mRNA_L-elsbetiae_contig937.18368.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: A0A6H5JE11_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE11_9PHAE) HSP 1 Score: 525 bits (1352), Expect = 1.540e-170 Identity = 407/825 (49.33%), Postives = 461/825 (55.88%), Query Frame = 1 Query: 232 SSTHPLVPATRGLGLGSLSSRALFARASSGASRLALPSSPSVTPGVGSADTYRGRNVPRGSSLSLSLXXXXXXXXXXXXXXQHPLAGYPLRVPARHAGSGGRADGGRPSVHRLASGGREAWRAPAAAYNAAERRTGRDNTALRAVSARLDAAATAIDAVEIGVRSASDSLDSLLQLLESR--PASAVTPGATTSNRXXXXXXXXXXXXXXXXXXXEASFSMAGAVPGDLSGDISA-SPRSAV------------------------------------------ASREAAPLISARGAEAGGGLRAANMLRRELIVSLPPPADHSQTEEQVNADEQNRGTVSHSISHRADSSAAEDPAATRDALVGEAKEEPTRPARLGERSNPVCASPHLAPSPRRQEIVEEPTSSTT-------------IQGQATRGHH-----GIGTVARSAPTTRAS----GEDGGD--HGPPRSSQSSESTRPSPRAVRAAGSNTSLSATEV---ETETNRDSSLPLLELEVAMSGIDAERGRLVLEIARLRGQQNQSLVQLQRLQHEQFIVRQRQVSTLSDIVNSFGRTVEAAGALPHGEDSSLGRISNDVVSTLRRMLRLLSATVPSDATAPGARSTSPTL---ASLPPSTXXXXXXXXXXXXXXRSGSAASSTGTYSVGGRIALRPTGGDLTQEVIDAALQALPRLAAAATAISGARRVQGYLAGL-GGGTPDAPDER-----RSCSKETIAALPDAPPYATGVVGGASDSGGVRGCVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSMQDSCPTCRSQVPNVKIGSPAPTSTP 2463 SST P+VP RGL L SL R L ARAS+ S L P PG G ADT R R+ P HP A YPLRVP RH GR+DGGR S+ RLA GGR+AWR AY+A R TGRD TALRAVSARLDAA+TAIDAVEIGVRSASDSLDSLLQLLESR PA + T ++TS E + A + +G +S SPRS+V A+R+ AP++ AR E GGG RAA MLRRE L ++ E S ++ R D A E AT D + E EE + R G+ A P SP QE+VEE SS + G AT G H GIG +APT A+ G D + PRS + + S R SPR + GS + S E ET + +LP+ EL +GID ERGRL+LEIARLRGQQNQSLV L RLQHEQF+VRQRQVSTLSDIVNSFGRTV AA ALPHGEDSSLGRIS+DVVSTLRRMLRLLSATVP+ A A SP L +S+ T A+ S GTYSVGGR+ALRP G DLTQEVIDAALQALPRLAAAATAISGA R+QGYLA L GGGT D R CSKETIAALPDA G VG D G VRGCVICLSE+ T + LCRLPC+HVFHR CVGKWLSMQDSCPTCR QVPNV+IGS T+ P Sbjct: 2 SSTRPVVPTARGLELQSLIPRTLSARAST--SSLFTP-----LPGAGLADTPRSRSPPSSXXXXXXXQQDRQ---------NHPTA-YPLRVPNRH----GRSDGGRASIRRLAGGGRDAWRTAPVAYSAVVRGTGRDTTALRAVSARLDAASTAIDAVEIGVRSASDSLDSLLQLLESRHGPAVSQTSLSSTSAEVDAFENGSADPGPSSRGIGEGGRAAASSDSQASAGAMSMRSPRSSVSPPAVSLPTSSGLMVGASSSESPRDEFNVSTPPPQPMGPPRYANRDGAPIV-ARVPEGGGGSRAAIMLRREQQAGLTAFSNPEAGEHLCR---------SPAVLPRQDGGAQEGSVATGDTSIDETNEEHSTRTRSGQHLTSALALPRPVSSPAVQELVEEVNSSRRTAERETSESHGVGMAGSATAGQHLPADIGIGGTMEAAPTDLAALRMLGSDRTTSLNSVPRSVREAGSRRASPRGMEGTGSGAASSTRETYAGETSGRGNVALPVREL----NGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAAALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQLAPGNSPVLTTTSSVSDGTPPPAPNTPRPTAVREGQVASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGTSDTVGRGSDYTGRCCSKETIAALPDASQPVEGAVGEV-DGGDVRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATTAP 790
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: D7FQ33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ33_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 1.150e-137 Identity = 298/541 (55.08%), Postives = 331/541 (61.18%), Query Frame = 1 Query: 949 ASREAAPLISARGAEAGGGLRAANMLRRELIVSLPPPADHSQTEEQVNADEQNRGTVSHSISHRADSSAAEDPAATRDALVGEAKEEPTRPARLGERSNPVCASPHLAPSPRRQEIVEEPTSSTT-------------IQGQATRGHH-----GIGTVARSAPTTRASGED-GGDHGP-----PRSSQSSESTRPSPRAVRAAGSNTSLSATEV---ETETNRDSSLPLLELEVAMSGIDAERGRLVLEIARLRGQQNQSLVQLQRLQHEQFIVRQRQVSTLSDIVNSFGRTVEAAGALPHGEDSSLGRISNDVVSTLRRMLRLLSATVPSDATAPGARSTSPTLA--SLPPSTXXXXXXXXXXXXXXRSGSAAS-STGTYSVGGRIALRPTGGDLTQEVIDAALQALPRLAAAATAISGARRVQGYLAGLGGGTPDAPDERRS------CSKETIAALPDAPPYATGVVGGASDSGGVRGCVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSMQDSCPTCRSQVPNVKIGSPAPTSTP 