mRNA_L-elsbetiae_contig945.18440.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig945.18440.1
Unique NamemRNA_L-elsbetiae_contig945.18440.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig945.18440.1 vs. uniprot
Match: D7G2S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 4.490e-66
Identity = 116/250 (46.40%), Postives = 156/250 (62.40%), Query Frame = 2 
Query:    8 EEAFLRGAKRLGSVGRFNGWHRFELDSELVSQKCDGHVAQRLLSEKLG-GKTWAVDNFEVDRRVDGNTYDSIAAQKAVDLVRATRMGSLCYPTRGRLKGGSETVPTTIGTKSWGGSEFTSFLMTAGAVTNTHIDMHVVHDREVDVPAAGTMWSVDRDHVGPAKRAIVMCSHDKERVIQALRLNTTKTATCQYSGTIASLEGLVPVLKAHGIRFVVMEFPSSCSYIIPSGCAHMFVTLGLIETCAWHPSLD 754
            + A  R   R+G +G  NG   F +    V    +G +    L +  G   TW   NFE D +VD  ++++I    A DLVR TRMG LC+P R   +GG  T  T++  KSW GSE T+F M  G VT++H+D  +VH   + +PAAGTM SV+R   GPAKRAI+MC+HD +RV+  L L+  K ++ QY+G I  LEGL   L+ + IRFVV++FP  CSY IP+ CAHMFVTL L+E+CAWHP L+
Sbjct:  368 KSALARNLTRIGGLGGRNGTSMFGVSPSFVESWNEGVIDGDELKKAFGTNPTWTTQNFEEDDKVDVLSFNTIECVGASDLVRNTRMGGLCHPDRPPTRGGVLTGTTSVRGKSWSGSEVTAFAMRTGGVTHSHVDPQMVHGEHLYLPAAGTMRSVNRRGSGPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPILN 617
[Close]
BLAST of mRNA_L-elsbetiae_contig945.18440.1 vs. uniprot
Match: D7G7Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 9.140e-64
Identity = 112/247 (45.34%), Postives = 153/247 (61.94%), Query Frame = 2 
Query:   35 RLGSVGRFNGWHRFELDSELVSQKCDGHVAQRLLSEKLGGKT-WAVDNFEVDRRVDGNTYDSIAAQKAVDLVRATRMGSLCYP----TRGRLKGGSE-TVPTTIGTKSWGGSEFTSFLMTAGAVTNTHIDMHVVHDREVDVPAAGTMWSVDRDHVGPAKRAIVMCSHDKERVIQALRLNTTKTATCQYSGTIASLEGLVPVLKAHGIRFVVMEFPSSCSYIIPSGCAHMFVTLGLIETCAWHPSLDF 757
            +L ++G   G   F L  E V    +G+V   +L +  GGKT W + NFE ++RVD  +Y +I    A  +VR TRMG+LCYP    T G    G E T P +IG   W GSE T+F    G+VT+ H+D   V+++ + +PAAG M SV+R   GPAKRAIV+C+HD +RV++  +L+  K    QY G ++ L  L   LKA+ I FVV++FP +CSY IP  CAHM VTL L+ETCAW+P+L F
Sbjct:  146 KLRNLGVRRGTSMFSLSEEFVDCWVEGNVGDNMLRDAFGGKTTWTIQNFEENQRVDACSYQTIECAAATGIVRKTRMGALCYPDTADTAGTDNTGGELTKPVSIGEVLWAGSEVTAFATRRGSVTHIHVDALEVNEKPLFLPAAGAMRSVNRGDRGPAKRAIVVCAHDMDRVVRLFKLDVRKPPAMQYGGAVSDLRRLAAELKANSIGFVVIDFPEACSYAIPGKCAHMSVTLRLVETCAWNPALPF 392
[Close]
BLAST of mRNA_L-elsbetiae_contig945.18440.1 vs. uniprot
Match: A0A6H5KV31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.330e-42
Identity = 93/252 (36.90%), Postives = 135/252 (53.57%), Query Frame = 2 
Query:    5 MEEAFLRGAKRLGSVGRFNGWHRFELDSELVSQKCDGHVAQRLLSEKLGGKTWAVDNFEVDRRVDGNTYDSIAAQKAVDLVR-ATRMGSLCYPTRGRLKGGSETVPTTIGTKSWGGSEFTSFLMTAGAVTNTHIDMHVVHDRE---VDVPAAGTMWSVDR-DHVGPAKRAIVMCSHDKERVIQALRLNTTKTATCQYSGTIASLEGLVPVLKAHGIRFVVMEFPSSCSYIIPSGCAHMFVTLGLIETCAWHP 745
