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Homology
BLAST of mRNA_L-elsbetiae_contig9415.18410.1 vs. uniprot
Match: D7FHT1_ECTSI (Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHT1_ECTSI) HSP 1 Score: 240 bits (613), Expect = 1.590e-73 Identity = 112/133 (84.21%), Postives = 125/133 (93.98%), Query Frame = 3
Query: 57 RADFVLPVVETLGYLLPFVAQSLFSVFHLPDVVEKHEPLWAKHLFLKEASWADHWSVMARTRVALAFDTTAELKKVKTGALVLFGEDDTFTATGAQQLLDGIEGSRRMGLPGGHLCHITSPKAFSRAVTEYLL 455
+ADFVLPVVE++GYLLPFVAQSLFSV H+PDVVEK EPLWAKHL LKEASW DHWSVMART++AL FDTT EL+ +KTGALVLFGE+DTFTATGAQQL+DGIEGSR++GLPGGHLCHITSPKAFS AVT+YLL
Sbjct: 164 KADFVLPVVESIGYLLPFVAQSLFSVAHMPDVVEKDEPLWAKHLVLKEASWVDHWSVMARTKIALDFDTTHELENIKTGALVLFGENDTFTATGAQQLIDGIEGSRKVGLPGGHLCHITSPKAFSEAVTDYLL 296
BLAST of mRNA_L-elsbetiae_contig9415.18410.1 vs. uniprot
Match: D7G1R2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R2_ECTSI) HSP 1 Score: 167 bits (422), Expect = 6.890e-47 Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = 3
Query: 153 VEKHEPLWAKHLFLKEASWADHWSVMARTRVALAFDTTAELKKVKTGALVLFGEDDTFTATGAQQLLDGIEGSRRMGLPGGHLCHITSPKAFSRAVTEYLL 455
VEKHEP WAK +FLKEAS+A HWSVMART++AL+FDTT ELK +KTGALVL+GEDDTFTATGAQQLLDGIEGS+ +GLPGGHLCHITSPK FS+ +L
Sbjct: 36 VEKHEPRWAKRVFLKEASFAHHWSVMARTKIALSFDTTDELKDIKTGALVLYGEDDTFTATGAQQLLDGIEGSKTLGLPGGHLCHITSPKTFSKIGLPMML 136
BLAST of mRNA_L-elsbetiae_contig9415.18410.1 vs. uniprot
Match: A0A7S2XZC0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZC0_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.950e-33 Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 3
Query: 57 RADFVLPVVETLGYLLPFVAQSLFSVFHLPDVVEKHEPLWAKHLFLKEASWADHWSVMARTRVALAFDTTAELKKVKTGALVLFGEDDTFTATGAQQLLDGIEGSRRMGLPGGHLCHITSPKAFSRAVTEYLLG 458
+A ++LPVVETLG P +AQ+LF+ H+ DV+E HEP W K F KEASWA H+SVMAR ++ + + E+ + L+++G+DD FT G++ L I+ S + +PGGHL H+TSPK F+ V +++G
Sbjct: 155 KAKYLLPVVETLGLAFPGLAQTLFAYLHVDDVIEPHEPEWVKQFFKKEASWAHHYSVMARLKLVIPLNMAVEVGYLPHKVLIIYGQDDHFTRKGSEHLHQIIQASEIVAMPGGHLPHVTSPKLFAELVENFIVG 288
BLAST of mRNA_L-elsbetiae_contig9415.18410.1 vs. uniprot
Match: A0A7S3UUZ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUZ2_HETAK) HSP 1 Score: 135 bits (340), Expect = 4.030e-33 Identity = 63/136 (46.32%), Postives = 87/136 (63.97%), Query Frame = 3
Query: 45 LFGMRADFVLPVVETLGYLLPFVAQSLFSVFHLPDVVEKHEPLWAKHLFLKEASWADHWSVMARTRVALAFDTTAELKKVKTGALVLFGEDDTFTATGAQQLLDGIEGSRRMGLPGGHLCHITSPKAFSRAVTEYL 452
+ +A+++LP V LG L P AQ+LF+ H+ DV+E HEP W K F KEASWA H+SVMAR + + D E+K +K L+L+G+DD FT + L I SR +GLPGGHL H+T+PK+F+ V +L
