAGAACGAACTAGTGGAAAA
AAATGTGTGTAAAAGCAGAAATAATAGTTGGTGAAAGCTTGACTGATAAA
AACAATAGGACACCAACGCACAAACCCCACTTCGCCTATCCTCGACCGAC
CGGGTCTTTTGCACCGGGGATCGCCAGTACTTGCTTGTCCGAGAAAACAA
AATGTGGGTTATCCGCAACTCTGGCTCTACCTCTGCATGGCGCACTCAGC
CCAGCCTCGTTCACAACCACAAGGCTAAATTAAACTTTCATGGGGGTCTC
CTTCTTGCGAGGCTTCATGCAGATTATCAGCATACGTCAACGTATGGTAC
AACCCGATGCAACGCCGCTGACCATTGGTCACGAACGAAGCAAAGACGTG
TAACACTCCCAAACGCAAATGTAAAGTAGTAAACTGCATGCACAACCACA
TAAAACCCCAGGGAGGAAATAGCCGAACGCGTGTAGGCCAGATCGCGTTG
CACCGGGTATCGAAACACACAGCGCCGTACTAATAGAGGATGTGCGAAAT
CCAATTGATATAAAATAAAATAAAAAACGAACGGACGGACGATTCTGCTA
AATAAACTGTATATAAAATAATAAAATAAACGAAGGTACAATCCTCCGTC
GTACCAATCCTCGAACGCGCAAGCAACGACCACGCTGACCATTGGACACG
ACTGAAGAAAGTGATGTATTTGAACGCAGATGCCGCCGAAAGAACGAACT
ATAATAGTGGAAAAAAATGTATGTAAAAGCAGAAATAATAGTTGGTGAAA
GCTTGACGGATAAAAACAATAGGACACCAACGCACAAACCCCACTTCGCC
TATCCTCGACCGACCGGGTCTTTTGCACCGGGGATCGCTAGTACTTGCTT
GTCCGAGAAAACAAGATGTGGGTTATCCGCAACTCTGGCTCTAGCTCTGC
ATGGCGCACTCAACCACAAATGGATGATCCGGGGGGCGTGTGGCCACGTT
CGGCTAGTTCTGACAGCAGTTACCTATAAAGACGGTACACCGTTACGATG
TATTCGCCGTTCTTCCCCTTCGCGTTAGAAAAAGAGCGGCAGTTCCCATC
ATTTGGGGGGAGGGGTCCGCAGTGTCAATACAAATCCCGATCATTTTGTA
TATCTTCTTCCGCACCTCGGTTCAGAATTTTTGAGCTTCTTTATCGCGGA
GAGCTGACATGCGATAAGCGTCTTGACAGCGGGGTGTACTGCATTTCGCA
AATTATTGAAGATAGGATGCTGTGAACCATAATCGCCGTGCACAAATGTT
CCTTTCACCGGAGTATGTCTGACAACATTTAGCAACAGGCAAACATATTT
TTCAAGATGTTCGCGCCATAAACAGGGGTCTCGGTCTTTTTTCATCCTGT
TCACCTAGGGAACCGACCGTGTCAGTGTAGGATTAGTACGGACTAATGGA
GGTCCTGGATATAAGACAAGACCACTTTTTCCACATGTAAACAACAACAA
CAATCACCCTTTCATGCCATCGACTTCTTCCTACTCGTCAGATTACCTAT
GGAGAGCACCGAACGGGGGCGACCTGAACCTCGCACACCCCTGTGAAACA
TCGATCGTGGACAGGAGGGGGGGGCAAGAAGTCCTTAACTTTTGGCCTGG
ACTACGCGTGTTGATCGATCGCGAGCTACCCGGCATGCGGACGGGCAGCC
CTTGGCCTTACCACACGTGTAACGACTGCACCAAGTTCATCAACGTGCAC
GGCGAGACGCTTCGCGTCCAGGCCGCCTCATACGACGGCCTCTACAGGGT
CGGCGTCCGAAAGTGCAGCGTACTGGGGTGCATCGAAGACATCCCGTCGC
ACGGAGACACGAGGTGATCTGACCGGGAGCTTTGGGTTTATCCCGCTTGC
GCATCGATTACTTGTATAACAGATTGTATACTATGACTTGTTTCGATCAG