            M+ A  +   RLG +G+ +G     L  +L      G V  + L + L G T+ +DN E ++  D   Y ++       ++R  TRMG LC+P RG  +        +    +W GSE   F    G +TN H+D+  V       + +PAAG +  V+  D  GPAK+AIV+ + D  RVI+ L++NT K +  QY G   +L     VL+  GIRFVV+ FP  CSY +P+ CAH FVT+GL+E+ AWHP
Sbjct:   92 MQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGGTFTIDNTEENKSRDRTCYATMENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGG-MTNPHVDVQSVPGGTGTIIHMPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAFVTIGLVESSAWHP 342
[Close]
BLAST of mRNA_L-elsbetiae_contig945.18440.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.370e-31
Identity = 91/252 (36.11%), Postives = 133/252 (52.78%), Query Frame = 2 
Query:    5 MEEAFLRGAKRLGSVGRFNGWHRFELDSELVSQKCDGHVAQRLLSEKLGGKTWAVDNFEVDRRVDGNTYDSIAAQKAVDLVR-ATRMGSLCYPTRGR-LKGGSETVPTTIGTKSWGGSEFTSFLMTAGAVTNTHIDMHVVHD---REVDVPAAGTMWSVDR-DHVGPAKRAIVMCSHDKERVIQALRLNTTKTATCQYSGTIASLEGLVPVLKAHGIRFVVMEFPSSCSYIIPSGC----AHMFVTLGLIET 730
            M+ A  +G  R+G +G+ +G    +L   L      G V  + L + L G T+ +DN E ++R D   Y ++       ++R  TRMG LC+P RG  L+ G+ T     G  +W GSE   F    G +TN H+D+  V     R + +PAAG +  V+  +   PAK+AIV+ + D  RVI+ L++NT K +  QY G   +L     VLK+ GIRFVVM FPS CSY +P+      AH     GL+ +
Sbjct:  334 MQYAAGKGVARIGYIGKTSGRGPLKLAPGLTDAWRTGAVTDKQLRDTLNGGTFTIDNTEENKRTDKTCYATLENDTVTAMIREGTRMGELCFPRRGNHLQYGTLTGKEADGV-AWSGSECMLFAKDGG-MTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNYVEENRPAKQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPARPSFMRAHELALRGLLHS 583
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig945.18440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2S5_ECTSI4.490e-6646.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7Y6_ECTSI9.140e-6445.34Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KV31_9PHAE5.330e-4236.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP46_ECTSI1.370e-3136.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig945contigL-elsbetiae_contig945:18734..19896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1013
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig945.18440.1prot_L-elsbetiae_contig945.18440.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig945 18987..19892 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817013.0534692-UTR-L-elsbetiae_contig945:18733..189861622817013.0534692-UTR-L-elsbetiae_contig945:18733..18986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig945 18734..18986 -
1691683982.540624-UTR-L-elsbetiae_contig945:18733..189861691683982.540624-UTR-L-elsbetiae_contig945:18733..18986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig945 18734..18986 -