Sbjct: 151 IIAFKANYLLPAVRGLGLLFPGAAQTLFAHLHVGDVIEPHEPKWVKDFFKKEASWAHHYSVMARLAIVIPLDILEEVKAIKHPTLLLYGKDDHFTGKDSLILNKAIPNSRMVGLPGGHLPHLTNPKSFAAEVQAFL 286
BLAST of mRNA_L-elsbetiae_contig9415.18410.1 vs. uniprot
Match: F0YAM6_AURAN (AB hydrolase-1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAM6_AURAN) HSP 1 Score: 127 bits (318), Expect = 3.680e-30 Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = 3
Query: 54 MRADFVLPVVETLGYLLPFVAQSLFSVFHLPDVVEKHEPLWAKHLFLKEASWADHWSVMARTRVALAFDTTAELKKVKTGALVLFGEDDTFTATGAQQLLDGIEGSRRMGLPGGHLCHITSPKAFSRAVTEYLLG 458
++ F LPVV +G P VAQ++F+ H DVVE EP W + F+KEASWA H SVMAR + + D TA + ++ +++G DDTFT LL + + ++ LPGGHL H+TSPKAF+R V +++ G
Sbjct: 150 LKKTFALPVVRVIGRAFPNVAQTIFAYVHASDVVEASEPEWVTNFFIKEASWAHHASVMARLSIVIPLDITARVVHLRQKTRLVYGADDTFTGATTDALLALLPDADKVALPGGHLPHLTSPKAFARLVLDFVAG 284
BLAST of mRNA_L-elsbetiae_contig9415.18410.1 vs. uniprot
Match: A0A7S3ZKI3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKI3_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.740e-22 Identity = 58/148 (39.19%), Postives = 83/148 (56.08%), Query Frame = 3
Query: 69 VLPVVETLGYLLPFVAQSLFSVFHLPDVVEKHEPLWAKHLFLKEASWADHWSVMARTRVALAFDTTAELKKVKTGALVLFGEDDTFTATGAQQLLDGIEGSRRMG-----------LPGGHLCHITSPKAFSRAVTEYLLGVPS*RSP 479
+LP+VE LG P +AQ++F+ H DVVE EP WA+ LF+KEASWA H SVM R ++ A D + ++ L++ G DD+FT +L ++ ++G LPGGHL H+TS F+RAV + L V + P
Sbjct: 155 LLPLVEFLGRAFPGIAQTIFAKVHASDVVEASEPAWARSLFVKEASWAHHASVMQRIKIVAALDIEDRVPRIAAPVLLVRGADDSFTGHTTARLRALLQSRGQVGTFPGGAVDVVTLPGGHLPHVTSSDLFARAVRDALFVVHMEKMP 302
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 1197 |
Cds size | 456 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817010.1834412-UTR-L-elsbetiae_contig9415:3718..4445 | 1622817010.1834412-UTR-L-elsbetiae_contig9415:3718..4445 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9415 3719..4445 - |
1691683980.436269-UTR-L-elsbetiae_contig9415:3718..4445 | 1691683980.436269-UTR-L-elsbetiae_contig9415:3718..4445 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9415 3719..4445 - |
1622817010.2527947-UTR-L-elsbetiae_contig9415:7149..7163 | 1622817010.2527947-UTR-L-elsbetiae_contig9415:7149..7163 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9415 7150..7163 - |
1691683980.5055869-UTR-L-elsbetiae_contig9415:7149..7163 | 1691683980.5055869-UTR-L-elsbetiae_contig9415:7149..7163 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9415 7150..7163 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817010.1934662-CDS-L-elsbetiae_contig9415:4445..4535 | 1622817010.1934662-CDS-L-elsbetiae_contig9415:4445..4535 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 4446..4535 - |
