mRNA_L-elsbetiae_contig936.18357.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig936.18357.1
Unique NamemRNA_L-elsbetiae_contig936.18357.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig936.18357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig936contigL-elsbetiae_contig936:25614..28207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size292
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig936.18357.1prot_L-elsbetiae_contig936.18357.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig936 25614..28166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817005.5661743-CDS-L-elsbetiae_contig936:25613..256511622817005.5661743-CDS-L-elsbetiae_contig936:25613..25651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig936 25614..25651 -
1691683977.0446985-CDS-L-elsbetiae_contig936:25613..256511691683977.0446985-CDS-L-elsbetiae_contig936:25613..25651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig936 25614..25651 -
1622817005.5775952-CDS-L-elsbetiae_contig936:27955..281661622817005.5775952-CDS-L-elsbetiae_contig936:27955..28166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig936 27956..28166 -
1691683977.056903-CDS-L-elsbetiae_contig936:27955..281661691683977.056903-CDS-L-elsbetiae_contig936:27955..28166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig936 27956..28166 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817005.5887475-UTR-L-elsbetiae_contig936:28166..282071622817005.5887475-UTR-L-elsbetiae_contig936:28166..28207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig936 28167..28207 -
1691683977.0676367-UTR-L-elsbetiae_contig936:28166..282071691683977.0676367-UTR-L-elsbetiae_contig936:28166..28207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig936 28167..28207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig936.18357.1

>prot_L-elsbetiae_contig936.18357.1 ID=prot_L-elsbetiae_contig936.18357.1|Name=mRNA_L-elsbetiae_contig936.18357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MKAIRGFTLGLQVLLAASAATSQSDIDGIPEVGIGAVHPICDPLQRECIS
SDEQVQDEIIAGLQAEDKVTGTANVIELGELLC
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mRNA from alignment at L-elsbetiae_contig936:25614..28207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig936.18357.1 ID=mRNA_L-elsbetiae_contig936.18357.1|Name=mRNA_L-elsbetiae_contig936.18357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2594bp|location=Sequence derived from alignment at L-elsbetiae_contig936:25614..28207- (Laminarionema elsbetiae ELsaHSoW15)
GACCATAGGAAGCAGCAACCGTTCTAAACAGCAGTAGACGAATGAAAGCC
ATACGAGGCTTTACTCTCGGCTTGCAGGTTCTCCTCGCCGCGTCTGCTGC
CACTTCTCAAAGCGACATCGATGGAATACCTGAGGTTGGCATCGGTGCCG
TGCACCCAATCTGCGATCCCCTCCAGAGGGAATGCATTTCGAGCGACGAA
CAAGTGCAAGACGAGATAATAGCGGGTCTTCAGGCCGAAGACAAGGTTAC
CGGTACGTTCTCATGTCTCTTGCAGTTGCCATGCATACTCTAATTAATCC
CCCCCATAAGTAGAGCGCACCGCTTCTGTGAAGATCTCTCGTGCTTTTAT
GCATCTAGGTCAGGACTCTTTCGGCGCCACAGTGATTCCGTTTGGCCTGT
ATCGGGGCATCATGCACGGGTTCGCTCGAAAGTACGCTACTATGTGCAAC
AGTATGTCGCAGAACCTGATAATGTCCGTGCCCGTAGCTGAAACCTTCAC
