mRNA_L-elsbetiae_contig9414.18409.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE) HSP 1 Score: 176 bits (446), Expect = 1.680e-46 Identity = 96/217 (44.24%), Postives = 133/217 (61.29%), Query Frame = 2 Query: 338 VTFWTWYTTTAYFCLSCASAYLCWRAIGKRTSNAIVTANNERFG--------------KPVPPLLERLQLVAWNVACVASLIVVTLYWLADYDGSAVGSLDILAHSLVALIMVVDQVLIADEYKMRHVIFTQVYGVAYITFNLLWFCLAPEKYRLLYDIMDWKRKTLVACFYGTVSIIILAPLFSLLHLRIYRHREIIHQNCQERLSAALTQRLAAE 946 +T WTWY TT YF +S SA+LCWRAI ++ V + F +PVP L LQL W+ AC+ SLIVV+++W A YDG + ++D AH VA IM++DQ L+ADE+K+R+V+F Q +GV YI FN+ W+ LAP+ RL+Y I+DW+ TL AC Y +I++ APLF L+H I+R RE ++ N R S A + A E Sbjct: 59 LTHWTWYATTTYFVVSALSAFLCWRAIAVTVASGPVRDGDPAFDAPTSSRPSDRTGSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVYHNRLARSSKAAAEAQAIE 275
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.500e-29 Identity = 69/155 (44.52%), Postives = 100/155 (64.52%), Query Frame = 2 Query: 473 PVPPLLERLQLVAWNVACVASLIVVTLYWLADYDGSA---VGSLDILAHSLVALIMVVDQVLIADEYKMRHVIFTQVYGVAYITFNLLWFCLAPEKYRLLY-DIMDWKRKTLVACFYGTVSIIILAPLFSLLHLRIYRHREIIHQNCQERLSAAL 925 PVP L LQLV WN+AC+ASL+V ++ DY V + D+ AH LVA M+VDQ+LIAD YK+ H+IFTQ+YG+ Y+ F+++WF PE + LY D +DW L AC G V++ +L P+ LLHL ++R RE +++ +++ A L Sbjct: 92 PVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYRRVRDKEIATL 246
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI) HSP 1 Score: 122 bits (307), Expect = 7.500e-29 Identity = 67/163 (41.10%), Postives = 101/163 (61.96%), Query Frame = 2 Query: 470 KPVPPLLERLQLVAWNVACVASLIVVTLYWLADYDGSAVGSLDILAHSLVALIMVVDQVLIADEYKMRHVIFTQVYGVAYITFNLLWFCLAPEKYRLLYDIMDWKRKTLVACFYGTVSIIILAPLFSLLHLRIYRHREIIHQNCQERLSAALTQRLAAEQESM 958 +PVP +L LQLV W+ AC+ SLIVVT++W A +++DQ L+ADE+K+R+++F Q +GV Y+ FN+ W+ LAP+ RL+Y I+DW+ TL AC Y +I++ APLF L+HL ++R RE ++ N A T + AAE +S+ Sbjct: 13 QPVPAVLRHLQLVLWSTACIGSLIVVTIFWGA---------------------LLLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVYHN-----RLARTSKAAAEAQSI 149
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI) HSP 1 Score: 122 bits (307), Expect = 1.870e-28 Identity = 65/144 (45.14%), Postives = 93/144 (64.58%), Query Frame = 2 Query: 473 PVPPLLERLQLVAWNVACVASLIVVTLYWLADYDGSA---VGSLDILAHSLVALIMVVDQVLIADEYKMRHVIFTQVYGVAYITFNLLWFCLAPEKYRLLY-DIMDWKRKTLVACFYGTVSIIILAPLFSLLHLRIYRHREIIH 892 PVP L LQLV WN+AC+ASL+V ++ DY + D+ AH LVA M+VDQ+LIAD +K+ H+IFTQ+YG+ Y+ F+++WF PE + LY D +DW L AC G V++ +L P+ LLHL ++R RE ++ Sbjct: 10 PVPRGLRWLQLVLWNIACIASLLVTFVWASEDYVRQVRQGTKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFRLREALY 153
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Match: D7G736_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G736_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.460e-27 Identity = 75/218 (34.40%), Postives = 116/218 (53.21%), Query Frame = 2 Query: 341 TFWTWYTTTAYFCLSCASA---YLCWRAI--GKRTSNAIVTANNERFGK-------------------PVPPLLERLQLVAWNVACVASLIVVTLYWLADYDGSAVGSLDILAHSLVALIMVVDQVLIADEYKMRHVIFTQVYGVAYITFNLLWFCLAPEKYRLLYDIMDWKRKTLVACFYGTVSIIILAPLFSLLHLRIYRHREIIHQNCQERLSAA 922 T+W WYT TAYF LS A+A + W A + N ++R G P+ + +QL WNVAC+ SL V +YW + Y G+ + S+D+ AH+L+A +MV DQ+L+A +++R + +V+ + Y+ ++LLW+ L E L+Y I+DW R A Y I +L P S+LH I+R RE I+ C++R A+ Sbjct: 56 TYWVWYTGTAYFALSFATACAHFRRWSAATQARAPDNGSAGGGSDRPGPSWSNLTGDVSTPALRTRIHPLEQAVLAIQLFTWNVACLGSLFVAIIYWSSLYTGTPITSVDMNAHTLIAFVMVADQMLVATPFRIRDMWKAEVFAITYLVYSLLWYFLEQE---LIYVILDWDRHFWEAFSYSVAGIFVLIPATSVLHYYIFRLRESIYATCRQRAEAS 270