1691683980.4480283-CDS-L-elsbetiae_contig9415:4445..4535 | 1691683980.4480283-CDS-L-elsbetiae_contig9415:4445..4535 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 4446..4535 - |
1622817010.204057-CDS-L-elsbetiae_contig9415:5114..5222 | 1622817010.204057-CDS-L-elsbetiae_contig9415:5114..5222 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 5115..5222 - |
1691683980.4577386-CDS-L-elsbetiae_contig9415:5114..5222 | 1691683980.4577386-CDS-L-elsbetiae_contig9415:5114..5222 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 5115..5222 - |
1622817010.2181702-CDS-L-elsbetiae_contig9415:6011..6131 | 1622817010.2181702-CDS-L-elsbetiae_contig9415:6011..6131 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 6012..6131 - |
1691683980.4682302-CDS-L-elsbetiae_contig9415:6011..6131 | 1691683980.4682302-CDS-L-elsbetiae_contig9415:6011..6131 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 6012..6131 - |
1622817010.2296383-CDS-L-elsbetiae_contig9415:6837..6930 | 1622817010.2296383-CDS-L-elsbetiae_contig9415:6837..6930 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 6838..6930 - |
1691683980.479417-CDS-L-elsbetiae_contig9415:6837..6930 | 1691683980.479417-CDS-L-elsbetiae_contig9415:6837..6930 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 6838..6930 - |
1622817010.241079-CDS-L-elsbetiae_contig9415:7104..7149 | 1622817010.241079-CDS-L-elsbetiae_contig9415:7104..7149 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 7105..7149 - |
1691683980.4905505-CDS-L-elsbetiae_contig9415:7104..7149 | 1691683980.4905505-CDS-L-elsbetiae_contig9415:7104..7149 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9415 7105..7149 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9415.18410.1 >prot_L-elsbetiae_contig9415.18410.1 ID=prot_L-elsbetiae_contig9415.18410.1|Name=mRNA_L-elsbetiae_contig9415.18410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MAHGNGKAGGLFGMRADFVLPVVETLGYLLPFVAQSLFSVFHLPDVVEKH EPLWAKHLFLKEASWADHWSVMARTRVALAFDTTAELKKVKTGALVLFGE DDTFTATGAQQLLDGIEGSRRMGLPGGHLCHITSPKAFSRAVTEYLLGVP S* back to topmRNA from alignment at L-elsbetiae_contig9415:3719..7163- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig9415.18410.1 ID=mRNA_L-elsbetiae_contig9415.18410.1|Name=mRNA_L-elsbetiae_contig9415.18410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3445bp|location=Sequence derived from alignment at L-elsbetiae_contig9415:3719..7163- (Laminarionema elsbetiae ELsaHSoW15) ATTTAACACCAGCGATGGCGCATGGAAACGGCAAAGCGGGGGGTCTGTTC