TCGCGAACGCTCATCATCCATTTCCTGTATCCCATACAGTATGAACAACG
CAAACTTGTTTTATTTCTGGTGTTGTTTGTCACAGACGTGGCGGCAGATA
CCGTGACGCTCGCCACGCCCGCGTGTGTGCTGTTTACCCTCTCCGTACAT
GGAGCGGAGATCCATCGCGTGCATCCACGCCCGCGTGTGTGCTGTTTACC
CTCTCCGTACATGGAGCGGAGATCCATCGCGTGCATCCACGCCCGCGTGT
GTGCTGTTTACCCTCTCCGTACATGGAGCGGAGATCCATCGCATGCATCC
AACATATTTTCAAGTCTTTGTTAAAAGTATCACAACAATATATGGCGACC
AAAAACGGTGTACGGCATCCATCTATCTGGACATTTTTTTACGAAAATAC
GGCGTGCGCGTAAACGCAGAATGCTGTGGCTGGTTTAAGGCTGCCCGCGG
TCAGTGGTCCGGTGGCGTCCCCTGGTTTGCTGTACCCTGGCCTTAGACAG
GAACAAATAAAAGATAGGCACGCCTCCAAGAGAAACAAGAGAGAAAAACT
ACAGAGAGGAGGCGCGCGCATGAGCTTGTATTAGAGAGAGAGCGAGAGAT
AGATAACAGATTCGCACTCAGAGGATGCTGATGTAGACTAGACTGGACAT
ACATAATAGACCTGGAAGCGGGGGAGTGTTTCGTCTCACCATGTCCGTTA
ACAACGTGGCGCGGGATTTCATACATTCGTGCATGCACCCGGCCGGACGC
GCACCCTCCTAGGTCACCTAAAGTTAGGCCCGAGGGCACGTATAGGTATG
CAATTCAAAGCTGCAGTTGATTACTGAAGGGTTTGATATCCGCGGTTTCT
ATCTACCTACCCAACTAACTTTTTTTTTCGCTCATCTACGTACGTACTTG
TCCGCAGGTTCTGCGTCACACGCGAACCTGCTTTCGGCTGGAGGTGCATG
GTGACTAGCCCACTGGCACCACCAGGGGCGCCAGAACCACTTCCACCTTG
CCCGCTAGCCCGCCGGGCAGGGTACTTCTCGTGTCTACAACATGCACCCC
TGGGGCAGGAGTGGCGGCACTACAACAGCATGGGCGGGTGGTTCGCTCAA
GCGCGCGCGCGGAAGGCAGGCGAAGATATCGAGGTAACCCTGGCTGTTTT
TGGTCAACCTTCCGCGAAGTGCGGTCATGCGCGTGTAAGGTGCCAGTGTT
GTGTTGCCCGTCTCCATTCTCCCAGCGTCATGTGTGTTTCCTGTGCGTAA
TATTATTCCCTTTGTCGCATTTTTTGTGTTGTGCGGTGAATTTGGCCTAC
ATGCGTTTCTCCTCGCTGTCTTTTGCCCCGGGGATGACTATTCGAAAAAT
AAGCGCGACGAGATCCCCACGTTGCACGCCCATCTGGTCTCTGATCAAAA
CGAGACCGGCCTCCCCAAAAGGGCCCTGATTGTCCCTCTCATAGAGGCAA
ACAGATAGTCGAACGGTCCTGTTGGAGATGTTGTTCTGATGAACAGGGAG
GGTGACTAGTGACGGCCGTTCATATGAGTATGACACTTCGGAGGGCAACT
AGACTCGATGGCAACAACTATTATTTACGACGGGTTTAAATAATCCGGCG
TGTTTTAGACACTCCGCGGGCAATCTATATTTGCAATTTTCCATCTACAA
CCCTCGTACATGAGCGCGAGGGCGACGTGCCGCTACACAACCAGAACTTC
GATCGCCGTACCCCTTGTGCATACAACAAGACCACCGCTTGGCCGGCTAG
AACCCGGTGCGGAACACCCCGGCATTGTATGGGGAACCAAGATATGTAGA
ACCAGGGAACGTATCCCTCACGCGGTTGGTGATGTTGGCTTGTTCACTTT
TGTTTTCATCTTGCACAGCGTGTAGAGGAGAGCGGAGGGCTCCAGACTAT
