mRNA_L-elsbetiae_contig9394.18388.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9394.18388.1
Unique NamemRNA_L-elsbetiae_contig9394.18388.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: D8LF76_ECTSI (Carbohydrate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF76_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.910e-42
Identity = 88/129 (68.22%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLM---TGGGG-----------------------DGADVVTSGNAFAASPFLRQVLADSLGRTVRASGVTEETSLGVAVL 309
            +LPFFSGERSPGYNDDATAC+ GLRRSTTR QLVRAGLESVCLRLAA+VDLM   T GG                        + A+VVTSGNAFAASPF R++LADSLGRTVRASG TEETSLGVAV+
Sbjct:  474 VLPFFSGERSPGYNDDATACIFGLRRSTTRPQLVRAGLESVCLRLAAIVDLMKDLTDGGSMKGSSSSEHEPEASSAGALVRDHEDAEVVTSGNAFAASPFWRKMLADSLGRTVRASGATEETSLGVAVI 602          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: A0A6H5L722_9PHAE (FGGY_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L722_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.140e-41
Identity = 87/129 (67.44%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLM---TGGGG-----------------------DGADVVTSGNAFAASPFLRQVLADSLGRTVRASGVTEETSLGVAVL 309
            +LPFFSGERSPGYNDDATAC+ GLRRSTTR QLVRAGLESVCLRLA +VDLM   T GG                        + A+VVTSGNAFAASPF R++LADSLGRTVRASG TEETSLGVAV+
Sbjct:  989 VLPFFSGERSPGYNDDATACIFGLRRSTTRPQLVRAGLESVCLRLAVIVDLMKDLTDGGSMKGSSSNEHEPETFSAGALVRDHEDAEVVTSGNAFAASPFWRKILADSLGRTVRASGATEETSLGVAVI 1117          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: A0A3D5G0S2_9CHLR (FGGY_C domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A3D5G0S2_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 4.650e-23
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRTVRASGVTEETSLGVAVL 309
            +LPF  GERSPG+ DDAT  V+GLR ST+  ++VRAGLESV  R A + D ++G    G ++V  G A  +SP   Q+ AD LGRTV  SG  E TS G A+L
Sbjct:   44 VLPFLRGERSPGWLDDATGAVIGLRASTSPVEIVRAGLESVAYRFALIADRLSGVVSPGPEIVVGGGAAQSSPTWLQMFADVLGRTVVESGEPETTSRGGAIL 146          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: A0A2E9TD61_9CHLR (Carbohydrate kinase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2E9TD61_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 1.610e-21
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRTVRASGVTEETSLGVAVL 309
            +LPF  GERSPG+ DDAT  V+GLR ST+  ++VRAGLESV  R A + D ++G    G ++V  G A  +SP   Q+ AD LGRTV  SG  E TS G A+L
Sbjct:  346 VLPFLRGERSPGWLDDATGAVIGLRASTSPVEIVRAGLESVAYRFALIADRLSGVVSPGPEIVVGGGAAQSSPTWLQMFADVLGRTVVESGEPETTSRGGAIL 448          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: A0A800EVQ5_9CHLR (Carbohydrate kinase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A800EVQ5_9CHLR)

