mRNA_L-elsbetiae_contig941.18404.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig941.18404.1
Unique NamemRNA_L-elsbetiae_contig941.18404.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig941.18404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig941contigL-elsbetiae_contig941:27237..28630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.4965277-CDS-L-elsbetiae_contig941:27236..273191622817009.4965277-CDS-L-elsbetiae_contig941:27236..27319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 27237..27319 +
1691683979.932869-CDS-L-elsbetiae_contig941:27236..273191691683979.932869-CDS-L-elsbetiae_contig941:27236..27319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 27237..27319 +
1622817009.5108964-CDS-L-elsbetiae_contig941:28326..286301622817009.5108964-CDS-L-elsbetiae_contig941:28326..28630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 28327..28630 +
1691683979.9468498-CDS-L-elsbetiae_contig941:28326..286301691683979.9468498-CDS-L-elsbetiae_contig941:28326..28630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 28327..28630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig941.18404.1prot_L-elsbetiae_contig941.18404.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig941 27237..28630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig941.18404.1

>prot_L-elsbetiae_contig941.18404.1 ID=prot_L-elsbetiae_contig941.18404.1|Name=mRNA_L-elsbetiae_contig941.18404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
HGASTRPRRSSRRPRKSPACLGRAFTTRKIRATLSFVTSRQNEILSGPVF
PAISSTPSLELWPLPTTRKHRSIAKFLKKRVRESCLQAHMVSSECWAYVH
VFCLNIAQRQKRHPGTIRPYPTLISVRP*
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mRNA from alignment at L-elsbetiae_contig941:27237..28630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig941.18404.1 ID=mRNA_L-elsbetiae_contig941.18404.1|Name=mRNA_L-elsbetiae_contig941.18404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1394bp|location=Sequence derived from alignment at L-elsbetiae_contig941:27237..28630+ (Laminarionema elsbetiae ELsaHSoW15)
CACGGAGCGTCGACGCGCCCGCGCAGAAGTTCGCGACGGCCCAGAAAATC
GCCAGCGTGCTTGGGCAGGGCGTTCACTACACGGTGCGCACCGCACCGAG
ATTTTATTTTGGTTTTGGTGTTGCTGTCTTTGTCTAGCGTTGTGTCTGCC
GCTCACCTGGAACACATATCGGTTTGTCGGCCCTCTTGAGTCTATTTTAT
TTTGTTAGCCTTGTGGGTAAGTTAGCCTGTGACCACGGGATCAACAGCAC
CATGCGTTGGGTGAGTACGGACATATAAAGGTACAGAGACCGGAACGGCT
GTAATATTGGTCACCATGCGTTGGGTGAGTACGGACATATAAAGGTACAT
ATATCAGAATGGTTGTAATATAGATCACCGTACGTTGGGTGAGTACAGAC
ATTTAAAGGTACAGAGACCGGAACGGCTGTAATACCTAATGCAGTCAAGT
TAGCCTGTGACCACGGGATCGAGCGCATCACGCGTTGGGTGTTTTACGGA
TAGATCGGGGTACTGAGCGCAGAGATCGGAATGCTTTTTTTATTGGGGTG
ACGACACACAACACACAACACACGCCTTTAAACATCTAAATGGCCAAAGC
CAGGCCGTGCTGCAGCCCTGGGGGGGCGAGGGTAAGGAAGGCAAGGATGG
GAGTGGTTGCCTTGGGCAGGGTGTTGTGAAGGGCGTGCTGTGTGTTTGCG
TACTTCTCCTAAATACTCGTTTATGTGCATATGCTCGAGGTCTCCTTGGA
AGCAAGGATTAGTCAGCCACCCGGCCAGTTGAGAAGCCAGCAATCGAGCC
GAGATGATCATATAGATATGTGTGTGTTGTGGCCCATTGATCGTGGTGTT
GCCGTTGCCGTTGCCGTTACTACTCATGTGTATCTAGATATGGAGATGGC
CACACGGTTGATCGCGCCTTTCCTCTCATTCGCTCTGTTACGCGTATTAC
CACCTCTTCTTCGCACCTGGGCCAGGTCGCTCGGCAGGCAGGTAGCATAC
ATATAGACTAGATAGCTAGACTATGCCACAACTCGTTCACCCTCTCTCGT
GACTTCCCTTACTTTCGCGCACCGTTTTGAATATGCACAGGAAAATAAGG
GCTACCCTATCCTTCGTGACATCAAGGCAGAACGAGATACTTTCAGGCCC
AGTATTTCCAGCGATATCATCGACGCCAAGTCTTGAATTGTGGCCTCTCC
CGACGACGAGGAAGCACCGGAGCATCGCCAAGTTTCTCAAGAAGCGCGTG
CGGGAGTCTTGTCTGCAGGCGCATATGGTTTCGTCAGAGTGTTGGGCGTA
CGTACATGTCTTTTGCTTGAATATTGCACAGCGCCAAAAGAGACATCCAG
GAACTATTCGACCCTACCCTACTCTAATTTCCGTCCGACCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig941:27237..28630+

>mRNA_L-elsbetiae_contig941.18404.1 ID=mRNA_L-elsbetiae_contig941.18404.1|Name=mRNA_L-elsbetiae_contig941.18404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig941:27237..28630+ (Laminarionema elsbetiae ELsaHSoW15)
CACGGAGCGTCGACGCGCCCGCGCAGAAGTTCGCGACGGCCCAGAAAATC
GCCAGCGTGCTTGGGCAGGGCGTTCACTACACGCACGGAGCGTCGACGCG
CCCGCGCAGAAGTTCGCGACGGCCCAGAAAATCGCCAGCGTGCTTGGGCA
GGGCGTTCACTACACGGAAAATAAGGGCTACCCTATCCTTCGTGACATCA
AGGCAGAACGAGATACTTTCAGGCCCAGTATTTCCAGCGATATCATCGAC
GCCAAGTCTTGAATTGTGGCCTCTCCCGACGACGAGGAAGCACCGGAGCA
TCGCCAAGTTTCTCAAGAAGCGCGTGCGGGAGTCTTGTCTGCAGGCGCAT
ATGGTTTCGTCAGAGTGTTGGGCGTACGTACATGTCTTTTGCTTGAATAT
TGCACAGCGCCAAAAGAGACATCCAGGAACTATTCGACCCTACCCTACTC
TAATTTCCGTCCGACCTTAAGAAAATAAGGGCTACCCTATCCTTCGTGAC
ATCAAGGCAGAACGAGATACTTTCAGGCCCAGTATTTCCAGCGATATCAT
CGACGCCAAGTCTTGAATTGTGGCCTCTCCCGACGACGAGGAAGCACCGG
AGCATCGCCAAGTTTCTCAAGAAGCGCGTGCGGGAGTCTTGTCTGCAGGC
GCATATGGTTTCGTCAGAGTGTTGGGCGTACGTACATGTCTTTTGCTTGA
ATATTGCACAGCGCCAAAAGAGACATCCAGGAACTATTCGACCCTACCCT
ACTCTAATTTCCGTCCGACCTTAA
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