GGGATGAGGGTGAGGGTTAGAGTGACGGAACCTCTGCCTCTATTTCCTAG
ATAAACTTAACTTTCTTCGCGGAGGCGATCCTACCTACCGCCGCCGCCAA
CACCCCCCCCCCCCCAACACCCCATTTCGTGCTCGTTCCTCCCGGCTGCG
CGATTGTCGTTTCTGTTCGCGTCCGCCCCTAAGGCTGACTTCGTACTGCC
GGTGGTGGAGACCCTCGGCTACTTGCTCCCGTTCGTGGCGCAGAGCCTTT
TCTCGGTGTTTCACCTTCCGGACGTGGTGAGAGTTGAGAGTTAGTTGCCT
GCTGTCCCGTGGCCAATCCCCGGCTTTCTGCTGAGTTGATGGAAGGCCCC
CGTCTTGCGGGGTGTTTCGGGGGTTGGGTGAAGGGCTCTCTCGAGGTTTG
CCGTGAGGCGAAGCTGTTGCGTCGCTTCGGCATCGGTTCTCTTCGGGCAC
TGGCGAGTGCGCGATGAAACGGTCGAGATGCTTGGTATAGGGGGGGGGGC
GTTGCTGCATGTAGATTTTGCCTTGTTCGTTCGTCCATCGTGTTGAAAGA
ATGTACGTCCTGGTTTTTTTGGTGGCTCCGTTTGTCGAGAGCGTCGTCGT
TTCCTTGCGCGGTGAAGCCGTCCGAGGAGAGAGCAGGCGCCGTGCAAACA
GTTGCTTTTTGGGGTAAGGGTTTAGTTTGGGGTCAGGGGTAGGGTTAGGT
GGGCCTTACTCCGTTCTCCATGGGCGGCAGTCGCGATGTTGCTTTCTACT
TTTTCTTTTTTTTTCACATTTATTTTCAGTGCTCAATGGGCTCCTTGTCA
CGAGAGAACCAGCGGCATCGTGGATCACAAGCGCACATATGTACACATTT
CAATGTTTTGGATCCCAGTGCGGCTTGCGGAAGGCGTGTTTTTAAGGGTG
ACCCCGAGCGTTGTCATAATGCCTCTTGTGTGTTTCGTGTTCGTTTCGAT
TTTGCGCGGCGTTTGGCTTTCCATCTGCGCAGGTCGAGAAGCACGAACCG
CTGTGGGCGAAACACTTGTTTTTGAAGGAGGCTAGCTGGGCGGATCACTG
GTCTGTTATGGCCAGGACAAGGGTGGCGCTGGCCTTCGACACTACGGCAG
AGGTGAATGAGCCGATCATTTTCTTTCGAATATGCTGCCGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGATGATGATGGTG
TTTTTTTCAGTTCGGCAAGGCCCTTAGTGACTAATCTGACACTGTGCACT
ACGAGAGGGTCCTTTGCGGCATGTTCCCATACACCTTATGTCTGCATGTG
ACTTTGAAGATGTATCTCACAAGCTTTGGCTCACGCGCCATGATGTTGTT
TTCGGGGCTTCCCCGTAGGGTCCGCCTAAATGGCGTGCTTTCAGGTTTCC
ACGAGGTTCTAGGAGCACGCGCAGTTTGTTTTGGTGTAAATTGGCTGTGG
TGTACATGCACTCAAAAGATGTCAATGATGCTTGGCGTTGGGCAGGCCTA
CATGGAGCACACGCAAATCTGGCTCCTGAAAAATCGTGCTTTCGCCTCGA
CAGGGGTAACGCAAAGCAGCGCGCATAGCCGAATTGAAGTCCATATAGGG
TCGCGCTGAAGTAGATTCGACAAAAAAAGACGAACACACACGCACACGCA
CACACATGCACACAACACACATGCACACATACATGCACACACACTTTATT
TTTTTCTTCCGCGGCGTCGAGTGTGCCTTGTTTTTGTGACACGGGCCCCC
AAGGATGTTTTGGACTATTGTAGAGAGCTAATGTGAGAAACAACAACAAC
AACAACAACAACAACAACAACAGCAACACTGCATGTACCTCTCATCTTGA
CATTTTGGCTCCGTATCCCCCTCGTGGCACCGTCCGAGCAGCTCAAGAAG
GTGAAGACCGGCGCCTTGGTGCTGTTCGGAGAGGATGACACTTTCACGGC
CACCGGCGCACAGCAGCTCCTCGACGGCATCGAGGGCTCGAGGAGAATGG
TGAGTGTTATCAGCGGTTGAGCGAACGAGCGAAAAGTGAGCGAGAAGTTA
TTTGAACCGCAGCCATGATGCCGAGCTCGTTGCGTCAGGGGTGCTCTCTT
CCGTGCGCTATTCCTCTTCTCCCGCCTCTGTCGGCCCTCTCTTGTAGAGG
CTTCTTTGTTTTTCCTAGCTCCGCGATTGGAAGGCTGTTCTGCACTTTTC
AATAGATCGAGTGTGCTCTTGCTTTTCGGAATTGCCCTATGCTAGTCTTG