HSP 1 Score: 91.7 bits (226), Expect = 1.820e-19
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRTVRASGVTEETSLGVAVL 309
            +LPF  GERSPG+ DDAT  V+GLR ST+  ++VRAGLESV  R A + D ++     G ++V  G A  +SP   Q+ AD L RTV  SG  E TS G A+L
Sbjct:  344 VLPFLRGERSPGWLDDATGAVVGLRASTSPVEIVRAGLESVAFRFALIADRLSTVVTPGPEIVVGGGAAQSSPTWLQMFADVLDRTVVESGEAEATSRGSAIL 446          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: A0A4D9DA94_9STRA (FGGY_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA94_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.100e-18
Identity = 53/103 (51.46%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRTVRASGVTEETSLGVAVL 309
            ILPF SGER+PG+  +ATA +LGL + TT A + RAG+E+V LRLAA+V LM    G    V  SG A   S   RQ+LAD+LG  V      E TS GVA L
Sbjct:  368 ILPFLSGERAPGWCPNATASILGLTKQTTGADVYRAGMEAVALRLAAIVRLMRPHLGQNLVVGASGTALERSGLWRQILADALGLEVVLEEQGEATSKGVAAL 470          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: W7U236_9STRA (Carbohydrate kinase fggy n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U236_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.500e-18
Identity = 53/103 (51.46%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRTVRASGVTEETSLGVAVL 309
            ILPF SGER+PG+  +ATA +LGL + TT A + RAG+E+V LRLAA+V LM    G    V  SG A   S   RQ+LAD+LG  V      E TS GVA L
Sbjct:  517 ILPFLSGERAPGWCPNATASILGLTKQTTGADVYRAGMEAVALRLAAIVRLMRPHLGQNLVVGASGTALERSGLWRQILADALGLEVVLEEQGEATSKGVAAL 619          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: A0A485KQ82_9STRA (Aste57867_10100 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ82_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.850e-16
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRTVRA-SGVTEETSLGVAV 306
            ILPFF+GER+PG+++DAT  + G++ STT   ++RA +ESV LRLA +  L        A +V+SG A  +SP  RQ++AD +GR V   +   E TS G+A+
Sbjct:  395 ILPFFNGERAPGWHEDATCVISGIKISTTPVHMLRALMESVALRLATIHALFGNVASPNAVLVSSGTALGSSPLWRQIIADCIGRPVWIETDAIELTSRGIAI 497          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: H3HD73_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HD73_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 2.640e-16
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRT-VRASGVTEETSLGVAVL 309
            +LPF SGER+PG+ ++AT  + G+ + TT  + +RAG+ES+ LR+  +  L+       A VV SG A  +SP  RQ++AD LG+  +  +  TE TS G+AVL
Sbjct:  683 VLPFLSGERAPGWLENATCTITGINKWTTPIEFLRAGMESIALRIGVLFSLLAFSADLDATVVVSGTALTSSPVWRQMIADCLGKKLILEASATETTSRGLAVL 786          
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Match: A0A8K1CBP2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBP2_PYTOL)

HSP 1 Score: 82.4 bits (202), Expect = 3.500e-16
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVDLMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRTVRA-SGVTEETSLGVAV 306
            +LPF SGER+PG++D+AT  ++G+ + T    L++AG+E+V LR+A V  L+       A V+ SG A  +S   RQ+LAD +GR +   +  TE TS GVAV
Sbjct:  431 VLPFLSGERAPGWHDEATCTIMGINKWTKPVDLLQAGMEAVALRIALVFSLLAEYADSDAAVIASGTALTSSKTWRQMLADCIGRELAMETHATEATSRGVAV 533          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9394.18388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF76_ECTSI2.910e-4268.22Carbohydrate kinase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5L722_9PHAE1.140e-4167.44FGGY_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A3D5G0S2_9CHLR4.650e-2351.46FGGY_C domain-containing protein n=1 Tax=Dehalococ... [more]
A0A2E9TD61_9CHLR1.610e-2151.46Carbohydrate kinase n=2 Tax=Chloroflexi TaxID=2007... [more]
A0A800EVQ5_9CHLR1.820e-1949.51Carbohydrate kinase n=1 Tax=Dehalococcoidia bacter... [more]
A0A4D9DA94_9STRA8.100e-1851.46FGGY_C domain-containing protein n=1 Tax=Nannochlo... [more]
W7U236_9STRA8.500e-1851.46Carbohydrate kinase fggy n=1 Tax=Nannochloropsis g... [more]
A0A485KQ82_9STRA1.850e-1644.66Aste57867_10100 protein n=1 Tax=Aphanomyces stella... [more]
H3HD73_PHYRM2.640e-1642.31Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8K1CBP2_PYTOL3.500e-1643.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9394contigL-elsbetiae_contig9394:317..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue5.6e-36
Seed eggNOG ortholog2880.D8LF76
KEGG rclassRC00002,RC00017
KEGG koko:K00851
KEGG ReactionR01737
KEGG Pathwayko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glycerol kinase activity
EggNOG OGsCOG0554@1,KOG2517@2759
EC2.7.1.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptioncarbohydrate kinase
Ec32 orthologEc-06_001950.1
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.247766-CDS-L-elsbetiae_contig9394:316..4891622817008.247766-CDS-L-elsbetiae_contig9394:316..489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9394 317..489 +
1691683978.9966476-CDS-L-elsbetiae_contig9394:316..4891691683978.9966476-CDS-L-elsbetiae_contig9394:316..489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9394 317..489 +
1622817008.262046-CDS-L-elsbetiae_contig9394:561..6971622817008.262046-CDS-L-elsbetiae_contig9394:561..697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9394 562..697 +
1691683979.0129654-CDS-L-elsbetiae_contig9394:561..6971691683979.0129654-CDS-L-elsbetiae_contig9394:561..697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9394 562..697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9394.18388.1prot_L-elsbetiae_contig9394.18388.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9394 317..697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9394.18388.1