2463 A+R+ AP++ AR E GGG RAA+MLRRE L ++ E R T + R D A E AT DA + E EE + R G+ A P SP QE+VEE SS + G AT G H IG +APT A+ G D P PR + + S R SPR + GS + S E ET D +LP+ ELE AM+GID ERGRL+LEIARLRGQQNQSLV L RLQHEQF+VRQRQVSTLSDIVNSFGRTV AAGALPHGEDSSLGRIS+DVVSTLRRMLRLLSATVP+ A A SP L S P R G AAS S GTYSVGGR+ALRP G DLTQEVIDAALQALPRLAAAATAISGA R+QGYLA L GG RRS CSKETIAALPDA G VG D GGVRGCVICLSE+ T + LCRLPC+HVFHR CVGKWLSMQDSCPTCR QVPNV+IGS T+ P Sbjct: 29 ANRDGAPIV-ARVPEGGGGSRAASMLRREQQAGLTTFSNPEAGEHLC------RSTA---VLPRQDGGAQESSVATGDASIDETNEEHSTRTRSGQHLTSALALPRPVSSPAAQELVEEVNSSRRTAERETSESHGVGMAGSATAGQHLPADIDIGGTMEAAPTDLAALRTLGSDRTPSLDSGPRLVREAGSRRASPRGMEGTGSGAASSTREANAGETSGRGDMALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAPGNSPVLTTTSSVPDGAPPPAPNAPRPAAVREGQAASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGEASDTAGRRSDYTGRCCSKETIAALPDASQPVEGAVGEV-DGGGVRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATTAP 558
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: UPI001EEB320E (E3 ubiquitin-protein ligase MPSR1-like isoform X2 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEB320E) HSP 1 Score: 57.8 bits (138), Expect = 4.650e-7 Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 Query: 2284 CVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSMQDSCPTCRSQV 2421 CVIC E+ TE RLPC+H FH C+GKWL +Q +CPTCR V Sbjct: 15 CVICF-EEFITEYGCKRLPCNHKFHSQCIGKWLLVQKTCPTCRKNV 59
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: I1H503_BRADI (RING-type domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1H503_BRADI) HSP 1 Score: 59.7 bits (143), Expect = 6.690e-7 Identity = 36/91 (39.56%), Postives = 45/91 (49.45%), Query Frame = 1 Query: 2284 CVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSMQDSCPTCRSQVPNVKIGSPAPTSTPVV*VMICAPLR-EWCDLVHQPRMRVALCDFG 2553 C ICL+ D ++ LPC H FHR CVGKWL + +CPTCR Q+P + SPA + LR W V R + AL G Sbjct: 59 CAICLAADDQRKKA--ELPCGHRFHRGCVGKWLRVHGTCPTCRHQLPPM---SPAARND----------LRYSWFLAVEDLRKKAALLGLG 134
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: A0A0E0N2L1_ORYRU (RING-type domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0N2L1_ORYRU) HSP 1 Score: 60.8 bits (146), Expect = 1.860e-6 Identity = 34/84 (40.48%), Postives = 42/84 (50.00%), Query Frame = 1 Query: 2170 APDERRSCSKETIAALPDAPPYATGVVGGASDSGGVRGCVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSMQDSCPTCRSQV 2421 AP ++ IAALP A A G V G +GG C ICL + + C HVFH AC+ KWL+ SCP CR+ V Sbjct: 82 APPKQVGLDPSAIAALPTA---AYGKVAGGDAAGGTTECAICLGAMQEADAVRVLPACRHVFHVACIDKWLASSSSCPVCRAGV 162
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: UPI001EECD42C (E3 ubiquitin protein ligase RIE1-like isoform X1 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EECD42C) HSP 1 Score: 57.8 bits (138), Expect = 2.030e-6 Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 Query: 2284 CVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSMQDSCPTCRSQV 2421 CVIC E+ TE RLPC+H FH C+GKWL +Q +CPTCR V Sbjct: 71 CVICF-EEFITEYGCKRLPCNHKFHSQCIGKWLLVQKTCPTCRKNV 115
