mRNA_L-elsbetiae_contig9364.18360.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9364.18360.1
Unique NamemRNA_L-elsbetiae_contig9364.18360.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9364.18360.1 vs. uniprot
Match: D7FP56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP56_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.430e-8
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:    2 IFLLDTVGLNWSSFEATGGAGLSGRRCLHTAISVTG 109
            I+LLD VGL WSSF+A GG GLS +RCLHTA+SVTG
Sbjct:   45 IYLLDAVGLIWSSFQAVGGVGLSEQRCLHTAVSVTG 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9364.18360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP56_ECTSI3.430e-875.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9364contigL-elsbetiae_contig9364:6196..6539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817005.8535416-CDS-L-elsbetiae_contig9364:6195..65371622817005.8535416-CDS-L-elsbetiae_contig9364:6195..6537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9364 6196..6537 +
1691683977.2440178-CDS-L-elsbetiae_contig9364:6195..65371691683977.2440178-CDS-L-elsbetiae_contig9364:6195..6537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9364 6196..6537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9364.18360.1prot_L-elsbetiae_contig9364.18360.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9364 6196..6537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9364.18360.1

>prot_L-elsbetiae_contig9364.18360.1 ID=prot_L-elsbetiae_contig9364.18360.1|Name=mRNA_L-elsbetiae_contig9364.18360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
DLLARHRRLELVILRSHRWCWPLRAAVPAHGHLGDWRRRRRKRRRRRRHP
AAATGRPDHIEISLGRRLLFAQRCRGVAANRERQQHRCRRGTDSSRIRSS
SSRRETVGSGGTGR
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mRNA from alignment at L-elsbetiae_contig9364:6196..6539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9364.18360.1 ID=mRNA_L-elsbetiae_contig9364.18360.1|Name=mRNA_L-elsbetiae_contig9364.18360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=344bp|location=Sequence derived from alignment at L-elsbetiae_contig9364:6196..6539+ (Laminarionema elsbetiae ELsaHSoW15)
GATCTTCTTGCTCGACACCGTCGGCTTGAACTGGTCATCCTTCGAAGCCA
CCGGTGGTGCTGGCCTCTCCGGGCGGCGGTGCCTGCACACGGCCATCTCG
GTGACTGGCGAAGACGCAGGAGGAAACGACGACGACGGCGCCGACACCCA
GCAGCCGCAACAGGGAGGCCCGACCACATCGAAATCTCTCTCGGCCGCCG
CCTCCTCTTCGCCCAGCGATGCCGCGGCGTCGCCGCCAACCGAGAGCGAC
AACAACACCGATGTCGTCGCGGCACCGACAGCAGTCGCATCAGGAGTAGT
AGCTCCCGACGTGAGACTGTGGGATCCGGTGGTACCGGCAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9364:6196..6539+

>mRNA_L-elsbetiae_contig9364.18360.1 ID=mRNA_L-elsbetiae_contig9364.18360.1|Name=mRNA_L-elsbetiae_contig9364.18360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig9364:6196..6539+ (Laminarionema elsbetiae ELsaHSoW15)
GATCTTCTTGCTCGACACCGTCGGCTTGAACTGGTCATCCTTCGAAGCCA
CCGGTGGTGCTGGCCTCTCCGGGCGGCGGTGCCTGCACACGGCCATCTCG
GTGACTGGCGAAGACGCAGGAGGAAACGACGACGACGGCGCCGACACCCA
GCAGCCGCAACAGGGAGGCCCGACCACATCGAAATCTCTCTCGGCCGCCG
CCTCCTCTTCGCCCAGCGATGCCGCGGCGTCGCCGCCAACCGAGAGCGAC
AACAACACCGATGTCGTCGCGGCACCGACAGCAGTCGCATCAGGAGTAGT
AGCTCCCGACGTGAGACTGTGGGATCCGGTGGTACCGGCAGGGATCTTCT
TGCTCGACACCGTCGGCTTGAACTGGTCATCCTTCGAAGCCACCGGTGGT
GCTGGCCTCTCCGGGCGGCGGTGCCTGCACACGGCCATCTCGGTGACTGG
CGAAGACGCAGGAGGAAACGACGACGACGGCGCCGACACCCAGCAGCCGC
AACAGGGAGGCCCGACCACATCGAAATCTCTCTCGGCCGCCGCCTCCTCT
TCGCCCAGCGATGCCGCGGCGTCGCCGCCAACCGAGAGCGACAACAACAC
CGATGTCGTCGCGGCACCGACAGCAGTCGCATCAGGAGTAGTAGCTCCCG
ACGTGAGACTGTGGGATCCGGTGGTACCGGCAGG
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