CTGTATTTGGCCTCTTGTTTTGTGCTTTGTCGACCCCTCGGGGCCTTTTC
ACCAGAGTGGGAGGGCGCGGTACCTGCGAAGCATGTTCTCTCCTCGAAAG
ACACGCGGCCAGTTCGTCGCCAGCTATTCCTGCGGCATCATGGTCAACAT
GGCGCCGCTGTACGAGAGCGAAAGCCAGGAAGAGGTCGCCCGGGCGCTCA
ATCAGATATGGCCTGTACCCGAGACGAGACCCTTGGTATCGTTCTTCGAT
CTTGGGTGCCGTCGCCGTGACTATCTTGCGCACAACCTCGACCCGACTTG
GGGTGGTACGATCAACTTTGTGGATAGGTGAGATATCGCTTTCATTCCTC
TGCTGCTAATTTGCCCTTGCCCCATGAACACAAATTACGATTGGGCTTCG
ATAGTGTAAGGGTTGTGACAGACAGATAGCGTTGTCACGCACACCTCGTG
TTGATTTACACCCGCGGACGCCACGCCAGAAATTTGTGTTGAGATCTTGG
CTTTTATTCAACGGCCATGTACGGGCAGGCTCACAAAACGATCACCCTAC
TCTGGCCAGAGTATAATGTATCTTCTATGTCTCCTCCCTCTTCTTGTGTC
GGAGTCCTCACGGCGATCTTCGTCCTTCGTTGTTGACAAAGCGAGTTTTA
ACCCTGCCTGCTGGTAAAGTACGTTTGACTTCACTACCAATCAATTGTTT
CCTTCCGTTCGTCTTGCCCCTCATATCATGTATGACCTGTCTGCTCTAAA
TAAATCCTTTGACCAGATTTCACCATCAAACGCACGTGAACGCCCGGTGT
CTCTAGTTCTGTTCACCTGAACGACGAGACAACCCTCTCTTGTGGCATAG
TGATCTCCAGAACAACCTCAAGTTTAACTGGAACTCTTCGATCTCAGAGT
CGAATAACTCCTTCGTCAGCGGTGGGTCCATGTTGCTGTAGACCTCAAGA
TCCATCTGCCAGTGATGGGCGAAACAAAAAAAAAAATGTCGGGCCGGGGG
GGGCTTGCCGAAGTCATGGTCGCGCCGATCGACCTGTCGCTCTCATGGCG
CTCAAACGTTGAAGCCGGCGGTAGGTTACTCCATCGCGTTTTTGCTCCTT
TGCAAGCACGATACTAGCACTCGACGACGCGTACCACAGTTAAGGTCTAC
AAGTAGCGCCCTCGTCCTCCGCATTACAGCGGTAGCTCACACGTTGGCCC
TCCCTCAGACGATGCACGCTTCATCAAGACATCTACTTCCTTACGCCGCT
GTTCTATTCCCCAACATTGCAAGGACTTTCGTACATCGTCTCGAACCAGC
CACGGGTGATGGCGGAGTTCGTGCTGGCGAACAACCTGCGGGTAGGTTTC
GGGCGGACACGGGTTGCGGGTTTACACCCTGGTTAGATGAGTCTTAATGT
TGGAGTGTTCTGCCTATACAGCGACCCCCCGGAAATAGTGTGAAATTTTG
GGTTGCCTTCATTACGCCCTTATAAAATCAATAGCGTACCTCGTTCAACC
CATGCACTCGATCAAAAATTAACCTGTCACCCCCCACGCATTGGAGAGCC
ATACTGCTTCATCTAAACTCTGTATGGGTTGCCGACCATTCATGGGGCAC
CACCACCACAAACATCGTGCTCGCTCGTGCAATGCCCCCTTGTTGGGAAC
TGTGACAGGTGCAGAACGAGCTCCGGCTTTCGGAGTCGATGCTGGGGAAA
TCGCCATCCTTTGGCCTTTGATCGCTGTCCCAAGGAGTGCTGAGGGTACG
ATGGGGTAAGTGCAGCCTGACATTGGTTACGTCGCGTTAGATCATGGTCT
ACTAGCGAAAAGCCTTAAATTTAACGACGTTGTCTTCCGTTGACCAAATC
AAGTTCAGTACAGCAACAGCAAGGACCGGCGGCCAGGACGAGTATACAGT
CACTGTCTTCGTGCGCGTGGCTGACTACACCGTAACCGCTGTACCCGTCG