CCTCCCCACAACAGCTGTGCTCAATACGGCCCATACGAGTCCAAAAGGAC
CAATAAGGCTCCATTCAAGAGCACAGAGAGATGATGCGTCCTGCGCGTAG
AGTAGTAGTAGTTCCGTACTTTAATCATGAACGGTGTCGTGGAACAGTCA
AAAGGGCGCGTAAAGCAAGAACGAGTTGGTGGTTCTGTTACCCAACCAAA
CTAGATTGGCAACCAATAAAATATACTCGATTGACAAGGTGCTTGAGCCA
AGAGTGCCGAGGAAGTGCCACAAATCGATCACGATATACCACCTCTGTAT
TGATGCCACCTGACACAATGTTTTCTTCGCCGTATATCAGTCAGGGCCGC
ACATCTTAAAAATGTAGTTACGCCCCTGCGCAAATATTACGGAAACGCGC
GGTGGAAAACACCCCGGGCTCGCTTGAATCTTTCACGTGTGGAGTCAGAC
ACCACGGGGTCGAGGACACGATGAGTCTACTCCGATAGTACAAATTGGTA
TTGTTGACGAAAATGACAAACGGCGTGCGCACAGAAACTATTTTATGAAC
ATTTCGATGTCATGATATACGGAGCCACTAAACCAAGGGTGGGCGGGTAA
GGTTCATTTGCGGCAGGATTGCCCCAGTTGCAACTGTTCCTAATTTATGT
TGGACAATACCGTGTACAGTGCGTTGAGTCCCCCTCGGGAAAGGTGCTGT
TTTGTTTGTAAAGTTCCGGTACCTCAGGCACGACACGAACAAGGACGACT
GAAAGCACCCCGGGGAGGGGGTAGAAGTAGAAATACATAGCCGCCGCACA
CTGCCTTTGTCACATAAGCCGCTCCGCGATGTCGAACATAGCCAGGATCT
GCAAACTGAAAATCAATAGTGGGCATGGCGTGTTCCGTCCTGAGAGTGCT
CTATGATATAAGCCGTCGCCTGAAACACAAGCGAAACAAGCAAACAACGA
TTGAAAACATGAAAGGGGCACAAGCAGCTCGGGGGGGGCACATGATAAAT
GTTTGAACTCGGGGAGGAATTTAAGGGTGCGGTGAGGGGTACCCATCGAG
ATCAGTATAAGACTTTCGCGAAAAATAGTCGCATACCCGCTATGAACATC
GCAGAGCCTCTGTTGAAATTTGTGCAGGCGTTCCAAAGCCACCCGCGTGT
TCTGACCGTCCTGACCGAATCCAGAGGTGTTCCGCGAATCTCGGACTCAT
TTGCGGGATTTTGAGGCCATTTTATAAATATTCCTCTCGTGTTTTAAAAT
CCAAACTCCATGCATCTTTTCTGCGGTAGCCGTCGAATATTCCACGCTCT
TCGAAAACAGCCGGGCTAAAATCGCGTCGAGTCCATTTTTTGATCGGTGC
AAAAATCACGGCGTTAGGCTCCGGGGTGCAGTCTCAAATATTCAGCCGAC
TCACCGCAAACCATACCGTTGAAAAACGCGGTCGTGTTCACCAGCACATC
GAAAGCGTGACTAACAGCTGCCTGCTAACGCTAGTCGGGGCATGCGACGG
CTCCTAGACACCATATCAGTCGGCCCTCCTAGCGGCTTGCGCTGTTCTTG
CCTGTGAGGACCTCGCTCCATGACTTCGTGGACACCGATCTCTCTTCAGA
ACAGCCATTTTTGCACCATTGGAGAGCAAAATGTTTGCCTTCAAGACAGC
TAGAAATAAAGGTGTGGAGTCTGAATCTTTAGAGAAACACAAGCTGTTAC
GTTCGGGTGGGTTGAGGAGTAGCGCAGCAGGACGCTAAGGGCCGAACTGA
AAAGTGGTGCTCTCGGGAGGGTGCGTGCTATCAATTTCCGGATACCCCAA
AAAACGTGCATCCAAAAAGTCTATCGAATTTGTGCGGGCATTGCTCGTGT
GATAGTTTACACAGTTGTCGTTGCCGTACTGTAGGCGCTGATTTTCGAAA
GAGTTCTGGTAGAGGGCTTACCTTTACCAGCCTACACCACAAGATTCGAG
TTGAAGTAAAGCACGGAAACCATTTCACAACACTGAACCTTTGCCCTGTG
ATCGATATCGATACTGTGGCAATTGTAATCGATTATCGTTTTCCTTGCTG
TCTCAGGTACAGCAAACGTGATCGAGCTCGGAGAGCTGTTGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig936:25614..28207-

>mRNA_L-elsbetiae_contig936.18357.1 ID=mRNA_L-elsbetiae_contig936.18357.1|Name=mRNA_L-elsbetiae_contig936.18357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig936:25614..28207- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGCCATACGAGGCTTTACTCTCGGCTTGCAGGTTCTCCTCGCCGC
GTCTGCTGCCACTTCTCAAAGCGACATCGATGGAATACCTGAGGTTGGCA
TCGGTGCCGTGCACCCAATCTGCGATCCCCTCCAGAGGGAATGCATTTCG
AGCGACGAACAAGTGCAAGACGAGATAATAGCGGGTCTTCAGGCCGAAGA
CAAGGTTACCGATGAAAGCCATACGAGGCTTTACTCTCGGCTTGCAGGTT
CTCCTCGCCGCGTCTGCTGCCACTTCTCAAAGCGACATCGATGGAATACC
TGAGGTTGGCATCGGTGCCGTGCACCCAATCTGCGATCCCCTCCAGAGGG
AATGCATTTCGAGCGACGAACAAGTGCAAGACGAGATAATAGCGGGTCTT
CAGGCCGAAGACAAGGTTACCGGTACAGCAAACGTGATCGAGCTCGGAGA
GCTGTTGTGCGTACAGCAAACGTGATCGAGCTCGGAGAGCTGTTGTGC
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