mRNA_L-elsbetiae_contig9366.18362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9366.18362.1
Unique NamemRNA_L-elsbetiae_contig9366.18362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9366.18362.1 vs. uniprot
Match: A0A6H5KNG5_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.320e-7
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   64 AAGSSSGDASGPVREVFCRVLPQPPVLPAADTIMVALKTAKLHDGDGSVGTLPEALGLMYGGVHVVY 264
            AAG  SG  SG + EVFCR LP   +   +  +  A  TA   D +G V  L EALGL+YGGVHVV+
Sbjct:   92 AAGGPSGQGSGQIIEVFCRSLPLLRMSATSPALRTATATADRSDANGVVDALREALGLIYGGVHVVH 158
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BLAST of mRNA_L-elsbetiae_contig9366.18362.1 vs. uniprot
Match: D8LHG8_ECTSI (BEACH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.600e-6
Identity = 38/81 (46.91%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:   25 RGSEVDRAGSSLSAAGSS-SGDASGPVREVFCRVLPQPPVLPAADTIMVALKTAKLHDGDGSVGTLPEALGLMYGGVHVVY 264
            R S  +  G S+SAA S  S   SG + EVFCR LP      A+  +  A  TA   D  G V  L EALGL+YGGVHVV+
Sbjct:   77 RRSSENPCGRSVSAAASGPSEQGSGHITEVFCRSLPLLRTPAASPALRTATATADRSDAHGVVDALREALGLIYGGVHVVH 157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9366.18362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNG5_9PHAE1.320e-749.25BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LHG8_ECTSI1.600e-646.91BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9366contigL-elsbetiae_contig9366:5296..5561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size268
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817006.0114584-CDS-L-elsbetiae_contig9366:5295..55591622817006.0114584-CDS-L-elsbetiae_contig9366:5295..5559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9366 5296..5559 +
1691683977.358326-CDS-L-elsbetiae_contig9366:5295..55591691683977.358326-CDS-L-elsbetiae_contig9366:5295..5559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9366 5296..5559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9366.18362.1prot_L-elsbetiae_contig9366.18362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9366 5296..5559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9366.18362.1

>prot_L-elsbetiae_contig9366.18362.1 ID=prot_L-elsbetiae_contig9366.18362.1|Name=mRNA_L-elsbetiae_contig9366.18362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
EDLQRRGIRGSEVDRAGSSLSAAGSSSGDASGPVREVFCRVLPQPPVLPA
ADTIMVALKTAKLHDGDGSVGTLPEALGLMYGGVHVVY
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mRNA from alignment at L-elsbetiae_contig9366:5296..5561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9366.18362.1 ID=mRNA_L-elsbetiae_contig9366.18362.1|Name=mRNA_L-elsbetiae_contig9366.18362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=266bp|location=Sequence derived from alignment at L-elsbetiae_contig9366:5296..5561+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGACCTACAACGGCGTGGCATCAGGGGTAGCGAGGTCGATCGTGCAGG
TAGCTCTCTGTCTGCTGCTGGAAGTTCTTCTGGGGATGCTTCTGGACCGG
TCAGAGAAGTATTCTGCCGTGTGCTGCCTCAGCCGCCGGTGTTGCCTGCT
GCAGACACCATCATGGTTGCTTTGAAAACCGCCAAGCTACACGACGGCGA
CGGCTCTGTGGGCACGCTGCCAGAAGCGCTAGGGCTCATGTACGGGGGTG
TTCATGTTGTTTACTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9366:5296..5561+

>mRNA_L-elsbetiae_contig9366.18362.1 ID=mRNA_L-elsbetiae_contig9366.18362.1|Name=mRNA_L-elsbetiae_contig9366.18362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig9366:5296..5561+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGACCTACAACGGCGTGGCATCAGGGGTAGCGAGGTCGATCGTGCAGG
TAGCTCTCTGTCTGCTGCTGGAAGTTCTTCTGGGGATGCTTCTGGACCGG
TCAGAGAAGTATTCTGCCGTGTGCTGCCTCAGCCGCCGGTGTTGCCTGCT
GCAGACACCATCATGGTTGCTTTGAAAACCGCCAAGCTACACGACGGCGA
CGGCTCTGTGGGCACGCTGCCAGAAGCGCTAGGGCTCATGTACGGGGGTG
TTCATGTTGTTTACGAGGACCTACAACGGCGTGGCATCAGGGGTAGCGAG
GTCGATCGTGCAGGTAGCTCTCTGTCTGCTGCTGGAAGTTCTTCTGGGGA
TGCTTCTGGACCGGTCAGAGAAGTATTCTGCCGTGTGCTGCCTCAGCCGC
CGGTGTTGCCTGCTGCAGACACCATCATGGTTGCTTTGAAAACCGCCAAG
CTACACGACGGCGACGGCTCTGTGGGCACGCTGCCAGAAGCGCTAGGGCT
CATGTACGGGGGTGTTCATGTTGTTTAC
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