>prot_L-elsbetiae_contig9394.18388.1 ID=prot_L-elsbetiae_contig9394.18388.1|Name=mRNA_L-elsbetiae_contig9394.18388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
ILPFFSGERSPGYNDDATACVLGLRRSTTRAQLVRAGLESVCLRLAAVVD
LMTGGGGDGADVVTSGNAFAASPFLRQVLADSLGRTVRASGVTEETSLGV
AVL
back to top

mRNA from alignment at L-elsbetiae_contig9394:317..697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9394.18388.1 ID=mRNA_L-elsbetiae_contig9394.18388.1|Name=mRNA_L-elsbetiae_contig9394.18388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=381bp|location=Sequence derived from alignment at L-elsbetiae_contig9394:317..697+ (Laminarionema elsbetiae ELsaHSoW15)
ATCTTGCCCTTCTTTTCCGGAGAACGCTCTCCGGGGTACAACGACGACGC GACGGCGTGTGTCCTCGGCCTGCGCCGTTCCACCACGCGGGCACAGCTCG TGCGCGCGGGGCTAGAGTCCGTCTGCCTGAGGCTCGCCGCCGTCGTAGAT CTCATGACGGGTGGAGGCGGCGAGTGCGCCGGCGGCGAGTGCGACGGCGG GGGTGGGGGTGGAGGCAGCGACCCGTTCCCGCGGCGGAGTCGCAGCGGCG CGGACGTGGTGACGAGCGGCAACGCTTTCGCGGCGTCGCCTTTCCTGCGA CAAGTGCTGGCGGATTCTCTCGGGAGGACGGTCCGCGCGTCCGGCGTGAC GGAGGAAACGTCCCTCGGCGTAGCCGTCCTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9394:317..697+

>mRNA_L-elsbetiae_contig9394.18388.1 ID=mRNA_L-elsbetiae_contig9394.18388.1|Name=mRNA_L-elsbetiae_contig9394.18388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig9394:317..697+ (Laminarionema elsbetiae ELsaHSoW15)
ATCTTGCCCTTCTTTTCCGGAGAACGCTCTCCGGGGTACAACGACGACGC
GACGGCGTGTGTCCTCGGCCTGCGCCGTTCCACCACGCGGGCACAGCTCG
TGCGCGCGGGGCTAGAGTCCGTCTGCCTGAGGCTCGCCGCCGTCGTAGAT
CTCATGACGGGTGGAGGCGGCGAATCTTGCCCTTCTTTTCCGGAGAACGC
TCTCCGGGGTACAACGACGACGCGACGGCGTGTGTCCTCGGCCTGCGCCG
TTCCACCACGCGGGCACAGCTCGTGCGCGCGGGGCTAGAGTCCGTCTGCC
TGAGGCTCGCCGCCGTCGTAGATCTCATGACGGGTGGAGGCGGCGACGGC
GCGGACGTGGTGACGAGCGGCAACGCTTTCGCGGCGTCGCCTTTCCTGCG
ACAAGTGCTGGCGGATTCTCTCGGGAGGACGGTCCGCGCGTCCGGCGTGA
CGGAGGAAACGTCCCTCGGCGTAGCCGTCCTTCGGCGCGGACGTGGTGAC
GAGCGGCAACGCTTTCGCGGCGTCGCCTTTCCTGCGACAAGTGCTGGCGG
ATTCTCTCGGGAGGACGGTCCGCGCGTCCGGCGTGACGGAGGAAACGTCC
CTCGGCGTAGCCGTCCTT
back to top