mRNA_L-elsbetiae_contig9529.18509.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9529.18509.1
Unique NamemRNA_L-elsbetiae_contig9529.18509.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9529.18509.1 vs. uniprot
Match: A0A6H5L5R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5R1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 7.810e-26
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 PHLIEVNCSPALGLDEPADREVKLPLISDLLDLVSVESACRANEASRAAKLSRARSLPGYSRPL 192
            PHLIEVNCSPALGLDEPADREVKLPLISDLLDLV +ESAC A EA+RA ++S+ARS+P YSRPL
Sbjct:  173 PHLIEVNCSPALGLDEPADREVKLPLISDLLDLVDIESACLAQEATRATRISKARSMPSYSRPL 236
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BLAST of mRNA_L-elsbetiae_contig9529.18509.1 vs. uniprot
Match: A0A7S1CGP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGP1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-6
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 PHLIEVNCSPALGLDEPADREVKLPLISDLLDLVSVESACRANEASRAAKLSRARSL 171
            P LIEVNCSPALG+D   D E+K PL+SD ++++S ++  RA  A+RA K +R R L
Sbjct:  218 PWLIEVNCSPALGIDCAVDEEIKYPLLSDTMEVLSHDAHRRAQAAARA-KATRRRGL 273
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BLAST of mRNA_L-elsbetiae_contig9529.18509.1 vs. uniprot
Match: A0A7S2DXB0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DXB0_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 7.300e-6
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 PHLIEVNCSPALGLDEPADREVKLPLISDLLDLVSVE---SACRANEASRAAKLSRARSLPGYS 183
            P L+EVNCSPALG++  ADREVK PLI+DL D+++ +       +  A   A+ ++AR  PG S
Sbjct:  363 PWLLEVNCSPALGVECTADREVKEPLIADLCDILAFQRGGGGAASLPAGXXARAAKARGWPGAS 426
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9529.18509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5R1_9PHAE7.810e-2682.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CGP1_9STRA1.320e-652.63Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2DXB0_9EUKA7.300e-646.88Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9529contigL-elsbetiae_contig9529:3138..4454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size377
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9529.18509.1prot_L-elsbetiae_contig9529.18509.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9529 3138..4453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817019.559021-CDS-L-elsbetiae_contig9529:3137..31961622817019.559021-CDS-L-elsbetiae_contig9529:3137..3196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9529 3138..3196 +
1691683987.2952957-CDS-L-elsbetiae_contig9529:3137..31961691683987.2952957-CDS-L-elsbetiae_contig9529:3137..3196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9529 3138..3196 +
1622817019.5718133-CDS-L-elsbetiae_contig9529:3848..41191622817019.5718133-CDS-L-elsbetiae_contig9529:3848..4119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9529 3849..4119 +
1691683987.3079522-CDS-L-elsbetiae_contig9529:3848..41191691683987.3079522-CDS-L-elsbetiae_contig9529:3848..4119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9529 3849..4119 +
1622817019.5847712-CDS-L-elsbetiae_contig9529:4408..44531622817019.5847712-CDS-L-elsbetiae_contig9529:4408..4453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9529 4409..4453 +