TCCTCATGTACGCGCTCCACGTCGAGGACAGGAACAGGCATTGCGGCGGG
GGGGGGGGGGGACGGGCGGCGGCGCTGACGACGGCGACCTACACGGACGC
CAGCATGGGTGCCCCGAACATCGTGGTTGCAGAGGTAGGCCTTATTTTGA
TTTAGCTATTGGCCCGCCGTGATCCGGGGGATCCGGGGGGACGGGAATGC
ACGGGCGACGAAACGTTTAGATCAAAATATTCACACAACACATCGATTCC
GTTGTACTTGTGGCGCCATCAAGAAAATTCAGGACGCATTCCGCGCCAAA
ACACCGTCGCTGATCTCGACCTCCCGTCCCGAAAATCAAACACGCGTGTG
TGTCCACCCCTCTTTTCCTATGTGCTTCGGCCAGTGGCGTCTCCCCCACC
CAAGTAGCCGGCCGGGAGGGTCCGCGACGACATCCTCTCCAAGGTCGCCT
TCGTGCTCCCGAGGCACCGGGTGCTCGACGTGCCCGGCCTGCTGCAGCGA
GACCTGCTGCTTCTGCGCAGCGTGAGCCTTTCGCCGACCGCCGCCGCCCT
CGCGGCGGCCCCTGCCGGAGGCAGCGGCCCCGGCAGCGGTGGGGCGGAGG
AGGGGTCGGGGGAAGAGGGAGCGGCGGCCGGGGTGGCCTCGTGCTGGAGG
CTTCACGTCGGCCTCCTCCTGGACATCCTGCTTCGAATCCCCGCGGCGGC
GGACGACAGCGTCGCGATGGTGAACCACGTTGCGCTGCCCTGCCTCGAGA
CGGTGGCGGCGCTGTGCCTGAACGGTGTCGACTACCCTGCACTCCGGGAA
GAAGAAGAAGAAGCCGGCGACGAGGCGGTACGAACGAGCGCCGCCAGAAT
GGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig953:8087..15093+

>mRNA_L-elsbetiae_contig953.18511.1 ID=mRNA_L-elsbetiae_contig953.18511.1|Name=mRNA_L-elsbetiae_contig953.18511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig953:8087..15093+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAAGAAAGCACCAACACAAAAGCACCATCGTCGATATATAGTCTCCAA
CATAAATCAAAGAAGATCCGAGCCGTGTGAAAACGAGCACCGGACAGCCC
GTCAAGAAAGCACCAACACAAAAGCACCATCGTCGATATATAGTCTCCAA
CATAAATCAAAGAAGATCCGAGCCGTGTGAAAACGAGCACCGGACAGCCC
GGGTCGGGGGAAGAGGGAGCGGCGGCCGGGGTGGCCTCGTGCTGGAGGCT
TCACGTCGGCCTCCTCCTGGACATCCTGCTTCGAATCCCCGCGGCGGCGG
ACGACAGCGTCGCGATGGTGAACCACGTTGCGCTGCCCTGCCTCGAGACG
GTGGCGGCGCTGTGCCTGAACGGTGTCGACTACCCTGCACTCCGGGAAGA
AGAAGAAGAAGCCGGCGACGAGGCGGTACGAACGAGCGCCGCCAGAATGG
AGGAGGGTCGGGGGAAGAGGGAGCGGCGGCCGGGGTGGCCTCGTGCTGGA
GGCTTCACGTCGGCCTCCTCCTGGACATCCTGCTTCGAATCCCCGCGGCG
GCGGACGACAGCGTCGCGATGGTGAACCACGTTGCGCTGCCCTGCCTCGA
GACGGTGGCGGCGCTGTGCCTGAACGGTGTCGACTACCCTGCACTCCGGG
AAGAAGAAGAAGAAGCCGGCGACGAGGCGGTACGAACGAGCGCCGCCAGA
ATGGAGGA
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