GAGTGCCTCGCGACCGAGTGGATTGTGTTGAGCGTTTTGCTTAGGGGATG
GTGATGTACCCACCCGAGAAATCTACAACCATACCCGTAGTTGCTTCCAC
GCTCACGTTTGAGTCCATTTATCCCCCACTACACTTGTACTGTTGTCGAG
CTTGTACACCGGTCAGTGCATTGATAAGCCCCAGTAAGTTAAGTTACGGG
GCGAGTATTTCCACTATTGCTTACCGTTATCTCGTCGGTCTATTGTATTG
GCATGGAGCTCTGAACATCCCGCGTCATGCACGGCGTTGTATGCGGCGGC
CTTTGCTCCCGTGCCCTCTGTCTGGCAGGGGTTGCCAGGGGGGCACCTGT
GCCACATCACGAGCCCCAAGGCCTTCTCGCGAGCAGTCACGGAGTACCTG
CTTGGTGTCCCTTCGTGACGCTCTCCGCCGTGAAGCCACAAAGCAGGCGA
ACTCGCTTTTGTTTTGCGAACGAAGATGGTGAACTTTATTTGTTTTTTTT
GTCGGGTTCCCATGCTCCAGCCACGTGCAGGGGGGCTCGTGTGGTACGCA
TCCAGAGGTTTTTAGTGATCACGCCGAAATGTTGATGCGATGAACTCGTG
GCTGGGCCTGTAACTACAAAACTCGCCACAACTTCCTGAAACAGCAGTAG
TGGCTTACGAGCGGAGGAAGACCTCCCCGCTGCACGAACTGCGAGCCAAA
TAGCTTATCTAAGGCTCTGCTTTTTCGTTCTTGTGGTAGTCCTATTTGTT
TCCCCCCGGGTGATCCTGGACGTTCAGGCGGGACTTGGAGAGGGGAAATC
AGCTTTGTTTATTGCACGGCAAGTGTCGACTTTCCGCACGATTTCTGATG
GCGTGAAAATCACCCATCGAGTAGGCTTAGTGTGTATATATATATGATGT
GCTTATAGTAGCATCTCACGAAACCGATAGGGCGTGAGGTGAGGCGGCGA
AAGAGCGCCGTGTGCTGTATGTGGTGTGTGCGCCGGCTTTGAATTGGAAC
TTTCTCGCGTTTAGACCGCCTACGCCGGAAGTTAAGTTTGTCTGGGAAAA
TAACTCTAACCTTAACCCTAACCCCAACCACCGACCCCCCTTTCCCGGTT
TCCACACTTAATCTCATACGTGAGCTGAACACGAAAACCCTGCGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig9415:3719..7163- >mRNA_L-elsbetiae_contig9415.18410.1 ID=mRNA_L-elsbetiae_contig9415.18410.1|Name=mRNA_L-elsbetiae_contig9415.18410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig9415:3719..7163- (Laminarionema elsbetiae ELsaHSoW15) ATGGCGCATGGAAACGGCAAAGCGGGGGGTCTGTTCGGGATGAGGATGGC GCATGGAAACGGCAAAGCGGGGGGTCTGTTCGGGATGAGGGCTGACTTCG TACTGCCGGTGGTGGAGACCCTCGGCTACTTGCTCCCGTTCGTGGCGCAG AGCCTTTTCTCGGTGTTTCACCTTCCGGACGTGGCTGACTTCGTACTGCC GGTGGTGGAGACCCTCGGCTACTTGCTCCCGTTCGTGGCGCAGAGCCTTT TCTCGGTGTTTCACCTTCCGGACGTGGTCGAGAAGCACGAACCGCTGTGG GCGAAACACTTGTTTTTGAAGGAGGCTAGCTGGGCGGATCACTGGTCTGT TATGGCCAGGACAAGGGTGGCGCTGGCCTTCGACACTACGGCAGAGGTCG AGAAGCACGAACCGCTGTGGGCGAAACACTTGTTTTTGAAGGAGGCTAGC TGGGCGGATCACTGGTCTGTTATGGCCAGGACAAGGGTGGCGCTGGCCTT CGACACTACGGCAGAGCTCAAGAAGGTGAAGACCGGCGCCTTGGTGCTGT TCGGAGAGGATGACACTTTCACGGCCACCGGCGCACAGCAGCTCCTCGAC GGCATCGAGGGCTCGAGGAGAATGCTCAAGAAGGTGAAGACCGGCGCCTT GGTGCTGTTCGGAGAGGATGACACTTTCACGGCCACCGGCGCACAGCAGC TCCTCGACGGCATCGAGGGCTCGAGGAGAATGGGGTTGCCAGGGGGGCAC CTGTGCCACATCACGAGCCCCAAGGCCTTCTCGCGAGCAGTCACGGAGTA CCTGCTTGGTGTCCCTTCGTGAGGGTTGCCAGGGGGGCACCTGTGCCACA TCACGAGCCCCAAGGCCTTCTCGCGAGCAGTCACGGAGTACCTGCTTGGT GTCCCTTCGTGA back to top
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