1622817013.089321-UTR-L-elsbetiae_contig945:19892..198961622817013.089321-UTR-L-elsbetiae_contig945:19892..19896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig945 19893..19896 -
1691683982.570087-UTR-L-elsbetiae_contig945:19892..198961691683982.570087-UTR-L-elsbetiae_contig945:19892..19896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig945 19893..19896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817013.0659184-CDS-L-elsbetiae_contig945:18986..195651622817013.0659184-CDS-L-elsbetiae_contig945:18986..19565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 18987..19565 -
1691683982.5500753-CDS-L-elsbetiae_contig945:18986..195651691683982.5500753-CDS-L-elsbetiae_contig945:18986..19565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 18987..19565 -
1622817013.0788753-CDS-L-elsbetiae_contig945:19715..198921622817013.0788753-CDS-L-elsbetiae_contig945:19715..19892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 19716..19892 -
1691683982.5593154-CDS-L-elsbetiae_contig945:19715..198921691683982.5593154-CDS-L-elsbetiae_contig945:19715..19892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 19716..19892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig945.18440.1

>prot_L-elsbetiae_contig945.18440.1 ID=prot_L-elsbetiae_contig945.18440.1|Name=mRNA_L-elsbetiae_contig945.18440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MEEAFLRGAKRLGSVGRFNGWHRFELDSELVSQKCDGHVAQRLLSEKLGG
KTWAVDNFEVDRRVDGNTYDSIAAQKAVDLVRATRMGSLCYPTRGRLKGG
SETVPTTIGTKSWGGSEFTSFLMTAGAVTNTHIDMHVVHDREVDVPAAGT
MWSVDRDHVGPAKRAIVMCSHDKERVIQALRLNTTKTATCQYSGTIASLE
GLVPVLKAHGIRFVVMEFPSSCSYIIPSGCAHMFVTLGLIETCAWHPSLD
F*
back to top

mRNA from alignment at L-elsbetiae_contig945:18734..19896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig945.18440.1 ID=mRNA_L-elsbetiae_contig945.18440.1|Name=mRNA_L-elsbetiae_contig945.18440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1163bp|location=Sequence derived from alignment at L-elsbetiae_contig945:18734..19896- (Laminarionema elsbetiae ELsaHSoW15)
GGGTATGGAAGAAGCTTTTCTCCGGGGCGCCAAGAGGCTTGGAAGTGTTG
GTCGCTTTAACGGTTGGCATAGGTTCGAGTTGGATTCGGAGCTTGTGAGC
CAAAAATGCGATGGTCATGTGGCCCAGCGGCTACTTTCGGAAAAACTCGG
TGGCAAGACATGGGCTGTTGACAACTTTGAGGTGGGACGCGTTCACTAAA
ACATGGTTTGTACTTACCGTTTTGAATAGTAACACAGAACGGGTCACCGC
TTTCTGACATCCGCGCGCGAATGGCTCGAGTCTGTATACGAACGTTTGAT
TCACCCACACCTGATCTGTTCTATCCTGCAGGTCGACAGGCGGGTTGATG
GCAACACGTACGACAGCATCGCGGCTCAGAAGGCAGTTGATCTGGTTCGC
GCAACGAGGATGGGGAGCTTGTGCTACCCGACGAGGGGTCGCTTGAAAGG