1691683987.3190534-CDS-L-elsbetiae_contig9529:4408..44531691683987.3190534-CDS-L-elsbetiae_contig9529:4408..4453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9529 4409..4453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9529.18509.1

>prot_L-elsbetiae_contig9529.18509.1 ID=prot_L-elsbetiae_contig9529.18509.1|Name=mRNA_L-elsbetiae_contig9529.18509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
PHLIEVNCSPALGLDEPADREVKLPLISDLLDLVSVESACRANEASRAAK
LSRARSLPGYSRPLESSSSSSSSPPSSAAAAAAPPSSSSAAAASSSPPPR
SDSLSGLLTRRPSRLDQHQAHQKQP
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mRNA from alignment at L-elsbetiae_contig9529:3138..4454+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9529.18509.1 ID=mRNA_L-elsbetiae_contig9529.18509.1|Name=mRNA_L-elsbetiae_contig9529.18509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1317bp|location=Sequence derived from alignment at L-elsbetiae_contig9529:3138..4454+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCACCTGATCGAGGTCAACTGCTCTCCAGCTCTGGGGCTTGACGAGCC
GGCAGACAGGTGGGGTGTGTAGAAAACTTTACACCACAATCTGTAAGAAA
AAAATATGTATGTATCTGTGTGTATGTACGTTGATTGGCTATCATTGCGA
AATATAGAACCCAAATGCACTCGCCGCCACCTTCTCGCCAGCACTTCTTA
CCCCGTACTACTTCACCACCTTCTTGATGCACGCTTCCATCGGCTCACGT
AAGCGAGAGCTGCCGTCGGTTTCGGGAAAACCCATTATTGGGCTGTTTGT
TCCTCCGCTGTGCGTGTCAAAAGTCCCTCCGCTAGTTCACAGGTTAGGCG
TAGACCGCTGCTATTTGTAGAACATTTTGTCAGAAAGAAACGAAACAGCG
GTGCTGTACCACTGCTGTAGAGGGAGGGTTCGGTCAGACTGTTTTGCAGA
CAAGGCAAGGGGCGTGTGCCACCCACCCGCCGTCATGAGGCACCATTTGC
TTGTGCTTTTTTCTTAAGAGTTCCATCGGGGGGCGTACATTCAACAGTTT
TCTGACACCCCGACTACCACGGCCTGCATTGGTTGTCACCACCACGCGAA
ACGGGATGACTCAAACATATGGGTTTTCGCCAGACGGCCTTCCTGGTGGC
ACCTAATTCGTTCCTGCCCTCCGGTTTGTTTGTGCGCACGTTTCAACACC
CACGCACGCAGGGAGGTGAAGCTGCCGTTGATCTCGGACCTCTTGGACCT
CGTGAGCGTGGAGTCCGCCTGCCGGGCGAACGAAGCGTCCAGAGCAGCCA
AGCTGTCGAGGGCACGGAGCTTGCCCGGCTATAGCCGGCCGCTGGAATCG
TCGTCGTCGTCGTCGTCGTCGCCACCGTCGTCGGCGGCGGCGGCAGCGGC
GCCTCCGTCATCTTCTTCTGCTGCTGCTGCTTCGTCATCGCCGCCGCCGC
GCTCGGACTCTCTCTCCGGTTTATTGACACGGGTGAGAACGGTCAGGCCC
AGGCGCCCGTAGTGCGGTGTCTGCTGGAATGTTGGGATCTTTCCGCCCGC
CGCGGGGGCTCGAGAGCGGCCTGCGGGGCTCGCCCTGCCTCCTCCATATG
TGGCCTCATGCCTCTGCCCGTATCGGAGTCTACTGAACGATTCAGCTCTA
AGTCGCTGTGACCAATGACGATGTGATAGCCGACGCCGGGTGCTTCACAC
TCAGTACCCGAGCACAGCCCTCCTACACCCCTTTCGCTGCCGATTTGTTT
CCACCACGCCCTTGCATCCAGCGCCCCTCCCGGTTGGATCAGCACCAAGC
CCACCAAAAGCAGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9529:3138..4454+

>mRNA_L-elsbetiae_contig9529.18509.1 ID=mRNA_L-elsbetiae_contig9529.18509.1|Name=mRNA_L-elsbetiae_contig9529.18509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig9529:3138..4454+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCACCTGATCGAGGTCAACTGCTCTCCAGCTCTGGGGCTTGACGAGCC
GGCAGACAGCCGCACCTGATCGAGGTCAACTGCTCTCCAGCTCTGGGGCT
TGACGAGCCGGCAGACAGGGAGGTGAAGCTGCCGTTGATCTCGGACCTCT
TGGACCTCGTGAGCGTGGAGTCCGCCTGCCGGGCGAACGAAGCGTCCAGA
GCAGCCAAGCTGTCGAGGGCACGGAGCTTGCCCGGCTATAGCCGGCCGCT
GGAATCGTCGTCGTCGTCGTCGTCGTCGCCACCGTCGTCGGCGGCGGCGG
CAGCGGCGCCTCCGTCATCTTCTTCTGCTGCTGCTGCTTCGTCATCGCCG
CCGCCGCGCTCGGACTCTCTCTCCGGTTTATTGACACGGGGAGGTGAAGC
TGCCGTTGATCTCGGACCTCTTGGACCTCGTGAGCGTGGAGTCCGCCTGC
CGGGCGAACGAAGCGTCCAGAGCAGCCAAGCTGTCGAGGGCACGGAGCTT
GCCCGGCTATAGCCGGCCGCTGGAATCGTCGTCGTCGTCGTCGTCGTCGC
CACCGTCGTCGGCGGCGGCGGCAGCGGCGCCTCCGTCATCTTCTTCTGCT
GCTGCTGCTTCGTCATCGCCGCCGCCGCGCTCGGACTCTCTCTCCGGTTT
ATTGACACGGCGCCCCTCCCGGTTGGATCAGCACCAAGCCCACCAAAAGC
AGCCACGCCCCTCCCGGTTGGATCAGCACCAAGCCCACCAAAAGCAGCCA
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