mRNA_L-elsbetiae_contig940.18397.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig940.18397.1
Unique NamemRNA_L-elsbetiae_contig940.18397.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig940.18397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig940contigL-elsbetiae_contig940:23051..24148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1098
Cds size1098
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.3029413-CDS-L-elsbetiae_contig940:23050..241481622817009.3029413-CDS-L-elsbetiae_contig940:23050..24148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig940 23051..24148 -
1691683979.7695894-CDS-L-elsbetiae_contig940:23050..241481691683979.7695894-CDS-L-elsbetiae_contig940:23050..24148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig940 23051..24148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig940.18397.1prot_L-elsbetiae_contig940.18397.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig940 23051..24148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig940.18397.1

>prot_L-elsbetiae_contig940.18397.1 ID=prot_L-elsbetiae_contig940.18397.1|Name=mRNA_L-elsbetiae_contig940.18397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=366bp
MSRVKRFAFDDGFNGDVHGVAWPASLEYLIFEGDCNQSVQMVVWPVSLQV
LIFFGGVTSFAGVSWPPSLRSLMLFSSVPNESIAGATWPVSLKLLYLGRG
FNQPIDTVAWPPSLKKLHLGSDFIQPIAGVKWPASLQQLSLDGNFRHLAG
DITWPASLQQLTLGSVFNQPITGATWPPLLQQLTFGYKFNQSIAGVTWPP
SLQQLTFGDRFDQPIAKATWPPSLQRLRFNVKFNQPLADVSWPDSLQEIT
FSGDVEMHSWLHDGKLFVGEREMLSNFNQPITEVRWPASLLKVTFGDFFD
QPIDGVAWPASLRELAFGRDFRLPKKSFEWPASFQQLTIARRPNELLPSW
PGVRVIGIWRAYWNS*
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mRNA from alignment at L-elsbetiae_contig940:23051..24148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig940.18397.1 ID=mRNA_L-elsbetiae_contig940.18397.1|Name=mRNA_L-elsbetiae_contig940.18397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig940:23051..24148- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAGAGTCAAGCGGTTTGCTTTCGATGATGGATTCAACGGCGATGT
GCATGGAGTAGCCTGGCCAGCATCGCTTGAATATCTGATATTCGAAGGTG
ATTGCAATCAGTCTGTGCAAATGGTGGTATGGCCAGTATCGCTGCAGGTG
CTGATATTTTTTGGAGGCGTGACATCTTTCGCCGGAGTTTCATGGCCACC
ATCGCTTCGAAGCTTGATGTTATTCAGCAGCGTACCCAACGAGTCAATTG
CCGGAGCAACCTGGCCCGTGTCGCTCAAATTGCTTTACTTGGGACGTGGC
TTTAATCAGCCTATCGACACGGTAGCCTGGCCCCCTTCATTGAAAAAATT
GCATCTTGGTTCTGACTTCATTCAGCCCATCGCCGGTGTGAAGTGGCCTG
CTTCTCTGCAGCAACTGTCGCTTGATGGTAACTTCCGGCATCTAGCCGGT
GATATCACATGGCCAGCGTCCCTCCAACAGCTCACGCTCGGGTCAGTATT
CAACCAGCCCATCACCGGAGCAACGTGGCCCCCATTGCTGCAGCAGCTCA
CGTTCGGGTATAAGTTCAACCAGTCTATCGCCGGAGTGACGTGGCCCCCA
TCCCTGCAGCAGCTCACGTTCGGGGATAGATTCGACCAGCCTATCGCCAA
AGCAACATGGCCACCATCTCTTCAGCGACTAAGGTTCAACGTAAAGTTCA
ACCAGCCTCTCGCCGACGTCTCTTGGCCAGACTCTCTGCAAGAAATCACC
TTCAGCGGCGACGTGGAAATGCACTCCTGGCTCCACGATGGCAAGTTGTT
CGTAGGTGAACGTGAAATGCTGTCAAACTTCAACCAGCCCATCACGGAGG
TCAGGTGGCCTGCGTCGCTGTTGAAAGTTACGTTCGGCGACTTCTTTGAC
