mRNA_L-elsbetiae_contig9384.18379.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9384.18379.1
Unique NamemRNA_L-elsbetiae_contig9384.18379.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9384.18379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9384contigL-elsbetiae_contig9384:546..969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817007.7371485-CDS-L-elsbetiae_contig9384:545..8661622817007.7371485-CDS-L-elsbetiae_contig9384:545..866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9384 546..866 +
1691683978.6935868-CDS-L-elsbetiae_contig9384:545..8661691683978.6935868-CDS-L-elsbetiae_contig9384:545..866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9384 546..866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817007.7473433-UTR-L-elsbetiae_contig9384:866..9691622817007.7473433-UTR-L-elsbetiae_contig9384:866..969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9384 867..969 +
1691683978.7108138-UTR-L-elsbetiae_contig9384:866..9691691683978.7108138-UTR-L-elsbetiae_contig9384:866..969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9384 867..969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9384.18379.1prot_L-elsbetiae_contig9384.18379.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9384 546..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9384.18379.1

>prot_L-elsbetiae_contig9384.18379.1 ID=prot_L-elsbetiae_contig9384.18379.1|Name=mRNA_L-elsbetiae_contig9384.18379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
CRLTKESGLERTPIACSTADFARPAAAVLAADDRVTSPPAKSNSNTWSDA
AVSKSSSCNCAVSGDDSGGSTTYSEHGGRRRFSGSTSDGSWTSPSGRCRT
LALRTL*
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mRNA from alignment at L-elsbetiae_contig9384:546..969+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9384.18379.1 ID=mRNA_L-elsbetiae_contig9384.18379.1|Name=mRNA_L-elsbetiae_contig9384.18379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=424bp|location=Sequence derived from alignment at L-elsbetiae_contig9384:546..969+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCGTCTCACGAAGGAATCGGGCTTGGAAAGAACGCCGATCGCCTGCTC
TACTGCCGATTTCGCCAGGCCTGCCGCAGCCGTGCTTGCTGCGGACGACC
GCGTGACTTCCCCCCCTGCAAAAAGCAACTCCAACACGTGGTCGGATGCG
GCTGTGTCCAAAAGTAGCAGCTGCAACTGCGCTGTCTCCGGAGACGATTC
CGGAGGATCCACGACCTACAGCGAGCACGGCGGACGCCGGAGGTTCTCCG
GGAGCACCTCCGACGGCAGCTGGACGTCGCCTAGCGGCCGGTGCCGGACA
TTGGCCTTGCGTACCCTGTGACTGCGACGCAGGGGTTGAGTATCCGACTG
ACACGCGTCAACTGAGGGTAGTTCATTGAAGTCGCGAAGCGCTGCCAGGA
CCTCTTCGTTGGGCTGGACCTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9384:546..969+

>mRNA_L-elsbetiae_contig9384.18379.1 ID=mRNA_L-elsbetiae_contig9384.18379.1|Name=mRNA_L-elsbetiae_contig9384.18379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig9384:546..969+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCGTCTCACGAAGGAATCGGGCTTGGAAAGAACGCCGATCGCCTGCTC
TACTGCCGATTTCGCCAGGCCTGCCGCAGCCGTGCTTGCTGCGGACGACC
GCGTGACTTCCCCCCCTGCAAAAAGCAACTCCAACACGTGGTCGGATGCG
GCTGTGTCCAAAAGTAGCAGCTGCAACTGCGCTGTCTCCGGAGACGATTC
CGGAGGATCCACGACCTACAGCGAGCACGGCGGACGCCGGAGGTTCTCCG
GGAGCACCTCCGACGGCAGCTGGACGTCGCCTAGCGGCCGGTGCCGGACA
TTGGCCTTGCGTACCCTGTGATGCCGTCTCACGAAGGAATCGGGCTTGGA
AAGAACGCCGATCGCCTGCTCTACTGCCGATTTCGCCAGGCCTGCCGCAG
CCGTGCTTGCTGCGGACGACCGCGTGACTTCCCCCCCTGCAAAAAGCAAC
TCCAACACGTGGTCGGATGCGGCTGTGTCCAAAAGTAGCAGCTGCAACTG
CGCTGTCTCCGGAGACGATTCCGGAGGATCCACGACCTACAGCGAGCACG
GCGGACGCCGGAGGTTCTCCGGGAGCACCTCCGACGGCAGCTGGACGTCG
CCTAGCGGCCGGTGCCGGACATTGGCCTTGCGTACCCTGTGA
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