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.430e-25 Identity = 65/199 (32.66%), Postives = 114/199 (57.29%), Query Frame = 2 Query: 338 VTFWTWYTTTAYFCLSCASAYLCWRAIGK--------RTSNAIVTANNERFGKPVPPLLERL---QLVAWNVACVASLIVVTLYWLADYDGSAVGSLDILAHSLVALIMVVDQVLIADEYKMRHVIFTQVYGVAYITFNLLWFCLAPEKYRLLYDIMDWKRKTLVACFYGTVSIIILAPLFSLLHLRIYRHREIIHQNC 901 VT+W WY YF +S A+AY +G R ++A+ R +P+ L Q+ +WNVACV SL++VT++W+A +D + + S D+ AH L+A +M +DQ+L+A +++ + ++ + ++ + Y+ FN+++F APE R++Y MDW + + V +L PL L+H ++R RE I++ C Sbjct: 63 VTYWGWYMAAIYFLVSTATAY---SFLGSPMASDGPVRGTHAVAPHRGNR-NQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPVMAIDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFRLREYIYETC 257
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI) HSP 1 Score: 107 bits (268), Expect = 3.620e-23 Identity = 49/134 (36.57%), Postives = 87/134 (64.93%), Query Frame = 2 Query: 500 QLVAWNVACVASLIVVTLYWLADYDGSAVGSLDILAHSLVALIMVVDQVLIADEYKMRHVIFTQVYGVAYITFNLLWFCLAPEKYRLLYDIMDWKRKTLVACFYGTVSIIILAPLFSLLHLRIYRHREIIHQNC 901 Q+ +WNVACV SL++VT++W+A +D + + S D+ AH L+A IM +DQ+L+A +++ + ++ + + + Y+ FN+++F APE R++Y MDW + + V +L PL L+H ++R RE I++ C Sbjct: 35 QVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPIMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFRLREYIYETC 168
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Match: D7G733_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.200e-13 Identity = 50/195 (25.64%), Postives = 102/195 (52.31%), Query Frame = 2 Query: 347 WTWYTTTAYFCLSCASAYLCWRAIGKRTSNAIVTANNER------FGKPVPPLLERLQLVAWNVACVASLIVVTLYWLADYDGSAVGSLDILAHSLVALIMVVDQVLIADEYKMRHVIFTQVYGVAYITFNLLWFCLAPEKYRLLYDIMDWKRKTLVACFYGTVSIIILAPLFSLLHLRIYRHREIIHQNCQERL 913 WT TAYF +S S+ LC + + + +R PVP LQ ++W + C++S++V++++W+ Y+ + ++ +++AL+M++DQ LIA E K ++ + V YI +N++++ + R+ +++ DW + AC + + + P F+ LH+ +YR RE ++ + + L Sbjct: 80 WTHMLATAYFVISLISSLLCMAYLSREKPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYESDVPVTSVYVSSTILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDERPGRACLWVFLILAFGVPGFTALHVFVYRLRERMYTSYKHNL 274 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9414.18409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9414.18409.1 >prot_L-elsbetiae_contig9414.18409.1 ID=prot_L-elsbetiae_contig9414.18409.1|Name=mRNA_L-elsbetiae_contig9414.18409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=304bp MYVFVGEGGHRLAERALLSTLCISFRHFLSLKPPSRTVSNGSRTALAAVAback to top mRNA from alignment at L-elsbetiae_contig9414:869..6918+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9414.18409.1 ID=mRNA_L-elsbetiae_contig9414.18409.1|Name=mRNA_L-elsbetiae_contig9414.18409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6050bp|location=Sequence derived from alignment at L-elsbetiae_contig9414:869..6918+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9414:869..6918+ >mRNA_L-elsbetiae_contig9414.18409.1 ID=mRNA_L-elsbetiae_contig9414.18409.1|Name=mRNA_L-elsbetiae_contig9414.18409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1824bp|location=Sequence derived from alignment at L-elsbetiae_contig9414:869..6918+ (Laminarionema elsbetiae ELsaHSoW15)back to top |