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: A0A833VGC1_9POAL (E3 ubiquitin-protein ligase RING1-like protein n=2 Tax=Carex littledalei TaxID=544730 RepID=A0A833VGC1_9POAL) HSP 1 Score: 60.5 bits (145), Expect = 3.150e-6 Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1 Query: 2284 CVICLSEDSTTEEL-LCRLPCDHVFHRACVGKWLSMQDSCPTCRSQVP 2424 CVIC+ E T +E + +LPCDH+FH+ C+G WLS ++CP CR ++P Sbjct: 201 CVICMDEMCTQDEAEITKLPCDHLFHKNCIGLWLSSNNTCPLCRFKLP 248
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: W4FD02_9STRA (RING-type domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD02_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 3.200e-6 Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 Query: 2284 CVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSMQDSCPTCRSQ 2418 CV+C++ +++ E L+ LPC H+FH AC+G WL ++ +CPTCR Q Sbjct: 78 CVVCMNPNNSDESLV--LPCGHIFHEACIGSWLRLRSTCPTCRYQ 120
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: A0A169WTZ9_DAUCS (RING-type E3 ubiquitin transferase n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A169WTZ9_DAUCS) HSP 1 Score: 58.5 bits (140), Expect = 4.550e-6 Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 1 Query: 2284 CVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSMQDSCPTCRSQVP---NVKIGSPAPTSTPVV 2469 C +CL E EELL C H+FHR C+G WLS ++CP CRS V N ++ P +P V Sbjct: 104 CCVCLGEFEMKEELLQVPSCQHIFHRDCIGNWLSSSNTCPLCRSVVEIVDNTRLVLPPSQRSPAV 168
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Match: A0A8B8LA52_ABRPR (E3 ubiquitin-protein ligase RHA1B-like n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LA52_ABRPR) HSP 1 Score: 57.8 bits (138), Expect = 6.530e-6 Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 2230 PYAT-GVVGGASDSGGVRGCVICLSEDSTTEELLCRLPCDHVFHRACVGKWLSM-QDSCPTCRSQ-VPNVKI 2436 P AT GVV G S + C +CLSE EE+ C C H+FHRACV +W+ Q +CP CR+ VP+ K+ Sbjct: 75 PVATYGVVAGDSPA---AACAVCLSEFWAEEEIRCMANCKHIFHRACVDRWIDHDQKTCPLCRTPFVPHHKV 143 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig937.18368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig937.18368.1 >prot_L-elsbetiae_contig937.18368.1 ID=prot_L-elsbetiae_contig937.18368.1|Name=mRNA_L-elsbetiae_contig937.18368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=763bp MSRSISSRSRRAASMSSSTHPLVPATRGLGLGSLSSRALFARASSGASRLback to top mRNA from alignment at L-elsbetiae_contig937:4685..7457+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig937.18368.1 ID=mRNA_L-elsbetiae_contig937.18368.1|Name=mRNA_L-elsbetiae_contig937.18368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2773bp|location=Sequence derived from alignment at L-elsbetiae_contig937:4685..7457+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig937:4685..7457+ >mRNA_L-elsbetiae_contig937.18368.1 ID=mRNA_L-elsbetiae_contig937.18368.1|Name=mRNA_L-elsbetiae_contig937.18368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4578bp|location=Sequence derived from alignment at L-elsbetiae_contig937:4685..7457+ (Laminarionema elsbetiae ELsaHSoW15)back to top |