CAACCTATTGACGGTGTGGCGTGGCCGGCATCACTGAGGGAACTCGCCTT
TGGCCGAGATTTCAGGTTGCCAAAAAAAAGCTTCGAGTGGCCGGCGTCTT
TTCAGCAGCTGACGATAGCCCGCCGGCCCAACGAGCTACTGCCGTCATGG
CCGGGTGTGAGAGTCATTGGAATATGGAGGGCCTACTGGAATAGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig940:23051..24148-

>mRNA_L-elsbetiae_contig940.18397.1 ID=mRNA_L-elsbetiae_contig940.18397.1|Name=mRNA_L-elsbetiae_contig940.18397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2196bp|location=Sequence derived from alignment at L-elsbetiae_contig940:23051..24148- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAGAGTCAAGCGGTTTGCTTTCGATGATGGATTCAACGGCGATGT
GCATGGAGTAGCCTGGCCAGCATCGCTTGAATATCTGATATTCGAAGGTG
ATTGCAATCAGTCTGTGCAAATGGTGGTATGGCCAGTATCGCTGCAGGTG
CTGATATTTTTTGGAGGCGTGACATCTTTCGCCGGAGTTTCATGGCCACC
ATCGCTTCGAAGCTTGATGTTATTCAGCAGCGTACCCAACGAGTCAATTG
CCGGAGCAACCTGGCCCGTGTCGCTCAAATTGCTTTACTTGGGACGTGGC
TTTAATCAGCCTATCGACACGGTAGCCTGGCCCCCTTCATTGAAAAAATT
GCATCTTGGTTCTGACTTCATTCAGCCCATCGCCGGTGTGAAGTGGCCTG
CTTCTCTGCAGCAACTGTCGCTTGATGGTAACTTCCGGCATCTAGCCGGT
GATATCACATGGCCAGCGTCCCTCCAACAGCTCACGCTCGGGTCAGTATT
CAACCAGCCCATCACCGGAGCAACGTGGCCCCCATTGCTGCAGCAGCTCA
CGTTCGGGTATAAGTTCAACCAGTCTATCGCCGGAGTGACGTGGCCCCCA
TCCCTGCAGCAGCTCACGTTCGGGGATAGATTCGACCAGCCTATCGCCAA
AGCAACATGGCCACCATCTCTTCAGCGACTAAGGTTCAACGTAAAGTTCA
ACCAGCCTCTCGCCGACGTCTCTTGGCCAGACTCTCTGCAAGAAATCACC
TTCAGCGGCGACGTGGAAATGCACTCCTGGCTCCACGATGGCAAGTTGTT
CGTAGGTGAACGTGAAATGCTGTCAAACTTCAACCAGCCCATCACGGAGG
TCAGGTGGCCTGCGTCGCTGTTGAAAGTTACGTTCGGCGACTTCTTTGAC
CAACCTATTGACGGTGTGGCGTGGCCGGCATCACTGAGGGAACTCGCCTT
TGGCCGAGATTTCAGGTTGCCAAAAAAAAGCTTCGAGTGGCCGGCGTCTT
TTCAGCAGCTGACGATAGCCCGCCGGCCCAACGAGCTACTGCCGTCATGG
CCGGGTGTGAGAGTCATTGGAATATGGAGGGCCTACTGGAATAGTTGAAT
GTCGAGAGTCAAGCGGTTTGCTTTCGATGATGGATTCAACGGCGATGTGC
ATGGAGTAGCCTGGCCAGCATCGCTTGAATATCTGATATTCGAAGGTGAT
TGCAATCAGTCTGTGCAAATGGTGGTATGGCCAGTATCGCTGCAGGTGCT
GATATTTTTTGGAGGCGTGACATCTTTCGCCGGAGTTTCATGGCCACCAT
CGCTTCGAAGCTTGATGTTATTCAGCAGCGTACCCAACGAGTCAATTGCC
GGAGCAACCTGGCCCGTGTCGCTCAAATTGCTTTACTTGGGACGTGGCTT
TAATCAGCCTATCGACACGGTAGCCTGGCCCCCTTCATTGAAAAAATTGC
ATCTTGGTTCTGACTTCATTCAGCCCATCGCCGGTGTGAAGTGGCCTGCT
TCTCTGCAGCAACTGTCGCTTGATGGTAACTTCCGGCATCTAGCCGGTGA
TATCACATGGCCAGCGTCCCTCCAACAGCTCACGCTCGGGTCAGTATTCA
ACCAGCCCATCACCGGAGCAACGTGGCCCCCATTGCTGCAGCAGCTCACG
TTCGGGTATAAGTTCAACCAGTCTATCGCCGGAGTGACGTGGCCCCCATC
CCTGCAGCAGCTCACGTTCGGGGATAGATTCGACCAGCCTATCGCCAAAG
CAACATGGCCACCATCTCTTCAGCGACTAAGGTTCAACGTAAAGTTCAAC
CAGCCTCTCGCCGACGTCTCTTGGCCAGACTCTCTGCAAGAAATCACCTT
CAGCGGCGACGTGGAAATGCACTCCTGGCTCCACGATGGCAAGTTGTTCG
TAGGTGAACGTGAAATGCTGTCAAACTTCAACCAGCCCATCACGGAGGTC
AGGTGGCCTGCGTCGCTGTTGAAAGTTACGTTCGGCGACTTCTTTGACCA
ACCTATTGACGGTGTGGCGTGGCCGGCATCACTGAGGGAACTCGCCTTTG
GCCGAGATTTCAGGTTGCCAAAAAAAAGCTTCGAGTGGCCGGCGTCTTTT
CAGCAGCTGACGATAGCCCGCCGGCCCAACGAGCTACTGCCGTCATGGCC
GGGTGTGAGAGTCATTGGAATATGGAGGGCCTACTGGAATAGTTGA
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