TGGTTCTGAAACGGTCCCCACCACAATAGGCACGAAGTCTTGGGGGGGCA
GCGAGTTTACGAGTTTTCTCATGACTGCGGGCGCTGTCACGAACACGCAT
ATCGACATGCACGTGGTCCACGACAGAGAGGTTGACGTGCCTGCGGCAGG
GACAATGTGGTCTGTTGACAGAGACCATGTCGGTCCCGCAAAGAGGGCAA
TAGTGATGTGTTCTCACGACAAGGAACGTGTGATTCAGGCTTTACGTCTA
AACACGACCAAAACTGCTACCTGTCAATATTCGGGGACAATAGCAAGTCT
TGAGGGCCTTGTACCAGTTTTGAAGGCGCACGGAATACGGTTTGTCGTCA
TGGAATTCCCATCAAGCTGTTCGTACATCATACCATCGGGGTGTGCTCAC
ATGTTCGTGACTCTAGGGTTAATAGAGACCTGCGCGTGGCACCCGTCTCT
AGATTTTTGATCTGGTGTCTGATAGAATGGTTGGATGGTATGTGGACGTG
GAACATTACGTGTTGTGTGTTTGGAATGTATTTCTATGTGCGCGGTAGGC
CATGAACCCGGCCTGTGTGGTGCAAACCAAGTTAGGAAAGGTACCTGTGC
TGGCGCATGTAACATGATCGTTAGCGCCGCCGTTTGTATCGCTGTTTGTC
ACCGGGGATCCACCGGTTGGTGCTGCAAGTGCACACGTATGAATTGTTAG
ACGGCGACCGCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig945:18734..19896-

>mRNA_L-elsbetiae_contig945.18440.1 ID=mRNA_L-elsbetiae_contig945.18440.1|Name=mRNA_L-elsbetiae_contig945.18440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig945:18734..19896- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGAAGCTTTTCTCCGGGGCGCCAAGAGGCTTGGAAGTGTTGGTCG
CTTTAACGGTTGGCATAGGTTCGAGTTGGATTCGGAGCTTGTGAGCCAAA
AATGCGATGGTCATGTGGCCCAGCGGCTACTTTCGGAAAAACTCGGTGGC
AAGACATGGGCTGTTGACAACTTTGAGATGGAAGAAGCTTTTCTCCGGGG
CGCCAAGAGGCTTGGAAGTGTTGGTCGCTTTAACGGTTGGCATAGGTTCG
AGTTGGATTCGGAGCTTGTGAGCCAAAAATGCGATGGTCATGTGGCCCAG
CGGCTACTTTCGGAAAAACTCGGTGGCAAGACATGGGCTGTTGACAACTT
TGAGGTCGACAGGCGGGTTGATGGCAACACGTACGACAGCATCGCGGCTC
AGAAGGCAGTTGATCTGGTTCGCGCAACGAGGATGGGGAGCTTGTGCTAC
CCGACGAGGGGTCGCTTGAAAGGTGGTTCTGAAACGGTCCCCACCACAAT
AGGCACGAAGTCTTGGGGGGGCAGCGAGTTTACGAGTTTTCTCATGACTG
CGGGCGCTGTCACGAACACGCATATCGACATGCACGTGGTCCACGACAGA
GAGGTTGACGTGCCTGCGGCAGGGACAATGTGGTCTGTTGACAGAGACCA
TGTCGGTCCCGCAAAGAGGGCAATAGTGATGTGTTCTCACGACAAGGAAC
GTGTGATTCAGGCTTTACGTCTAAACACGACCAAAACTGCTACCTGTCAA
TATTCGGGGACAATAGCAAGTCTTGAGGGCCTTGTACCAGTTTTGAAGGC
GCACGGAATACGGTTTGTCGTCATGGAATTCCCATCAAGCTGTTCGTACA
TCATACCATCGGGGTGTGCTCACATGTTCGTGACTCTAGGGTTAATAGAG
ACCTGCGCGTGGCACCCGTCTCTAGATTTTTGAGTCGACAGGCGGGTTGA
TGGCAACACGTACGACAGCATCGCGGCTCAGAAGGCAGTTGATCTGGTTC
GCGCAACGAGGATGGGGAGCTTGTGCTACCCGACGAGGGGTCGCTTGAAA
GGTGGTTCTGAAACGGTCCCCACCACAATAGGCACGAAGTCTTGGGGGGG
CAGCGAGTTTACGAGTTTTCTCATGACTGCGGGCGCTGTCACGAACACGC
ATATCGACATGCACGTGGTCCACGACAGAGAGGTTGACGTGCCTGCGGCA
GGGACAATGTGGTCTGTTGACAGAGACCATGTCGGTCCCGCAAAGAGGGC
AATAGTGATGTGTTCTCACGACAAGGAACGTGTGATTCAGGCTTTACGTC
TAAACACGACCAAAACTGCTACCTGTCAATATTCGGGGACAATAGCAAGT
CTTGAGGGCCTTGTACCAGTTTTGAAGGCGCACGGAATACGGTTTGTCGT
CATGGAATTCCCATCAAGCTGTTCGTACATCATACCATCGGGGTGTGCTC
ACATGTTCGTGACTCTAGGGTTAATAGAGACCTGCGCGTGGCACCCGTCT
CTAGATTTTTGA
back to top