mRNA_L-elsbetiae_contig934.18342.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig934.18342.1
Unique NamemRNA_L-elsbetiae_contig934.18342.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig934.18342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig934contigL-elsbetiae_contig934:30086..30656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig934.18342.1prot_L-elsbetiae_contig934.18342.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig934 30164..30475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817003.325425-UTR-L-elsbetiae_contig934:30085..301631622817003.325425-UTR-L-elsbetiae_contig934:30085..30163Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig934 30086..30163 +
1691683975.3966458-UTR-L-elsbetiae_contig934:30085..301631691683975.3966458-UTR-L-elsbetiae_contig934:30085..30163Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig934 30086..30163 +
1622817003.346783-UTR-L-elsbetiae_contig934:30475..306561622817003.346783-UTR-L-elsbetiae_contig934:30475..30656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig934 30476..30656 +
1691683975.4205494-UTR-L-elsbetiae_contig934:30475..306561691683975.4205494-UTR-L-elsbetiae_contig934:30475..30656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig934 30476..30656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817003.33581-CDS-L-elsbetiae_contig934:30163..304751622817003.33581-CDS-L-elsbetiae_contig934:30163..30475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig934 30164..30475 +
1691683975.4114916-CDS-L-elsbetiae_contig934:30163..304751691683975.4114916-CDS-L-elsbetiae_contig934:30163..30475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig934 30164..30475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig934.18342.1

>prot_L-elsbetiae_contig934.18342.1 ID=prot_L-elsbetiae_contig934.18342.1|Name=mRNA_L-elsbetiae_contig934.18342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MLDVPSCTRNRSLRVKERIKRPEKYQSLQRQNTNQPVASSRTSRYIHTET
HDNVLQKRRIRPQLNSSTRQTNSVVPQRTPSHFPTDIRNPRIDNRIVHTD
CRP*
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mRNA from alignment at L-elsbetiae_contig934:30086..30656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig934.18342.1 ID=mRNA_L-elsbetiae_contig934.18342.1|Name=mRNA_L-elsbetiae_contig934.18342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=571bp|location=Sequence derived from alignment at L-elsbetiae_contig934:30086..30656+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTTCCAAGCCGACACAATAATACTCTACCAGATCCATGGCAGGCAGTC
AGTAGCAAAGGCAATCTCAGTTCGGGAGATGCTGGATGTACCAAGCTGCA
CGAGGAACAGGTCGCTCAGAGTAAAAGAGAGGATCAAACGCCCCGAAAAA
TACCAATCATTGCAACGACAAAATACGAACCAACCAGTTGCATCAAGCCG
AACATCTCGCTACATACACACAGAGACACACGACAATGTTCTGCAAAAAC
GACGCATCAGGCCTCAATTGAATTCCTCCACCAGGCAAACCAACAGCGTT
GTCCCCCAACGAACACCATCGCATTTTCCGACAGATATACGTAACCCCCG
AATCGACAATCGAATTGTACACACTGACTGCAGACCATGAATAAAATACT
GCACCAGCCACACAAAGAGCCAGATCGATACACGGAAACACGCAAAAAAA
GCAGCAGAAACAACATTACAATAAACCGGCCTGCATAATTTTGTTCAGCC
ACGACTGCTGTACAGCAATGCAATTCGTGGTGGTTGCTGGATTTGCACCA
ACATCTCTTGCCCCCCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig934:30086..30656+

>mRNA_L-elsbetiae_contig934.18342.1 ID=mRNA_L-elsbetiae_contig934.18342.1|Name=mRNA_L-elsbetiae_contig934.18342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig934:30086..30656+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGATGTACCAAGCTGCACGAGGAACAGGTCGCTCAGAGTAAAAGA
GAGGATCAAACGCCCCGAAAAATACCAATCATTGCAACGACAAAATACGA
ACCAACCAGTTGCATCAAGCCGAACATCTCGCTACATACACACAGAGACA
CACGACAATGTTCTGCAAAAACGACGCATCAGGCCTCAATTGAATTCCTC
CACCAGGCAAACCAACAGCGTTGTCCCCCAACGAACACCATCGCATTTTC
CGACAGATATACGTAACCCCCGAATCGACAATCGAATTGTACACACTGAC
TGCAGACCATGAATGCTGGATGTACCAAGCTGCACGAGGAACAGGTCGCT
CAGAGTAAAAGAGAGGATCAAACGCCCCGAAAAATACCAATCATTGCAAC
GACAAAATACGAACCAACCAGTTGCATCAAGCCGAACATCTCGCTACATA
CACACAGAGACACACGACAATGTTCTGCAAAAACGACGCATCAGGCCTCA
ATTGAATTCCTCCACCAGGCAAACCAACAGCGTTGTCCCCCAACGAACAC
CATCGCATTTTCCGACAGATATACGTAACCCCCGAATCGACAATCGAATT
GTACACACTGACTGCAGACCATGA
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